mRNA_L-elsbetiae_contig17517.4931.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 323 bits (829), Expect = 5.790e-96 Identity = 167/262 (63.74%), Postives = 194/262 (74.05%), Query Frame = 2 Query: 8 RRRSNSKNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDG-KVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVGK 790 RR+SN KNKS++ERLP I + KR+REL RE RRC +VP W Q+ P +E SG Q KWGRF +ER+NTDQVP GFVNGQ +WE GA+RVH+ QPFPGLEKRQCTVQPT GPGGK+M+CAIIFRGKG GISKVE+ AYD+RVDV+FQPKAWAD FCM+WL+R FRPSLMA G KVP Q+VLLADNLH QTTE FR+YL+KECNTLLWLLPA TD LQP++AG G R K +G+ Sbjct: 1478 RRKSNGKNKSSEERLPKINAWLKRYRELLREPRRCGGELVP---WPQQVP--QEASGDLQAHH----------------KWGRFLPDERLNTDQVPTGFVNGQVDSWEQTGARRVHIMQPFPGLEKRQCTVQPTFGPGGKVMKCAIIFRGKGTGISKVEKAAYDKRVDVFFQPKAWADDNFCMQWLERCFRPSLMAASGGKVPDAQTVLLADNLHGQTTEKFRKYLYKECNTLLWLLPAGCTDELQPVDAGMGRRMKTGMGR 1718
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5JD00_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD00_9PHAE) HSP 1 Score: 264 bits (675), Expect = 6.130e-83 Identity = 126/177 (71.19%), Postives = 143/177 (80.79%), Query Frame = 2 Query: 257 FQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVG 787 F R N DQVPLGFV GQ TW+ +GA+RVHVGQPFPGLEKRQCTVQPT G GGK RCA IFRGKG GI+KVE+ AYD+R+DV+FQPKAWADS FCM+WL+RSFRPS M DGKVP+EQS+LLADNLH QTTE FR+Y +ECNT W LPA TD +QP++AGYG R KV VG Sbjct: 11 FVKELRDNADQVPLGFVTGQEDTWDKRGAKRVHVGQPFPGLEKRQCTVQPTTGAGGKKTRCATIFRGKGTGITKVEKAAYDKRLDVFFQPKAWADSDFCMQWLERSFRPSRMV-DGKVPEEQSLLLADNLHGQTTEEFRKY--EECNTFFWHLPAGCTDEVQPIDAGYGRRLKVAVG 184
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5KH13_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH13_9PHAE) HSP 1 Score: 251 bits (641), Expect = 7.330e-76 Identity = 138/262 (52.67%), Postives = 171/262 (65.27%), Query Frame = 2 Query: 2 SKRRRSNSKNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVG 787 SKRRRSN KNKS +ERLP IQ+FH+RFR+L +E R AP + S + E RDPK+G+FQL ER N DQVPL FVNG +TWE GA RV V QPF GL KR+CT+Q GPG K MR ++IFRG+G IS VE+ AY + VDV+FQ AWAD +FCMEW KRS+R L+ G++PK +S+L+ DNLHAQTT+ F+ YL K+CNT+ WL PA TD +QP++AG G KV VG Sbjct: 78 SKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYR------------APEASDVSAMSTVAEGES----------RDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAVSQPFAGLGKRKCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRGELPKARSILIMDNLHAQTTDEFKGYLAKQCNTIAWLGPAECTDEVQPVDAGAGRFLKVEVG 317
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5JKG3_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG3_9PHAE) HSP 1 Score: 255 bits (651), Expect = 5.600e-75 Identity = 139/262 (53.05%), Postives = 172/262 (65.65%), Query Frame = 2 Query: 2 SKRRRSNSKNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVG 787 SKRRRSN KNKS +ERLP IQ+FH+RFR+L +E R AP + S + E RDPK+G+FQL ER N DQVPL FVNG +TWE GA RV + QPF GLEKRQCT+Q GPG K MR ++IFRG+G IS VE+ AY + VDV+FQ AWAD +FCMEW KRS+R L+ G++PK +S+L+ DNLHAQTT+ F+ YL K+CNT+ WL PA TD +QP++AG G KV VG Sbjct: 240 SKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYR------------APEASDVSAMSTVAEGES----------RDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRQCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRGELPKARSILIMDNLHAQTTDEFKGYLAKQCNTIAWLGPAECTDEVQPVDAGAGRFLKVEVG 479
