mRNA_L-elsbetiae_contig17517.4931.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17517.4931.1
Unique NamemRNA_L-elsbetiae_contig17517.4931.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 323 bits (829), Expect = 5.790e-96
Identity = 167/262 (63.74%), Postives = 194/262 (74.05%), Query Frame = 2
Query:    8 RRRSNSKNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDG-KVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVGK 790
            RR+SN KNKS++ERLP I  + KR+REL RE RRC   +VP   W Q+ P  +E SG  Q                   KWGRF  +ER+NTDQVP GFVNGQ  +WE  GA+RVH+ QPFPGLEKRQCTVQPT GPGGK+M+CAIIFRGKG GISKVE+ AYD+RVDV+FQPKAWAD  FCM+WL+R FRPSLMA  G KVP  Q+VLLADNLH QTTE FR+YL+KECNTLLWLLPA  TD LQP++AG G R K  +G+
Sbjct: 1478 RRKSNGKNKSSEERLPKINAWLKRYRELLREPRRCGGELVP---WPQQVP--QEASGDLQAHH----------------KWGRFLPDERLNTDQVPTGFVNGQVDSWEQTGARRVHIMQPFPGLEKRQCTVQPTFGPGGKVMKCAIIFRGKGTGISKVEKAAYDKRVDVFFQPKAWADDNFCMQWLERCFRPSLMAASGGKVPDAQTVLLADNLHGQTTEKFRKYLYKECNTLLWLLPAGCTDELQPVDAGMGRRMKTGMGR 1718          
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5JD00_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD00_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 6.130e-83
Identity = 126/177 (71.19%), Postives = 143/177 (80.79%), Query Frame = 2
Query:  257 FQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVG 787
            F    R N DQVPLGFV GQ  TW+ +GA+RVHVGQPFPGLEKRQCTVQPT G GGK  RCA IFRGKG GI+KVE+ AYD+R+DV+FQPKAWADS FCM+WL+RSFRPS M  DGKVP+EQS+LLADNLH QTTE FR+Y  +ECNT  W LPA  TD +QP++AGYG R KV VG
Sbjct:   11 FVKELRDNADQVPLGFVTGQEDTWDKRGAKRVHVGQPFPGLEKRQCTVQPTTGAGGKKTRCATIFRGKGTGITKVEKAAYDKRLDVFFQPKAWADSDFCMQWLERSFRPSRMV-DGKVPEEQSLLLADNLHGQTTEEFRKY--EECNTFFWHLPAGCTDEVQPIDAGYGRRLKVAVG 184          
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5KH13_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH13_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 7.330e-76
Identity = 138/262 (52.67%), Postives = 171/262 (65.27%), Query Frame = 2
Query:    2 SKRRRSNSKNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVG 787
            SKRRRSN KNKS +ERLP IQ+FH+RFR+L +E  R              AP   + S      + E           RDPK+G+FQL ER N DQVPL FVNG  +TWE  GA RV V QPF GL KR+CT+Q   GPG K MR ++IFRG+G  IS VE+ AY + VDV+FQ  AWAD +FCMEW KRS+R  L+   G++PK +S+L+ DNLHAQTT+ F+ YL K+CNT+ WL PA  TD +QP++AG G   KV VG
Sbjct:   78 SKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYR------------APEASDVSAMSTVAEGES----------RDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAVSQPFAGLGKRKCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRGELPKARSILIMDNLHAQTTDEFKGYLAKQCNTIAWLGPAECTDEVQPVDAGAGRFLKVEVG 317          
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5JKG3_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG3_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 5.600e-75
Identity = 139/262 (53.05%), Postives = 172/262 (65.65%), Query Frame = 2
Query:    2 SKRRRSNSKNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVG 787
            SKRRRSN KNKS +ERLP IQ+FH+RFR+L +E  R              AP   + S      + E           RDPK+G+FQL ER N DQVPL FVNG  +TWE  GA RV + QPF GLEKRQCT+Q   GPG K MR ++IFRG+G  IS VE+ AY + VDV+FQ  AWAD +FCMEW KRS+R  L+   G++PK +S+L+ DNLHAQTT+ F+ YL K+CNT+ WL PA  TD +QP++AG G   KV VG
