mRNA_L-elsbetiae_contig17549.4942.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 330 bits (845), Expect = 4.900e-113 Identity = 167/192 (86.98%), Postives = 180/192 (93.75%), Query Frame = 1 Query: 1 MVATQMFLGTAATLIASSAAFVAPMAVRSVAPAASSSSLRMSAGSDYVATLPGAPFSDGKIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 576 MVATQ+FLG+AATLIASS AFVAPMAVRS APA+SSS+L+MSAGSDYVATLPGAPF DGKIFDPL+LS+GA P DIKKWREAEIKHGRVAMLASLGVLVAE+YHP FMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLK+ Y PGDLGFDPL +KP++EA L M+TK Sbjct: 1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTK 192
BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 319 bits (818), Expect = 7.300e-109 Identity = 161/192 (83.85%), Postives = 177/192 (92.19%), Query Frame = 1 Query: 1 MVATQMFLGTAATLIASSAAFVAPMAVRSVAPAASSSSLRMSAGSDYVATLPGAPFSDGKIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 576 MVA+QMFLGTAA LIASS AFVAP+AVRS APA+++S+L+MSAGSDYVATLPGAPFSDGKIFDPLSLS+GAAPGDIKKWREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL +KP EA L M+TK Sbjct: 1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTK 192
BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 308 bits (789), Expect = 1.710e-104 Identity = 153/188 (81.38%), Postives = 169/188 (89.89%), Query Frame = 1 Query: 13 QMFLGTAATLIASSAAFVAPMAVRSVAPAASSSSLRMSAGSDYVATLPGAPFSDGKIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 576 MFLGTAATLIASS AFVAPMAVRS APA+S+S+L+MSAGSDYVATLPGAPF DGKIFDPL LS+GA PG+IK WREAEIKHGRVAMLA++GV+VAE+YHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTI A+ PS VTGEGGL+D YSPGDLGFDPL +KPK++A L MQTK Sbjct: 6 NMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTK 193
BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI) HSP 1 Score: 282 bits (721), Expect = 3.470e-94 Identity = 142/188 (75.53%), Postives = 165/188 (87.77%), Query Frame = 1 Query: 13 QMFLGTAATLIASSAAFVAPMAVRSVAPAASSSSLRMSAGSDYVATLPGAPFSDGKIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 576 MFLGTAATLIASSAAFV PMAVRS APA+S+S+L+MSAG+DY+ATLPGA +GKIFD L L++GA PG+IK WREAEIKHGRVAMLA++GV+VAE+YHPFFMGPDYIGPAVDHFQEI+A++P+FW +SLLGMAFIEYNTI A+ PS VTGEGGL+D YSPGDLGFDP IKPK++A L MQ K Sbjct: 6 NMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNK 190
BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE) HSP 1 Score: 252 bits (643), Expect = 1.070e-82 Identity = 138/192 (71.88%), Postives = 148/192 (77.08%), Query Frame = 1 Query: 1 MVATQMFLGTAATLIASSAAFVAPMAVRSVAPAASSSSLRMSAGSDYVATLPGAPFSDGKIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 576 MVA+QMF+GTAATLIASS AFVAPMAVRSV SS L+MSAGSDYVATLPGAPFSDGKIFDPL LS+GAAPGDIKKWREAEIKHGRVAMLASLGV+VAE FW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL +KP +EA L M+TK Sbjct: 1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTK 164
BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 253 bits (645), Expect = 2.950e-80 Identity = 166/364 (45.60%), Postives = 178/364 (48.90%), Query Frame = 1 Query: 1 MVATQMFLGTAATLIASSAAFVAPMAVRSVA-PAASSSSLRMSAGSDYVATLPGAPFSDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 576 MVA+QMF+GTAATLIASS AFVAP+AVRSVA SSSSL MSAGSDYVATLPGAPFSDGK IFDPL LS+GAAPGDIKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL +KP +EA L M+TK Sbjct: 1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTK 364
BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI) HSP 1 Score: 243 bits (621), Expect = 2.710e-79 Identity = 113/133 (84.96%), Postives = 124/133 (93.23%), Query Frame = 1 Query: 178 KIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 576 +IFDPL LS+GAAPGDIKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAF+EYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL +KP +EA L M+TK Sbjct: 36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTK 168
BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI) HSP 1 Score: 223 bits (568), Expect = 1.710e-71 Identity = 105/133 (78.95%), Postives = 115/133 (86.47%), Query Frame = 1 Query: 178 KIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 576 KIFDPL L++GA GDIK WREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISA++PEFW FSLL +A IEYNTI A+ PS VTGEGGL+D YSPGDLGFDPL +KP ++ L TMQTK Sbjct: 15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTK 147
BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI) HSP 1 Score: 218 bits (556), Expect = 6.360e-69 Identity = 119/197 (60.41%), Postives = 148/197 (75.13%), Query Frame = 1 Query: 1 MVATQMFLGTAATLIASSAAFVAPMAV--RSVAPAASSSSLRMSAGSDYVATLPGAPF---SDGKIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 576 MV +Q+FLGTAATLIASSAAFVAP+A S+A A+SS+ +M+AGSDY A+LPGAPF ++GK FDP L+ P IKKWREAE+KHGRV+MLA++G+LV+E +HP FMGP YIGPAV+H Q+I+ YP FWV SL +AFIE TI A+ T S VTG G LK Y PGDLGFDPLG+ PK+ D +Q++ Sbjct: 1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQ 197
BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI) HSP 1 Score: 219 bits (557), Expect = 1.580e-68 Identity = 109/189 (57.67%), Postives = 143/189 (75.66%), Query Frame = 1 Query: 10 TQMFLGTAATLIASSAAFVAPMAVRSVAPAASSSSLRMSAGSDYVATLPGAPFSDGKIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 576 T +G A+ AS AF+ P +++ +S++ RMSAGSDYV+TLPGAPF+DGK++DP+ LS A P DIKKWREAEIKHGRVAMLAS+GVLVAE +HP F+GPDYIGPA+ HF+EI+A++P+FW +LL +A++EY I F VTGEGG++ Y PGDLGFDPLG+ P++E +L M+TK Sbjct: 56 TGALVGMASWCFASCEAFIVPTPT-TLSARPTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTK 243 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig17549.4942.1 >prot_L-elsbetiae_contig17549.4942.1 ID=prot_L-elsbetiae_contig17549.4942.1|Name=mRNA_L-elsbetiae_contig17549.4942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=192bp MVATQMFLGTAATLIASSAAFVAPMAVRSVAPAASSSSLRMSAGSDYVATback to top mRNA from alignment at L-elsbetiae_contig17549:832..3371+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig17549.4942.1 ID=mRNA_L-elsbetiae_contig17549.4942.1|Name=mRNA_L-elsbetiae_contig17549.4942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2540bp|location=Sequence derived from alignment at L-elsbetiae_contig17549:832..3371+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig17549:832..3371+ >mRNA_L-elsbetiae_contig17549.4942.1 ID=mRNA_L-elsbetiae_contig17549.4942.1|Name=mRNA_L-elsbetiae_contig17549.4942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1152bp|location=Sequence derived from alignment at L-elsbetiae_contig17549:832..3371+ (Laminarionema elsbetiae ELsaHSoW15)back to top |