mRNA_L-elsbetiae_contig17482.4913.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17482.4913.1
Unique NamemRNA_L-elsbetiae_contig17482.4913.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17482.4913.1 vs. uniprot
Match: D7FUK9_ECTSI (Sterol or diacylglycerol O-acyltransferase, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUK9_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 3.400e-63
Identity = 122/211 (57.82%), Postives = 141/211 (66.82%), Query Frame = 1 
Query:    1 GCWWLLFDEPRDFLRMWSVPVHRWLSACVHWPMLELTR------GGTGAP-----TATTTKTAGAPTTKISKGGWLPAVLATFLVSGVFHEAIVYVAMRGSCWPFNTFLLCVAGFLITTWDVVFPKLHSRPAAGD--GKPSASASGGGSAASHQGPKEDGDVGGGGATANVVRAYGDRGHVSAFFFSFLIQLSAFIADTAAWLWWRHIHMK 594
            GCWWLLFDEPRDFLRMWS PVHRWLS CVHWPMLEL         GT +P     +  T + AG P    SK  W+PAVLATF+VSGVFHEA+VY+AMRG+CWPFNTFLLCV G L+  WD+VFP    +P++    G P  +A+          P+ +G     GA   VVRAYG RG +SA  F   +QLSAFIAD AAWLWWRHIHMK
Sbjct:  341 GCWWLLFDEPRDFLRMWSTPVHRWLSTCVHWPMLELCSTSDEGVDGTKSPPSAELSTATAEVAGDP----SKWTWVPAVLATFVVSGVFHEAVVYIAMRGTCWPFNTFLLCVGGVLVIFWDIVFPLPDLKPSSESEGGSPPQTAT--------LSPRNEG-----GAGKKVVRAYGHRGRMSAAAFCVSVQLSAFIADCAAWLWWRHIHMK 534
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BLAST of mRNA_L-elsbetiae_contig17482.4913.1 vs. uniprot
Match: D7FQV8_ECTSI (Diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV8_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 5.290e-18
Identity = 56/148 (37.84%), Postives = 74/148 (50.00%), Query Frame = 1 
Query:    1 GCWWLLFDEPRDFLRMWSVPVHRWLSACVHWPMLEL----------------------TRGGTGA--------PTATTTKTAGAPTTKISKG----GWLPAVLATFLVSGVFHEAIVYVAMRGSCWPFNTFLLCVAGFLITTWDVVFP 342
            G WWL+ D+ RD+ R+WS PVHRWLS  V  PM+E+                      T G +G         P  T++ T G        G     WL +V+ +FLVSGV HEA+ +VAMR + WPF+TF L V   +   WD +FP
Sbjct:  441 GPWWLVVDDVRDYFRLWSAPVHRWLSESVQRPMIEVGQREALRHRRRRVAREEDKPPATNGNSGGSNGVHDYRPKGTSSTTGGKARHGADAGIVTRWWLASVVCSFLVSGVVHEAVGFVAMRRTVWPFSTFFLAVTASMAPFWDTLFP 588
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BLAST of mRNA_L-elsbetiae_contig17482.4913.1 vs. uniprot
Match: D7FQW2_ECTSI (Sterol or diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW2_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.940e-11
Identity = 48/152 (31.58%), Postives = 71/152 (46.71%), Query Frame = 1 
Query:    1 GCWWLLFDEPRDFLRMWSVPVHRWLSACVHWPML--------ELTRGGTGAPTATTTKTAGAPTTKISKGG----------------------------W--LPAVLATFLVSGVFHEAIVYVAMRGSCWPFNTFLLCVAGFLITTWDVVFP 342
            G WWLL +EP    R+WS PVHRW+S+C++ P++        +  R G G         AG    K  +                              W  L A+ + FL S + HEA+ +VAMR +CWP +TF L ++ F+I+ WD ++P
Sbjct:  478 GPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPVVGHKNAAFSQPGRSGGGVRRGL----AGTLCRKSEEXXXXXXXXXXXXXXXXXXXXXXXQTQRRWTWRRLLALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYP 625