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5KZ92_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ92_9PHAE) HSP 1 Score: 251 bits (640), Expect = 2.230e-74 Identity = 137/262 (52.29%), Postives = 170/262 (64.89%), Query Frame = 2 Query: 2 SKRRRSNSKNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVG 787 SKRRRSN KNKS +ERLP IQ+FH+RFR+L +E R AP + S + E RDPK+G+FQL ER N DQVPL FVNG +TWE GA RV + QPF GLEKRQCT+Q GPG K MR +I RG+G IS VE+ AY + VDV+FQ AWAD +FCMEW KRS+R L+ G++PK +S+L+ DNLHAQTT+ F+ YL K+CNT+ WL PA TD +QP++AG G +V VG Sbjct: 268 SKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYR------------APEASDVSAMSTVAEGES----------RDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRQCTMQVIFGPGEKTMRILVILRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRGELPKARSILIMDNLHAQTTDEFKGYLAKQCNTIAWLGPAQCTDEVQPVDAGAGRFLEVEVG 507
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5KDV1_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV1_9PHAE) HSP 1 Score: 253 bits (645), Expect = 3.680e-74 Identity = 138/262 (52.67%), Postives = 172/262 (65.65%), Query Frame = 2 Query: 2 SKRRRSNSKNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVG 787 SKRRRSN KNKS +ERLP IQ+FH+RFR+L +E R AP + S + E RDPK+G+FQL ER N DQVPL FVNG +TWE GA RV + QPF GLEKRQCT+Q GPG K MR ++IFRG+G IS VE+ AY + VDV+FQ AWAD +FCMEW KRS+R L+ G++PK +S+L+ DNL+AQTT+ F+ YL K+CNT+ WL PA TD +QP++AG G KV VG Sbjct: 308 SKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYR------------APEASDVSAMSTVAEGES----------RDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRQCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRGELPKARSILIMDNLYAQTTDEFKGYLAKQCNTIAWLGPADCTDEVQPVDAGAGRLLKVEVG 547
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5JFX9_9PHAE (C2H2-type domain-containing protein n=15 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX9_9PHAE) HSP 1 Score: 255 bits (651), Expect = 3.460e-73 Identity = 139/262 (53.05%), Postives = 172/262 (65.65%), Query Frame = 2 Query: 2 SKRRRSNSKNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVG 787 SKRRRSN KNKS +ERLP IQ+FH+RFR+L +E R AP + S + E RDPK+G+FQL ER N DQVPL FVNG +TWE GA RV + QPF GLEKRQCT+Q GPG K MR ++IFRG+G IS VE+ AY + VDV+FQ AWAD +FCMEW KRS+R L+ G++PK +S+L+ DNLHAQTT+ F+ YL K+CNT+ WL PA TD +QP++AG G KV VG Sbjct: 422 SKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYR------------APEASDVSAMSTVAEGES----------RDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRQCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRGELPKARSILIMDNLHAQTTDEFKGYLAKQCNTIAWLGPAECTDEVQPVDAGAGRFLKVEVG 661
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5JW14_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW14_9PHAE) HSP 1 Score: 231 bits (589), Expect = 7.270e-69 Identity = 130/276 (47.10%), Postives = 156/276 (56.52%), Query Frame = 2 Query: 26 KNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVGKA---------ARLVARVGREP 826 KNKS ++R P ++ FH+R R+L +E PV P GRF LN R N DQV L FVNG +TW+ GA RV +GQPFPGLEKRQCTV IG G K+MR +IFRGKG +S VE+ AYD VDV FQ AW D CM W K SF S+ +G VP+EQS+L ADNLHAQTT+ F+++L ECNTLL LLP +TD LQP++AGYG KV V A AR VAR+G P Sbjct: 2 KNKSVEDRFPQMKSFHRRLRQLLQEPPVXXXXXXXXXXX-----------------------NCAAIVPVESPLHGRFSLNARFNVDQVGLAFVNGLDSTWDETGALRVQIGQPFPGLEKRQCTVNCFIGAGDKLMRTVVIFRGKGK-VSAVEKAAYDPGVDVLFQENAWMDGPTCMAWAKNSFLRSIKGEEGVVPEEQSILFADNLHAQTTDEFKKFLHGECNTLLRLLPPKLTDELQPVDAGYGRLLKVEVAGARRILFTRFTARAVARMGARP 253