Sbjct:  240 SKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYR------------APEASDVSAMSTVAEGES----------RDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRQCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRGELPKARSILIMDNLHAQTTDEFKGYLAKQCNTIAWLGPAECTDEVQPVDAGAGRFLKVEVG 479          
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5KZ92_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ92_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 2.230e-74
Identity = 137/262 (52.29%), Postives = 170/262 (64.89%), Query Frame = 2
Query:    2 SKRRRSNSKNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVG 787
            SKRRRSN KNKS +ERLP IQ+FH+RFR+L +E  R              AP   + S      + E           RDPK+G+FQL ER N DQVPL FVNG  +TWE  GA RV + QPF GLEKRQCT+Q   GPG K MR  +I RG+G  IS VE+ AY + VDV+FQ  AWAD +FCMEW KRS+R  L+   G++PK +S+L+ DNLHAQTT+ F+ YL K+CNT+ WL PA  TD +QP++AG G   +V VG
Sbjct:  268 SKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYR------------APEASDVSAMSTVAEGES----------RDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRQCTMQVIFGPGEKTMRILVILRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRGELPKARSILIMDNLHAQTTDEFKGYLAKQCNTIAWLGPAQCTDEVQPVDAGAGRFLEVEVG 507          
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5KDV1_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV1_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 3.680e-74
Identity = 138/262 (52.67%), Postives = 172/262 (65.65%), Query Frame = 2
Query:    2 SKRRRSNSKNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVG 787
            SKRRRSN KNKS +ERLP IQ+FH+RFR+L +E  R              AP   + S      + E           RDPK+G+FQL ER N DQVPL FVNG  +TWE  GA RV + QPF GLEKRQCT+Q   GPG K MR ++IFRG+G  IS VE+ AY + VDV+FQ  AWAD +FCMEW KRS+R  L+   G++PK +S+L+ DNL+AQTT+ F+ YL K+CNT+ WL PA  TD +QP++AG G   KV VG
Sbjct:  308 SKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYR------------APEASDVSAMSTVAEGES----------RDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRQCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRGELPKARSILIMDNLYAQTTDEFKGYLAKQCNTIAWLGPADCTDEVQPVDAGAGRLLKVEVG 547          
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5JFX9_9PHAE (C2H2-type domain-containing protein n=15 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX9_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 3.460e-73
Identity = 139/262 (53.05%), Postives = 172/262 (65.65%), Query Frame = 2
Query:    2 SKRRRSNSKNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVG 787
            SKRRRSN KNKS +ERLP IQ+FH+RFR+L +E  R              AP   + S      + E           RDPK+G+FQL ER N DQVPL FVNG  +TWE  GA RV + QPF GLEKRQCT+Q   GPG K MR ++IFRG+G  IS VE+ AY + VDV+FQ  AWAD +FCMEW KRS+R  L+   G++PK +S+L+ DNLHAQTT+ F+ YL K+CNT+ WL PA  TD +QP++AG G   KV VG
Sbjct:  422 SKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYR------------APEASDVSAMSTVAEGES----------RDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRQCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRGELPKARSILIMDNLHAQTTDEFKGYLAKQCNTIAWLGPAECTDEVQPVDAGAGRFLKVEVG 661          
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5JW14_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW14_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 7.270e-69
Identity = 130/276 (47.10%), Postives = 156/276 (56.52%), Query Frame = 2
Query:   26 KNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVGKA---------ARLVARVGREP 826
            KNKS ++R P ++ FH+R R+L +E                                           PV  P  GRF LN R N DQV L FVNG  +TW+  GA RV +GQPFPGLEKRQCTV   IG G K+MR  +IFRGKG  +S VE+ AYD  VDV FQ  AW D   CM W K SF  S+   +G VP+EQS+L ADNLHAQTT+ F+++L  ECNTLL LLP  +TD LQP++AGYG   KV V  A         AR VAR+G  P
Sbjct:    2 KNKSVEDRFPQMKSFHRRLRQLLQEPPVXXXXXXXXXXX-----------------------NCAAIVPVESPLHGRFSLNARFNVDQVGLAFVNGLDSTWDETGALRVQIGQPFPGLEKRQCTVNCFIGAGDKLMRTVVIFRGKGK-VSAVEKAAYDPGVDVLFQENAWMDGPTCMAWAKNSFLRSIKGEEGVVPEEQSILFADNLHAQTTDEFKKFLHGECNTLLRLLPPKLTDELQPVDAGYGRLLKVEVAGARRILFTRFTARAVARMGARP 253          
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5JZQ9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ9_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 6.850e-68
Identity = 134/265 (50.57%), Postives = 162/265 (61.13%), Query Frame = 2
Query:    2 SKRRRSNSKNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGG---KIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVG 787
            SKRRR+N KNKS ++RLP ++ FH+R R+L +E     RR   G           E +G                 PV  P +GRF LN R N DQV L FVNG  +TW+  GA RV +GQPFPGLEKRQCTV   IG G    K+ R A+IFRG G  +S VE+ AYD  VDV FQ  AW D   CM W K SF  S+   +G VP+EQS+L ADNLHAQTT+ F++ L  ECNTLL LLP  +TD LQP++AGYG+  KV VG
Sbjct:  409 SKRRRTNMKNKSVEDRLPQMKSFHRRLRQLLQEP--PVRRAAAGCA--------AENNGAA-------------IVPVESPHYGRFSLNTRFNVDQVGLAFVNGLDSTWDETGALRVQIGQPFPGLEKRQCTVNCCIGAGXAGDKLRRTAVIFRGNGK-VSAVEKAAYDPGVDVLFQENAWMDDPTCMAWAKNSFLRSIKGEEGVVPEEQSILFADNLHAQTTDEFKKLLHGECNTLLRLLPPKLTDELQPVDAGYGHLLKVEVG 649          
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Match: A0A6H5K4R4_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R4_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 1.190e-67
Identity = 134/262 (51.15%), Postives = 168/262 (64.12%), Query Frame = 2
Query:    2 SKRRRSNSKNKSADERLPTIQKFHKRFRELRRELRRCERRVVPGSGW*QEAPAPEEGSGGGQPQQPEQGXXXXXXXPVRDPKWGRFQLNERMNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGGKIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRSFRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAYMTDMLQPLNAGYGYRFKVLVG 787
            SKR RSN K+KS  ERLP IQ+FH+RFR+L +E  R              AP   + S      + E           RDPK+G+FQL ER N DQVPL FVNG  +TWE  GA RV + QPF GLEKR+CT+Q   GPG K MR ++IFRG+G  IS VE+ AY + VDV+FQ  A A  +FCMEW KRS+R  L+   G++PK +S+L+ DNLHAQTT+ F+ YL K+CNT+ WL PA  TD +QP++AG G   KV VG
Sbjct:  709 SKRCRSNLKSKSVKERLPKIQRFHRRFRKLLQEPVRYR------------APEASDVSAMSTVAEGES----------RDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRKCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENALAHQKFCMEWAKRSYREGLIRGRGELPKARSILIMDNLHAQTTDEFKGYLAKQCNTIAWLGPAECTDEVQPVDAGAGRFLKVEVG 948          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17517.4931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE5.790e-9663.74Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JD00_9PHAE6.130e-8371.19DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KH13_9PHAE7.330e-7652.67DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JKG3_9PHAE5.600e-7553.05DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KZ92_9PHAE2.230e-7452.29DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KDV1_9PHAE3.680e-7452.67C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JFX9_9PHAE3.460e-7353.05C2H2-type domain-containing protein n=15 Tax=Ectoc... [more]