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BLAST of mRNA_L-elsbetiae_contig17482.4913.1 vs. uniprot
Match: A0A6H5J9L7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9L7_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 8.890e-11
Identity = 48/169 (28.40%), Postives = 70/169 (41.42%), Query Frame = 1 
Query:    1 GCWWLLFDEPRDFLRMWSVPVHRWLSACVHWPMLELTRGGTGAPTATTTKTAGAPTTKISKGG-----------------------------------------------------W--LPAVLATFLVSGVFHEAIVYVAMRGSCWPFNTFLLCVAGFLITTWDVVFP 342
            G WWLL +EP    R+WS PVHRW+S+C++ P++               K+A  P    S GG                                                     W  L A+ + FL S + HEA+ +VAMR +CWP +TF L ++ F+I+ WD ++P
Sbjct:  477 GPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPIVGH-------------KSAAIPQPGCSSGGVRRGLAGTSCREPEEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRWTWRRLMALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYP 632
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17482.4913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FUK9_ECTSI3.400e-6357.82Sterol or diacylglycerol O-acyltransferase, partia... [more]
D7FQV8_ECTSI5.290e-1837.84Diacylglycerol O-acyltransferase n=1 Tax=Ectocarpu... [more]
D7FQW2_ECTSI2.940e-1131.58Sterol or diacylglycerol O-acyltransferase n=1 Tax... [more]
A0A6H5J9L7_9PHAE8.890e-1128.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17482contigL-elsbetiae_contig17482:562..2877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSterol or diacylglycerol O-acyltransferase, partial
Ec32 orthologEc-02_002850.1
Exons1
Model size2316
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17482.4913.1prot_L-elsbetiae_contig17482.4913.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17482 607..1161 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.2839491-UTR-L-elsbetiae_contig17482:561..6061622815728.2839491-UTR-L-elsbetiae_contig17482:561..606Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17482 562..606 +
1691683064.1030462-UTR-L-elsbetiae_contig17482:561..6061691683064.1030462-UTR-L-elsbetiae_contig17482:561..606Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17482 562..606 +
1622815728.3046246-UTR-L-elsbetiae_contig17482:1161..28771622815728.3046246-UTR-L-elsbetiae_contig17482:1161..2877Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17482 1162..2877 +
1691683064.131358-UTR-L-elsbetiae_contig17482:1161..28771691683064.131358-UTR-L-elsbetiae_contig17482:1161..2877Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17482 1162..2877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.294246-CDS-L-elsbetiae_contig17482:606..11611622815728.294246-CDS-L-elsbetiae_contig17482:606..1161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17482 607..1161 +
1691683064.1151981-CDS-L-elsbetiae_contig17482:606..11611691683064.1151981-CDS-L-elsbetiae_contig17482:606..1161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17482 607..1161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17482.4913.1

