mRNA_L-elsbetiae_contig1749.4916.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1749.4916.1
Unique NamemRNA_L-elsbetiae_contig1749.4916.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1749.4916.1 vs. uniprot
Match: D8LEK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK8_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.490e-12
Identity = 29/52 (55.77%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    4 VRRWINSGSLGLLTAIIVFYVSVGVPIRRLVFDPLESPDPRVAEALARRKEG 159
            V RW+N+  +G ++A ++F++S+G+PIR+LVFDPLES DPRV+ ALA+R++G
Sbjct:  269 VARWVNTRIMGFISATVIFFLSLGLPIRQLVFDPLESSDPRVSRALAKRRQG 320
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BLAST of mRNA_L-elsbetiae_contig1749.4916.1 vs. uniprot
Match: D8LEL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL1_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 3.120e-6
Identity = 22/48 (45.83%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   13 WINSGSLGLLTAIIVFYVSVGVPIRRLVFDPLESPDPRVAEALARRKE 156
            WI    +  +++ ++F +S+G P R+L F+PLES DP V++ALARRK+
Sbjct:   43 WITERYIAFISSCVMFSLSLGAPARQLFFNPLESSDPEVSDALARRKD 90
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1749.4916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEK8_ECTSI1.490e-1255.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEL1_ECTSI3.120e-645.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1749contigL-elsbetiae_contig1749:9286..10953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size265
Cds size261
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1749.4916.1prot_L-elsbetiae_contig1749.4916.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1749 9288..10953 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.4316504-CDS-L-elsbetiae_contig1749:9287..93661622815728.4316504-CDS-L-elsbetiae_contig1749:9287..9366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1749 9288..9366 -
1691683064.1824472-CDS-L-elsbetiae_contig1749:9287..93661691683064.1824472-CDS-L-elsbetiae_contig1749:9287..9366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1749 9288..9366 -
1622815728.4429886-CDS-L-elsbetiae_contig1749:9744..98581622815728.4429886-CDS-L-elsbetiae_contig1749:9744..9858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1749 9745..9858 -
1691683064.1912377-CDS-L-elsbetiae_contig1749:9744..98581691683064.1912377-CDS-L-elsbetiae_contig1749:9744..9858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1749 9745..9858 -
1622815728.458438-CDS-L-elsbetiae_contig1749:10885..109531622815728.458438-CDS-L-elsbetiae_contig1749:10885..10953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1749 10886..10953 -
1691683064.1996388-CDS-L-elsbetiae_contig1749:10885..109531691683064.1996388-CDS-L-elsbetiae_contig1749:10885..10953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1749 10886..10953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1749.4916.1

>prot_L-elsbetiae_contig1749.4916.1 ID=prot_L-elsbetiae_contig1749.4916.1|Name=mRNA_L-elsbetiae_contig1749.4916.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
SVRRWINSGSLGLLTAIIVFYVSVGVPIRRLVFDPLESPDPRVAEALARR
