prot_L-elsbetiae_contig17549.4942.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig17549.4942.1
Unique Name	prot_L-elsbetiae_contig17549.4942.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	192

Homology

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BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 330 bits (845), Expect = 4.900e-113
Identity = 167/192 (86.98%), Postives = 180/192 (93.75%), Query Frame = 0

Query:    1 MVATQMFLGTAATLIASSAAFVAPMAVRSVAPAASSSSLRMSAGSDYVATLPGAPFSDGKIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 192
            MVATQ+FLG+AATLIASS AFVAPMAVRS APA+SSS+L+MSAGSDYVATLPGAPF DGKIFDPL+LS+GA P DIKKWREAEIKHGRVAMLASLGVLVAE+YHP FMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLK+ Y PGDLGFDPL +KP++EA L  M+TK
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTK 192

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BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 7.300e-109
Identity = 161/192 (83.85%), Postives = 177/192 (92.19%), Query Frame = 0

Query:    1 MVATQMFLGTAATLIASSAAFVAPMAVRSVAPAASSSSLRMSAGSDYVATLPGAPFSDGKIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 192
            MVA+QMFLGTAA LIASS AFVAP+AVRS APA+++S+L+MSAGSDYVATLPGAPFSDGKIFDPLSLS+GAAPGDIKKWREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL +KP  EA L  M+TK
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTK 192

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BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 1.710e-104
Identity = 153/188 (81.38%), Postives = 169/188 (89.89%), Query Frame = 0

Query:    5 QMFLGTAATLIASSAAFVAPMAVRSVAPAASSSSLRMSAGSDYVATLPGAPFSDGKIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 192
             MFLGTAATLIASS AFVAPMAVRS APA+S+S+L+MSAGSDYVATLPGAPF DGKIFDPL LS+GA PG+IK WREAEIKHGRVAMLA++GV+VAE+YHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTI  A+  PS VTGEGGL+D YSPGDLGFDPL +KPK++A L  MQTK
Sbjct:    6 NMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTK 193

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BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 3.470e-94
Identity = 142/188 (75.53%), Postives = 165/188 (87.77%), Query Frame = 0

Query:    5 QMFLGTAATLIASSAAFVAPMAVRSVAPAASSSSLRMSAGSDYVATLPGAPFSDGKIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 192
             MFLGTAATLIASSAAFV PMAVRS APA+S+S+L+MSAG+DY+ATLPGA   +GKIFD L L++GA PG+IK WREAEIKHGRVAMLA++GV+VAE+YHPFFMGPDYIGPAVDHFQEI+A++P+FW +SLLGMAFIEYNTI  A+  PS VTGEGGL+D YSPGDLGFDP  IKPK++A L  MQ K
Sbjct:    6 NMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNK 190

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BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 1.070e-82
Identity = 138/192 (71.88%), Postives = 148/192 (77.08%), Query Frame = 0

Query:    1 MVATQMFLGTAATLIASSAAFVAPMAVRSVAPAASSSSLRMSAGSDYVATLPGAPFSDGKIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 192
            MVA+QMF+GTAATLIASS AFVAPMAVRSV    SS  L+MSAGSDYVATLPGAPFSDGKIFDPL LS+GAAPGDIKKWREAEIKHGRVAMLASLGV+VAE                            FW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL +KP +EA L  M+TK
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTK 164

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BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 2.950e-80
Identity = 166/364 (45.60%), Postives = 178/364 (48.90%), Query Frame = 0

Query:    1 MVATQMFLGTAATLIASSAAFVAPMAVRSVA-PAASSSSLRMSAGSDYVATLPGAPFSDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 192
            MVA+QMF+GTAATLIASS AFVAP+AVRSVA    SSSSL MSAGSDYVATLPGAPFSDGK                                                                                                                                                                           IFDPL LS+GAAPGDIKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL +KP +EA L  M+TK
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTK 364

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BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 2.710e-79
Identity = 113/133 (84.96%), Postives = 124/133 (93.23%), Query Frame = 0

Query:   60 KIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 192
            +IFDPL LS+GAAPGDIKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAF+EYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL +KP +EA L  M+TK
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTK 168

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BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 1.710e-71
Identity = 105/133 (78.95%), Postives = 115/133 (86.47%), Query Frame = 0

Query:   60 KIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 192
            KIFDPL L++GA  GDIK WREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISA++PEFW FSLL +A IEYNTI  A+  PS VTGEGGL+D YSPGDLGFDPL +KP ++  L TMQTK
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTK 147

[Close]

BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 6.360e-69
Identity = 119/197 (60.41%), Postives = 148/197 (75.13%), Query Frame = 0

Query:    1 MVATQMFLGTAATLIASSAAFVAPMAV--RSVAPAASSSSLRMSAGSDYVATLPGAPF---SDGKIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 192
            MV +Q+FLGTAATLIASSAAFVAP+A    S+A  A+SS+ +M+AGSDY A+LPGAPF   ++GK FDP  L+    P  IKKWREAE+KHGRV+MLA++G+LV+E +HP FMGP YIGPAV+H Q+I+  YP FWV SL  +AFIE  TI  A+ T S VTG G LK  Y PGDLGFDPLG+ PK+  D   +Q++
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQ 197

[Close]

BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 1.580e-68
Identity = 109/189 (57.67%), Postives = 143/189 (75.66%), Query Frame = 0

Query:    4 TQMFLGTAATLIASSAAFVAPMAVRSVAPAASSSSLRMSAGSDYVATLPGAPFSDGKIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK 192
            T   +G A+   AS  AF+ P    +++   +S++ RMSAGSDYV+TLPGAPF+DGK++DP+ LS  A P DIKKWREAEIKHGRVAMLAS+GVLVAE +HP F+GPDYIGPA+ HF+EI+A++P+FW  +LL +A++EY  I   F     VTGEGG++  Y PGDLGFDPLG+ P++E +L  M+TK
Sbjct:   56 TGALVGMASWCFASCEAFIVPTPT-TLSARPTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTK 243

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig17549.4942.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7Q6_ECTSI	4.900e-113	86.98	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	7.300e-109	83.85	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S1_ECTSI	1.710e-104	81.38	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	3.470e-94	75.53	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5K8D0_9PHAE	1.070e-82	71.88	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
A0A6H5JWB4_9PHAE	2.950e-80	45.60	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G7S5_ECTSI	2.710e-79	84.96	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q7_ECTSI	1.710e-71	78.95	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7FQG7_ECTSI	6.360e-69	60.41	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G5B4_ECTSI	1.580e-68	57.67	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 51..192 e-value: 1.1E-22 score: 81.3
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 13..192 e-value: 2.1E-21 score: 78.4
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 9..192
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..15
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..33
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 34..192
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..33
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..20 score: 0.573
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 56..192
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 9..192

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig17549	contig	L-elsbetiae_contig17549:832..3371 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig17549.4942.1	mRNA_L-elsbetiae_contig17549.4942.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig17549 832..3371 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig17549.4942.1 ID=prot_L-elsbetiae_contig17549.4942.1|Name=mRNA_L-elsbetiae_contig17549.4942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=192bp
MVATQMFLGTAATLIASSAAFVAPMAVRSVAPAASSSSLRMSAGSDYVAT
LPGAPFSDGKIFDPLSLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVA
EEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAF
ETPSAVTGEGGLKDSYSPGDLGFDPLGIKPKNEADLVTMQTK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln