mRNA_L-elsbetiae_contig1750.4926.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1750.4926.1
Unique NamemRNA_L-elsbetiae_contig1750.4926.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1750.4926.1 vs. uniprot
Match: D8LJW2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW2_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 3.500e-103
Identity = 151/198 (76.26%), Postives = 167/198 (84.34%), Query Frame = 1 
Query:   22 RLFCVEAVVFPVSNPGSPGVPFRTFHDSSARRSAARGVLVSPVGGDVVQRGMSGISAAGFPSYTSSMLPIRFTNEQVQLNEGCLFRAHIDADWLETDIIAIEFRLLTSPLPENVPAPTEEAGPAAXXXXXXXXXPKNLREVGKVTLHAKCASSKGGMHRYHPLVFRHPYLCALDVTLHTALTSINHPGGPAGLAAAIA 615
            R+F VEAVVFPVSNP +PGVP RTFHD SARRS ARGVLV+P  GDV QRG SGISAAG PSYTSS+LPIRFTNE+VQLNEGCLFR HIDADW+ETD+IAIEFRLLT+PLPEN  APTE+   AA         P  L+EVGKVTLH KCASSKGG+HRYHPLVF+ P+LC +D+TLH ALTS+NHPGGPAGLAAAIA
Sbjct:   12 RVFGVEAVVFPVSNPYAPGVPVRTFHDPSARRSTARGVLVNPAEGDVDQRGSSGISAAGLPSYTSSLLPIRFTNEEVQLNEGCLFRVHIDADWVETDVIAIEFRLLTTPLPENDAAPTEDVIAAAGATVTPEKKPITLKEVGKVTLHTKCASSKGGLHRYHPLVFKQPHLCVVDITLHMALTSVNHPGGPAGLAAAIA 209
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1750.4926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJW2_ECTSI3.500e-10376.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1750contigL-elsbetiae_contig1750:4430..7309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_009890.1
Exons4
Model size618
Cds size618
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1750.4926.1prot_L-elsbetiae_contig1750.4926.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1750 4430..7309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815729.3812957-CDS-L-elsbetiae_contig1750:4429..46721622815729.3812957-CDS-L-elsbetiae_contig1750:4429..4672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1750 4430..4672 +
1691683064.8243432-CDS-L-elsbetiae_contig1750:4429..46721691683064.8243432-CDS-L-elsbetiae_contig1750:4429..4672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1750 4430..4672 +
1622815729.3955245-CDS-L-elsbetiae_contig1750:5245..54431622815729.3955245-CDS-L-elsbetiae_contig1750:5245..5443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1750 5246..5443 +
1691683064.834354-CDS-L-elsbetiae_contig1750:5245..54431691683064.834354-CDS-L-elsbetiae_contig1750:5245..5443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1750 5246..5443 +
1622815729.4162998-CDS-L-elsbetiae_contig1750:6277..63941622815729.4162998-CDS-L-elsbetiae_contig1750:6277..6394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1750 6278..6394 +
1691683064.8426573-CDS-L-elsbetiae_contig1750:6277..63941691683064.8426573-CDS-L-elsbetiae_contig1750:6277..6394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1750 6278..6394 +
1622815729.4293153-CDS-L-elsbetiae_contig1750:7249..73091622815729.4293153-CDS-L-elsbetiae_contig1750:7249..7309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1750 7250..7309 +
1691683064.8516066-CDS-L-elsbetiae_contig1750:7249..73091691683064.8516066-CDS-L-elsbetiae_contig1750:7249..7309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1750 7250..7309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1750.4926.1

>prot_L-elsbetiae_contig1750.4926.1 ID=prot_L-elsbetiae_contig1750.4926.1|Name=mRNA_L-elsbetiae_contig1750.4926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
KNKNQKPRLFCVEAVVFPVSNPGSPGVPFRTFHDSSARRSAARGVLVSPV
GGDVVQRGMSGISAAGFPSYTSSMLPIRFTNEQVQLNEGCLFRAHIDADW
LETDIIAIEFRLLTSPLPENVPAPTEEAGPAAPAPPQEAAPPKNLREVGK
VTLHAKCASSKGGMHRYHPLVFRHPYLCALDVTLHTALTSINHPGGPAGL
AAAIAA
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mRNA from alignment at L-elsbetiae_contig1750:4430..7309+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1750.4926.1 ID=mRNA_L-elsbetiae_contig1750.4926.1|Name=mRNA_L-elsbetiae_contig1750.4926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2880bp|location=Sequence derived from alignment at L-elsbetiae_contig1750:4430..7309+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAACAAAAACCAAAAACCCAGGCTGTTCTGCGTGGAAGCGGTGGTGTT
TCCGGTTTCGAACCCGGGCTCCCCCGGAGTCCCGTTCCGCACGTTTCACG
ACTCTTCCGCCAGGCGTTCGGCGGCTCGGGGTGTCCTGGTGAGCCCCGTC
GGGGGGGACGTGGTCCAGCGCGGCATGTCGGGGATCAGCGCGGCGGGCTT
CCCGTCGTACACGTCAAGCATGCTGCCGATCCGCTTCACCAACGTAAGAG
ACCAGGGGGGGGAGGGGGGTCAGAGAAGGAGAGGGAGAGGGGGGGGAGGG
GGGGGGGGTGAGAGGAAGGGGGGGAAGGAGATAAATTTACAGGACGGAAA
AAGTGCGACCATCGCTATTATGTATGGTACTATTTATTGGAAAATACTAA
AAAAAAGTGTACATTCATACATAAAAGAGAGGACAAAAGTGACACTTCTG
GTGAGAGACGGCTGCCGTGTTTTTTCATGATCGGTCATCTCGCGTGCAAG
CGCCACCACGCGGCCGGCGCGCTCTTCTAGTAGAATCGGTCCGGGCCTTT
GTTTCGTGTCGGGGTGTCGGAGCTCGGCGGAAGTCGGGTTTGAGACCAAA
GACAGGCATGCACACTCACTAACTGCAAATGTAGATTTTATGTGATCTGT
ATGCACGTGCTTCAAATATAGGCCGAACGAAGCCTTTTCGGAGGTTAGCG
GATAAATAGCCAAATTCACGTGCATACATACCCACAAGGGTGAATAAAGC
AAACCGAGCCCCCCAGATCCCCCCCCCTCATGCCGCCGCCGCGGTGCCGC
CACAAAAAAAAAACAGGAGCAAGTGCAGCTGAACGAGGGCTGCCTCTTCC
GCGCCCACATCGACGCTGATTGGCTGGAGACTGACATCATCGCGATCGAG
TTCCGCCTGCTGACCTCCCCGCTGCCGGAGAACGTGCCCGCTCCCACGGA
GGAGGCCGGCCCGGCGGCCCCCGCCCCGCCGCAGGAGGCGGCCCCGCCGA
AGAATCTCAGGGAGGTATGCCTGTACCAAACATAATACATTGTAGGTATA
GATACTACAAAATGGATGCATAAATAGGAAGTCGTTTCAGTTTTTCTTCG
TCATCTTGTTTCGCTTCGATGATATTTGTTTTGGTACTCTTTTTGACTTT
TTTTTATCCCGGTTGTGCATGCTTGCCTGCTTTTTTCGCTCTCATCGCGA
ACACATCGGTCTAATCGCCGGCTTGTCTAAACACACGCCTCCTGGCCCCC
CATGGTCACTCAGGCTACGCGCGCGCGCACACCACGCTGATCAAGGTGGA
GATCGATTGAATTGTCGAGCTCGCAGAGAGGTTTATATCAGGAATAGAGT
CCTTCCGTCCACGAACTAAGATATGTGGAGACGATGGGCGGGAGGGAGCC
CCGTCGATGGTTCTCCATTTTTTCTTTCACTACCCCCCCCCCCCCCCCCC
CCCCGCCTCCCCCGAGCGGATTGTGCGCGTTCCTGTCTTTTCGCAGATGC
GAACCAAGGGAGGTAGGTATGTATATATATAGCCTTGCGAGGAGAGAGCC
CGTTTCGCACACAGTTTTGCCGCTTGTAGCCTATGTAAGGGTCTCCTTGC
GCTGTTGCATGTTTGCAGCGAGTGGTGCAGACCAAGAAGGTTGATGGGAA
TTCGTTGCGCTGGAAGGGGGTTGATGCATAAAAAAAAAAAAATATACGCA
