mRNA_L-elsbetiae_contig1757.4950.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1757.4950.1
Unique NamemRNA_L-elsbetiae_contig1757.4950.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1757.4950.1 vs. uniprot
Match: A0A6H5KA62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA62_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.370e-26
Identity = 56/77 (72.73%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 SNLLAVLEVYRGRRRLFQIQVDEIAQEKRARHYQKDDTILGLCVEHTGESDVGFRNIAHVERLATKLKTDDIHLGSE 231
            +NL AV+EVY GR RLFQ QVDEIAQEK ARHYQ +DTILGLC + TGES+V F+NI HVERL  KLK  +IHLGSE
Sbjct:  130 ANLQAVVEVYGGRSRLFQSQVDEIAQEKHARHYQNNDTILGLCAQCTGESNVYFKNINHVERLGGKLKKGEIHLGSE 206
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1757.4950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KA62_9PHAE1.370e-2672.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1757contigL-elsbetiae_contig1757:3967..4384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size272
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.6366336-CDS-L-elsbetiae_contig1757:3967..41231622815731.6366336-CDS-L-elsbetiae_contig1757:3967..4123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 3968..4123 -
1691683066.2973738-CDS-L-elsbetiae_contig1757:3967..41231691683066.2973738-CDS-L-elsbetiae_contig1757:3967..4123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 3968..4123 -
1622815731.6486912-CDS-L-elsbetiae_contig1757:4270..43841622815731.6486912-CDS-L-elsbetiae_contig1757:4270..4384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 4271..4384 -
1691683066.3133771-CDS-L-elsbetiae_contig1757:4270..43841691683066.3133771-CDS-L-elsbetiae_contig1757:4270..4384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 4271..4384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1757.4950.1prot_L-elsbetiae_contig1757.4950.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1757 3968..4384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1757.4950.1

>prot_L-elsbetiae_contig1757.4950.1 ID=prot_L-elsbetiae_contig1757.4950.1|Name=mRNA_L-elsbetiae_contig1757.4950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
SNLLAVLEVYRGRRRLFQIQVDEIAQEKRARHYQKDDTILGLCVEHTGES
DVGFRNIAHVERLATKLKTDDIHLGSENTVFSIQGFGSTP
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mRNA from alignment at L-elsbetiae_contig1757:3967..4384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1757.4950.1 ID=mRNA_L-elsbetiae_contig1757.4950.1|Name=mRNA_L-elsbetiae_contig1757.4950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=418bp|location=Sequence derived from alignment at L-elsbetiae_contig1757:3967..4384- (Laminarionema elsbetiae ELsaHSoW15)
AGCAACTTGCTGGCGGTGCTGGAGGTCTACCGCGGAAGACGCCGTCTCTT
TCAGATCCAAGTGGACGAGATCGCCCAGGAGAAGCGTGCACGGCACTACC
AGAAGGATGACACGGTACGTAGGTCAGGCTGGCTCCCCCGTCTCTCTCCG
CAAATACCTCGAGCGAGTGCTGCCTTGGTCTCGACGTTGCTTGTTTACTG
ACGTGTTTGAAAGAGATATCGACTCGCCTGCACGCTCCCTCCTTCCTGTT
GCCCGCCGCAGATTCTGGGATTGTGCGTGGAGCACACAGGCGAGTCTGAC
GTCGGTTTCAGGAACATCGCCCACGTGGAACGCCTCGCCACCAAACTCAA
GACTGATGACATCCACCTTGGCAGCGAAAACACCGTCTTCTCCATACAGG
GCTTCGGGAGCACTCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1757:3967..4384-

>mRNA_L-elsbetiae_contig1757.4950.1 ID=mRNA_L-elsbetiae_contig1757.4950.1|Name=mRNA_L-elsbetiae_contig1757.4950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig1757:3967..4384- (Laminarionema elsbetiae ELsaHSoW15)
AGCAACTTGCTGGCGGTGCTGGAGGTCTACCGCGGAAGACGCCGTCTCTT
TCAGATCCAAGTGGACGAGATCGCCCAGGAGAAGCGTGCACGGCACTACC
AGAAGGATGACACGAGCAACTTGCTGGCGGTGCTGGAGGTCTACCGCGGA
AGACGCCGTCTCTTTCAGATCCAAGTGGACGAGATCGCCCAGGAGAAGCG
TGCACGGCACTACCAGAAGGATGACACGATTCTGGGATTGTGCGTGGAGC
ACACAGGCGAGTCTGACGTCGGTTTCAGGAACATCGCCCACGTGGAACGC
CTCGCCACCAAACTCAAGACTGATGACATCCACCTTGGCAGCGAAAACAC
CGTCTTCTCCATACAGGGCTTCGGGAGCACTCCCATTCTGGGATTGTGCG
TGGAGCACACAGGCGAGTCTGACGTCGGTTTCAGGAACATCGCCCACGTG
GAACGCCTCGCCACCAAACTCAAGACTGATGACATCCACCTTGGCAGCGA
AAACACCGTCTTCTCCATACAGGGCTTCGGGAGCACTCCC
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