A0A6H5JW14_9PHAE7.270e-6947.10DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JZQ9_9PHAE6.850e-6850.57DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K4R4_9PHAE1.190e-6751.15C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17517contigL-elsbetiae_contig17517:1742..2884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue1.1e-51
Seed eggNOG ortholog2880.D7FI08
Hectar predicted targeting categoryother localisation
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1143
Cds size786
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17517.4931.1prot_L-elsbetiae_contig17517.4931.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17517 2016..2801 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815729.7869313-UTR-L-elsbetiae_contig17517:1741..20151622815729.7869313-UTR-L-elsbetiae_contig17517:1741..2015Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17517 1742..2015 +
1691683065.0459595-UTR-L-elsbetiae_contig17517:1741..20151691683065.0459595-UTR-L-elsbetiae_contig17517:1741..2015Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17517 1742..2015 +
1622815729.8112314-UTR-L-elsbetiae_contig17517:2801..28841622815729.8112314-UTR-L-elsbetiae_contig17517:2801..2884Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17517 2802..2884 +
1691683065.068054-UTR-L-elsbetiae_contig17517:2801..28841691683065.068054-UTR-L-elsbetiae_contig17517:2801..2884Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17517 2802..2884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815729.798878-CDS-L-elsbetiae_contig17517:2015..28011622815729.798878-CDS-L-elsbetiae_contig17517:2015..2801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17517 2016..2801 +
1691683065.0587437-CDS-L-elsbetiae_contig17517:2015..28011691683065.0587437-CDS-L-elsbetiae_contig17517:2015..2801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17517 2016..2801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17517.4931.1

>prot_L-elsbetiae_contig17517.4931.1 ID=prot_L-elsbetiae_contig17517.4931.1|Name=mRNA_L-elsbetiae_contig17517.4931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=262bp
MNTDQVPLGFVNGQGTTWEVKGAQRVHVGQPFPGLEKRQCTVQPTIGPGG
KIMRCAIIFRGKGNGISKVEREAYDERVDVYFQPKAWADSQFCMEWLKRS
FRPSLMAPDGKVPKEQSVLLADNLHAQTTEPFREYLFKECNTLLWLLPAY
MTDMLQPLNAGYGYRFKVLVGKAARLVARVGREPRKVGNQRADSVGASCV
AYSLGGGGGHANRRGAGVPVSPLRKDGDSDDDGRDRGRPNQPRGPFRAVH
LLGCRGGEQPR*
back to top