KEGGGTLLAMGDHEASAAYSTGVGAFDSDDEVHAEMT
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mRNA from alignment at L-elsbetiae_contig1749:9286..10953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1749.4916.1 ID=mRNA_L-elsbetiae_contig1749.4916.1|Name=mRNA_L-elsbetiae_contig1749.4916.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1668bp|location=Sequence derived from alignment at L-elsbetiae_contig1749:9286..10953- (Laminarionema elsbetiae ELsaHSoW15)
TCCGTTCGCCGTTGGATCAATAGCGGCTCGCTGGGGCTACTCACGGCGAT
CATTGTGTTTTATGTCAGGTGAGAGCCAGCCACGGGGCTTTTTTTGCTGT
TCGCGTCTGTCTGTGCACCCCCCCCCGGCGGCGCATCCTTAAGTATAACC
GGTAGCCGTTTTTGCTACAGGTAGGGTCGATCCTGCTGTGACCTGCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCGTGCGGGGGAATTGTGAGTGTTCGTG
CTTTCCACAGGTATTTCCTTCTCTCTTCACACACACACTCGATTTTTCTG
GAAAGGACGAACTTCGTTTCCTTCAGCCAGTGTGAGAACGACACCGGTAG
CCCCGAGAAAAGCCAAGCTTGAGAAGCTGGTACATTCGAAATATAAATAG
TTAATTTGCTTGCTCTCGAGCGAAAATGGAAGGGTTTCACAGGTGGAGGG
TAGGTATTTTTGGTTGGACCAATGAGTACTCCTGTTCAATGAGGATGGTT
GTCGTCATATGTGGTGTGCGTATTCGCTTTTTACATCTATATCTGGCTCT
AGACTTTGACCGACGTCACAAAACGAAAATACAGTTCTCGGTACTGTGTG
TGTGTGTGTGTTCTTCCCATTTATTTTGGCGACAGTTCCCCCAAGTGGAG
ACGTGTACTACACCTTGCGGTGTACTTAGAGGTACTATGCATTTGTCTGT
ACGACTAGAACCAACCGGGGTCACACAGGAGGGAGTGAACACTGGGGCTT
TTTTCTTCTCTTTTATTTATTCGTTTTTGCCCCACCTTCCTCCTGCGGTT
CCTGCCTTGGGTTTTATCGCGAGAAGGGTTCAGCTGTCCCTTTCCCTCGT
CAACTTGTTTACGTCGAAGTTTGGTACTCACGAGCTTTTCAGCTTTTATC
GCTTTCACCTGCAAGGTCGCAAAAGAAACGCTTCTGCTTGGGATTGAACT
CCAGACTTTGCTGCTAGTGGTGCCGCAGAAATGGAGTTGGTGACTCCTGC
ATCAAAGAAACGGAGAGGCCAACCACCTCCATCTACCTTTTGCTGTTGAC
CATGAGCCTACTAACCGCGTCGCATGCACACCTGGTCCGCCGCAGCGTTG
GGGTGCCTATCCGCCGGCTCGTGTTCGACCCGCTGGAGTCACCCGACCCT
AGGGTGGCCGAAGCTCTGGCCAGGCGAAAGGAGGGTGGAGGCACGTTGCT
AGCGATGGGGTAAGCTCTCTCAGTTGGCGTGGGAAAAAATTAGCTTTTGC
CTGCGCCAGGATGCACCGCGGTTGTTTGCCGCTACAATATATGCGTAGGG
CGGTTCTCACTCACTCCGCGGAAAGCTTAACTGATTGTGATAAGGATGTG
TTAAAAAACGTACGGCCGAGGTATCTATATTAGGCGGCCCAGAGGGTAAA
GCGTCGTCCTGCAGATAACTTTTTTCCACGTCACATGCAGTAGCCCCTCT
CTCTGCAAAAATTATCGAGACTTAATACATTGGTAATGTACATACATAGA
GAGATACTGTTTATACAAACGAAGTTCGGACGTAGCTCGCATCATTCGTT
GAACGTCCTGCTGCTACTGCTGCTGCCATATCTGCAGAGACCACGAAGCG
TCTGCGGCTTATTCTACCGGGGTGGGGGCTTTCGACTCAGACGACGAAGT
ACACGCGGAGATGACCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1749:9286..10953-

>mRNA_L-elsbetiae_contig1749.4916.1 ID=mRNA_L-elsbetiae_contig1749.4916.1|Name=mRNA_L-elsbetiae_contig1749.4916.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig1749:9286..10953- (Laminarionema elsbetiae ELsaHSoW15)
TCCGTTCGCCGTTGGATCAATAGCGGCTCGCTGGGGCTACTCACGGCGAT
CATTGTGTTTTATGTCAGTCCGTTCGCCGTTGGATCAATAGCGGCTCGCT
GGGGCTACTCACGGCGATCATTGTGTTTTATGTCAGCGTTGGGGTGCCTA
TCCGCCGGCTCGTGTTCGACCCGCTGGAGTCACCCGACCCTAGGGTGGCC
GAAGCTCTGGCCAGGCGAAAGGAGGGTGGAGGCACGTTGCTAGCGATGGG
CGTTGGGGTGCCTATCCGCCGGCTCGTGTTCGACCCGCTGGAGTCACCCG
ACCCTAGGGTGGCCGAAGCTCTGGCCAGGCGAAAGGAGGGTGGAGGCACG
TTGCTAGCGATGGGAGACCACGAAGCGTCTGCGGCTTATTCTACCGGGGT
GGGGGCTTTCGACTCAGACGACGAAGTACACGCGGAGATGACCAGACCAC
GAAGCGTCTGCGGCTTATTCTACCGGGGTGGGGGCTTTCGACTCAGACGA
CGAAGTACACGCGGAGATGACC
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