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5JZQ9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ9_9PHAE) HSP 1 Score: 237 bits (605), Expect = 6.850e-68 Identity = 134/265 (50.57%), Postives = 162/265 (61.13%), Query Frame = 2 Query: 2 SKRRRSNSKNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGG---KIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVG 787 SKRRR+N KNKS ++RLP ++ FH+R R+L +E RR G E +G PV P +GRF LN R N DQV L FVNG +TW+ GA RV +GQPFPGLEKRQCTV IG G K+ R A+IFRG G +S VE+ AYD VDV FQ AW D CM W K SF S+ +G VP+EQS+L ADNLHAQTT+ F++ L ECNTLL LLP +TD LQP++AGYG+ KV VG Sbjct: 409 SKRRRTNMKNKSVEDRLPQMKSFHRRLRQLLQEP--PVRRAAAGCA--------AENNGAA-------------IVPVESPHYGRFSLNTRFNVDQVGLAFVNGLDSTWDETGALRVQIGQPFPGLEKRQCTVNCCIGAGXAGDKLRRTAVIFRGNGK-VSAVEKAAYDPGVDVLFQENAWMDDPTCMAWAKNSFLRSIKGEEGVVPEEQSILFADNLHAQTTDEFKKLLHGECNTLLRLLPPKLTDELQPVDAGYGHLLKVEVG 649
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5K4R4_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R4_9PHAE) HSP 1 Score: 239 bits (611), Expect = 1.190e-67 Identity = 134/262 (51.15%), Postives = 168/262 (64.12%), Query Frame = 2 Query: 2 SKRRRSNSKNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVG 787 SKR RSN K+KS ERLP IQ+FH+RFR+L +E R AP + S + E RDPK+G+FQL ER N DQVPL FVNG +TWE GA RV + QPF GLEKR+CT+Q GPG K MR ++IFRG+G IS VE+ AY + VDV+FQ A A +FCMEW KRS+R L+ G++PK +S+L+ DNLHAQTT+ F+ YL K+CNT+ WL PA TD +QP++AG G KV VG Sbjct: 709 SKRCRSNLKSKSVKERLPKIQRFHRRFRKLLQEPVRYR------------APEASDVSAMSTVAEGES----------RDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRKCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENALAHQKFCMEWAKRSYREGLIRGRGELPKARSILIMDNLHAQTTDEFKGYLAKQCNTIAWLGPAECTDEVQPVDAGAGRFLKVEVG 948 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig17517.4931.1 >prot_L-elsbetiae_contig17517.4931.1 ID=prot_L-elsbetiae_contig17517.4931.1|Name=mRNA_L-elsbetiae_contig17517.4931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=262bp MNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGback to top mRNA from alignment at L-elsbetiae_contig17517:1742..2884+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig17517.4931.1 ID=mRNA_L-elsbetiae_contig17517.4931.1|Name=mRNA_L-elsbetiae_contig17517.4931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1143bp|location=Sequence derived from alignment at L-elsbetiae_contig17517:1742..2884+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig17517:1742..2884+ >mRNA_L-elsbetiae_contig17517.4931.1 ID=mRNA_L-elsbetiae_contig17517.4931.1|Name=mRNA_L-elsbetiae_contig17517.4931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1572bp|location=Sequence derived from alignment at L-elsbetiae_contig17517:1742..2884+ (Laminarionema elsbetiae ELsaHSoW15)back to top |