mRNA from alignment at L-elsbetiae_contig17517:1742..2884+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17517.4931.1 ID=mRNA_L-elsbetiae_contig17517.4931.1|Name=mRNA_L-elsbetiae_contig17517.4931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1143bp|location=Sequence derived from alignment at L-elsbetiae_contig17517:1742..2884+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGAAGCGGAGGAGATCCAATTCCAAGAACAAGTCTGCAGACGAGCGCC TGCCAACAATCCAGAAGTTCCACAAGAGGTTCCGTGAGCTAAGGCGAGAG CTCCGGCGGTGTGAAAGGCGGGTAGTCCCAGGGTCGGGATGGTAGCAGGA AGCACCAGCCCCCGAAGAAGGGTCGGGAGGAGGACAACCGCAGCAGCCCG AGCAAGGATCGGGAGAACAACCGCAGCAGCCCGTTCGTGACCCCAAGTGG GGGCGCTTCCAGCTGAACGAGAGGATGAACACTGACCAAGTGCCGCTGGG GTTTGTCAATGGGCAGGGTACTACCTGGGAGGTAAAGGGGGCGCAGCGGG TCCACGTTGGCCAGCCGTTTCCCGGCCTGGAGAAGCGGCAGTGCACCGTG CAGCCTACGATTGGACCGGGTGGGAAGATAATGAGATGCGCCATCATTTT TCGCGGCAAAGGGAACGGCATCTCTAAGGTGGAAAGGGAAGCGTACGACG AGCGCGTGGATGTTTACTTCCAGCCGAAGGCTTGGGCCGACAGCCAATTC TGCATGGAGTGGCTGAAGCGCTCGTTTCGTCCGAGCCTGATGGCACCGGA CGGGAAGGTGCCCAAGGAGCAGTCAGTTCTCCTCGCTGACAACCTACACG CGCAGACAACTGAGCCGTTCCGTGAGTACCTCTTCAAGGAGTGCAACACG CTCCTTTGGCTCTTGCCGGCCTACATGACCGACATGCTCCAGCCACTCAA CGCTGGCTACGGATACAGGTTTAAGGTTCTAGTTGGGAAAGCTGCTAGAC TTGTGGCTCGAGTAGGGAGAGAACCTCGCAAGGTGGGAAACCAAAGGGCT GACAGCGTCGGAGCGTCGTGTGTTGCTTACTCACTGGGTGGCGGAGGCGG TCACGCAAATCGACGCGGAGCAGGAGTACCGGTTTCGCCTCTTCGAAAAG ACGGGGACAGCGATGACGACGGACGGGACCGGGGACGACCGAATCAACCC CGAGGGCCTTTCCGGGCCGTACATCTTCTTGGATGTAGAGGAGGAGAACA ACCCAGATGACGAGGACAAGGAGGATGACGACAGCCCTGAGCAGTTGGGC GGCAAGGGCTACGGTGGCCTGGATGAGCAGTCGGAGGACGGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17517:1742..2884+

>mRNA_L-elsbetiae_contig17517.4931.1 ID=mRNA_L-elsbetiae_contig17517.4931.1|Name=mRNA_L-elsbetiae_contig17517.4931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1572bp|location=Sequence derived from alignment at L-elsbetiae_contig17517:1742..2884+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACACTGACCAAGTGCCGCTGGGGTTTGTCAATGGGCAGGGTACTAC
CTGGGAGGTAAAGGGGGCGCAGCGGGTCCACGTTGGCCAGCCGTTTCCCG
GCCTGGAGAAGCGGCAGTGCACCGTGCAGCCTACGATTGGACCGGGTGGG
AAGATAATGAGATGCGCCATCATTTTTCGCGGCAAAGGGAACGGCATCTC
TAAGGTGGAAAGGGAAGCGTACGACGAGCGCGTGGATGTTTACTTCCAGC
CGAAGGCTTGGGCCGACAGCCAATTCTGCATGGAGTGGCTGAAGCGCTCG
TTTCGTCCGAGCCTGATGGCACCGGACGGGAAGGTGCCCAAGGAGCAGTC
AGTTCTCCTCGCTGACAACCTACACGCGCAGACAACTGAGCCGTTCCGTG
AGTACCTCTTCAAGGAGTGCAACACGCTCCTTTGGCTCTTGCCGGCCTAC
ATGACCGACATGCTCCAGCCACTCAACGCTGGCTACGGATACAGGTTTAA
GGTTCTAGTTGGGAAAGCTGCTAGACTTGTGGCTCGAGTAGGGAGAGAAC
CTCGCAAGGTGGGAAACCAAAGGGCTGACAGCGTCGGAGCGTCGTGTGTT
GCTTACTCACTGGGTGGCGGAGGCGGTCACGCAAATCGACGCGGAGCAGG
AGTACCGGTTTCGCCTCTTCGAAAAGACGGGGACAGCGATGACGACGGAC
GGGACCGGGGACGACCGAATCAACCCCGAGGGCCTTTCCGGGCCGTACAT
CTTCTTGGATGTAGAGGAGGAGAACAACCCAGATGAATGAACACTGACCA
AGTGCCGCTGGGGTTTGTCAATGGGCAGGGTACTACCTGGGAGGTAAAGG
GGGCGCAGCGGGTCCACGTTGGCCAGCCGTTTCCCGGCCTGGAGAAGCGG
CAGTGCACCGTGCAGCCTACGATTGGACCGGGTGGGAAGATAATGAGATG
CGCCATCATTTTTCGCGGCAAAGGGAACGGCATCTCTAAGGTGGAAAGGG
AAGCGTACGACGAGCGCGTGGATGTTTACTTCCAGCCGAAGGCTTGGGCC
GACAGCCAATTCTGCATGGAGTGGCTGAAGCGCTCGTTTCGTCCGAGCCT
GATGGCACCGGACGGGAAGGTGCCCAAGGAGCAGTCAGTTCTCCTCGCTG
ACAACCTACACGCGCAGACAACTGAGCCGTTCCGTGAGTACCTCTTCAAG
GAGTGCAACACGCTCCTTTGGCTCTTGCCGGCCTACATGACCGACATGCT
CCAGCCACTCAACGCTGGCTACGGATACAGGTTTAAGGTTCTAGTTGGGA
AAGCTGCTAGACTTGTGGCTCGAGTAGGGAGAGAACCTCGCAAGGTGGGA
AACCAAAGGGCTGACAGCGTCGGAGCGTCGTGTGTTGCTTACTCACTGGG
TGGCGGAGGCGGTCACGCAAATCGACGCGGAGCAGGAGTACCGGTTTCGC
CTCTTCGAAAAGACGGGGACAGCGATGACGACGGACGGGACCGGGGACGA
CCGAATCAACCCCGAGGGCCTTTCCGGGCCGTACATCTTCTTGGATGTAG
AGGAGGAGAACAACCCAGATGA
back to top