CGAAAGGCAGGTACATATGTATGTCCGTACATATGGCACATCATGACACC
TTTTTGGCCGAACGCTTTTTTTTTTTCCACCGCCCTGTTGTTGTTGTTGT
TGTTGTTGTTGTTTGTTGTTTTTTTCTTTCTCCGTGGCGTGGATGCAGGT
CGGGAAGGTGACTCTCCACGCCAAGTGCGCCTCCTCGAAGGGCGGCATGC
ATCGCTACCACCCCCTGGTCTTCAGGCATCCGTATCTGTGCGCCCTGGAC
GTCACGTTGCACACGGTACATATGTATGATACCCCGTATGTATATACTTC
TATGTATTTTACTTCGTAGGTGTCGTGCAGTTCCCGTTGCGCACCGACGC
CCACGGCCCCAAACGAATTGTTTGTTGTTGCTGTCTTCACACGTTAAAAA
CCGTTCCGATCTCTCTATTATCCAGGACACCTCCATTGAGTCCGTAGTAA
CAATCCAACACTAACGTGGTCGATTCCCGTGGTCGCAAGATAACTTACCC
TAAAAAAAGGGTAGACTGCAAAATGAAAATAAATAAAATGGACCCGGAGG
GTCCGCAAAGCAAAAAAAGCCAAATATCAGACACAGAACAGATAAGTGTG
TGGAGTCTGGAGCCCTCAGCTCCCCTCTACACGCTAAACGAATGGAATGT
AGAAAACAGCCAGGGCCTTTAGATAACACGCGTATGTGTGTATGCAGGTC
GGATAGGATATTCCGGGTCGTCCGCGTACTCCAGCGATGCGTACATTACA
TATTTACGCGCGTATTGTTTCCTGCCGGTTCGCGCTGTTGCTTGGTATTT
GTGTGCGTCTCGATTGCTGCTTGCTGTACATGAAGATTCGAACGGGGCTC
GTTTACACCTACCTGTCCGTGTGCGGGCCTTGCTTGGTTGAGCGCATGGT
ACTTGTAGCGTACCATGTAAATAGCAGCATTTATTCCAAGGGCACGCTTA
CAGCAGTAGTGGAGGCGAAGCCTTCCTCTGCTGCTTTCGACCAATGTTTC
GGCGCGGCAAAAGAAAACCCCCCGTAACGATACAATACACCCCCCCGAAA
ACTAATCACGCCCCCCCCCCTGTTGTACGCATTGCCGGTACGGCACCCCT
ATCACTGCTTCCGCGAGCAGGCTCTCACCTCCATCAACCACCCGGGGGGC
CCCGCCGGGCTGGCGGCGGCCATCGCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1750:4430..7309+

>mRNA_L-elsbetiae_contig1750.4926.1 ID=mRNA_L-elsbetiae_contig1750.4926.1|Name=mRNA_L-elsbetiae_contig1750.4926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig1750:4430..7309+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAACAAAAACCAAAAACCCAGGCTGTTCTGCGTGGAAGCGGTGGTGTT
TCCGGTTTCGAACCCGGGCTCCCCCGGAGTCCCGTTCCGCACGTTTCACG
ACTCTTCCGCCAGGCGTTCGGCGGCTCGGGGTGTCCTGGTGAGCCCCGTC
GGGGGGGACGTGGTCCAGCGCGGCATGTCGGGGATCAGCGCGGCGGGCTT
CCCGTCGTACACGTCAAGCATGCTGCCGATCCGCTTCACCAACAAAAACA
AAAACCAAAAACCCAGGCTGTTCTGCGTGGAAGCGGTGGTGTTTCCGGTT
TCGAACCCGGGCTCCCCCGGAGTCCCGTTCCGCACGTTTCACGACTCTTC
CGCCAGGCGTTCGGCGGCTCGGGGTGTCCTGGTGAGCCCCGTCGGGGGGG
ACGTGGTCCAGCGCGGCATGTCGGGGATCAGCGCGGCGGGCTTCCCGTCG
TACACGTCAAGCATGCTGCCGATCCGCTTCACCAACGAGCAAGTGCAGCT
GAACGAGGGCTGCCTCTTCCGCGCCCACATCGACGCTGATTGGCTGGAGA
CTGACATCATCGCGATCGAGTTCCGCCTGCTGACCTCCCCGCTGCCGGAG
AACGTGCCCGCTCCCACGGAGGAGGCCGGCCCGGCGGCCCCCGCCCCGCC
GCAGGAGGCGGCCCCGCCGAAGAATCTCAGGGAGGAGCAAGTGCAGCTGA
ACGAGGGCTGCCTCTTCCGCGCCCACATCGACGCTGATTGGCTGGAGACT
GACATCATCGCGATCGAGTTCCGCCTGCTGACCTCCCCGCTGCCGGAGAA
CGTGCCCGCTCCCACGGAGGAGGCCGGCCCGGCGGCCCCCGCCCCGCCGC
AGGAGGCGGCCCCGCCGAAGAATCTCAGGGAGGTCGGGAAGGTGACTCTC
CACGCCAAGTGCGCCTCCTCGAAGGGCGGCATGCATCGCTACCACCCCCT
GGTCTTCAGGCATCCGTATCTGTGCGCCCTGGACGTCACGTTGCACACGG
TCGGGAAGGTGACTCTCCACGCCAAGTGCGCCTCCTCGAAGGGCGGCATG
CATCGCTACCACCCCCTGGTCTTCAGGCATCCGTATCTGTGCGCCCTGGA
CGTCACGTTGCACACGGCTCTCACCTCCATCAACCACCCGGGGGGCCCCG
CCGGGCTGGCGGCGGCCATCGCCGCCGCTCTCACCTCCATCAACCACCCG
GGGGGCCCCGCCGGGCTGGCGGCGGCCATCGCCGCC
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