>prot_L-elsbetiae_contig17482.4913.1 ID=prot_L-elsbetiae_contig17482.4913.1|Name=mRNA_L-elsbetiae_contig17482.4913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
MWSVPVHRWLSACVHWPMLELTRGGTGAPTATTTKTAGAPTTKISKGGWL
PAVLATFLVSGVFHEAIVYVAMRGSCWPFNTFLLCVAGFLITTWDVVFPK
LHSRPAAGDGKPSASASGGGSAASHQGPKEDGDVGGGGATANVVRAYGDR
GHVSAFFFSFLIQLSAFIADTAAWLWWRHIHMKA*
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mRNA from alignment at L-elsbetiae_contig17482:562..2877+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17482.4913.1 ID=mRNA_L-elsbetiae_contig17482.4913.1|Name=mRNA_L-elsbetiae_contig17482.4913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2316bp|location=Sequence derived from alignment at L-elsbetiae_contig17482:562..2877+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTGCTGGTGGCTGCTCTTCGACGAGCCGCGCGACTTCCTCCGGATGTG
GTCGGTGCCGGTTCACCGCTGGCTGTCCGCGTGCGTGCACTGGCCCATGC
TCGAGCTCACCCGCGGCGGCACGGGGGCCCCGACAGCCACAACCACGAAA
ACGGCAGGGGCACCGACGACGAAAATCTCGAAGGGGGGGTGGCTGCCTGC
CGTGCTCGCCACCTTCCTCGTCAGCGGGGTCTTCCACGAAGCGATCGTGT
ACGTGGCCATGCGGGGCAGCTGCTGGCCGTTCAATACCTTTCTCCTCTGC
GTCGCCGGGTTCCTCATCACGACCTGGGACGTGGTTTTCCCCAAGCTCCA
TTCCCGGCCGGCCGCTGGAGACGGGAAGCCGTCGGCCTCGGCTAGTGGCG
GAGGCTCAGCGGCTTCGCACCAGGGTCCGAAAGAGGACGGAGATGTTGGT
GGTGGTGGTGCTACTGCCAATGTGGTGAGGGCTTACGGGGACCGCGGCCA
CGTGTCGGCGTTTTTTTTCAGCTTTTTGATCCAGCTGTCGGCGTTCATCG
CGGACACCGCGGCGTGGCTCTGGTGGCGGCACATCCACATGAAGGCATGA
GGCTGCTGTGTGTAGTCGGTGTTCTTGGTGTCAACGTTGTGAGGGCGTGG
TGTTTCGCTGCTGTCTTGTTTCTATGTGGGCTTGAACTCCTTTGGCGTTT
TGCGAAATTGCGGAGGAACGAAAGCTGCTATTGTACTGAGTTTAGGGCGG
AGAAAAATAAGGTTTATGCCTCAAAACGAAGAAAAGGTGTTCGGGTGCTT
TGGATATGAGTTTGATCTGTGTGTCCCCTCCGGGGGTTACGTGTGTAGGT
ACGATACGGTATGTCGGGGGCGGCCGTGAGAGAGAGAAGGTCCGCGCGCT
GGCCTGCGCGGAGGCAGCAATAGAAGTATGATGACTATGTCCGTTCCTGG
ATTAACTTAGTTCCTAAACTCAACACTCATACCCCGCAAGACAGTAGTGC
GGGTGGTGCCCTCGGCAAATACACCAACGAAAGGTGCCAACGGAGTCAAG
GTGGTGAGACAGCTCCAGTAGTCTGTGCATGCGTGGGGCGCTGCGTTCAC
GACGACGCCGACATTCGTGTGGAGAAAACACACGTGGGGTGTCCCCGCGA
AAGTGTGGTGGAGTTTATGTGTTGGGTGTTGATGTTTTGTCTCGCGCAGG
CGTGTAGCAAATAGCGCTTTGGGAGGAGCCCTTCCTCCTTTTTTTAGTTT
CCGATCAATTTAGTTGCAACCACTCTGTTTGTTTGGCTTTTCGTAGCGTT
GAGGGTCCGGAGGAACGCCACCTGGACCAGAGTACGCTGTAGTCCAGCAG
CAGCGGAATAAATTTAGCACGCGCCTTTGTAGGCCCTGTAAGTATCCACC
AGTGCTGTAATTCTGTGGCGCTTGTGTTGCGGCGCTTAGCCGTGCACCAA
GTTTCGACCACGGCGCCGAAAGCCGTGGTTTTTGTGATGAGAGCGCGGGC
GACCGGGAGAGGTTCCATTCGAATCGGAGGATGGGCGAATGCTCTGGGTT
CGGCCTGAATGTATCCTCTGCTCGTTGTGAGGTGTAATTTTCGAACTTGT
TGTTGGTCGCACGCCCCCAACGCCGTGAAGTAGAGTTACACCTGAGTGTA
GAGCCCCCTCCCGACGAAAGTTGTATTTGTAGTCCTCGGTTAGGTCCAAA
AGGGATTGAAACTGATGTGCATTCGGGACGGCGCGACGGCGAGCGGTACA
TTTATGCGACACCAGCGGTATCCTGTTTCATTTTGGAGTCCACTGAACTC
CAGCAGGCGTCGGTAGCCGACAGACGCGACTTTTTTTTCGCGTCCAGGGT
GGTGTAAAAGAGAGAGAGAGAGAAAAGGTGCCCGCAGTTCTCTGATTGGC
CAATTTTTGAAAGAGATCTCGGGCACCTGTTTGAAAGAATGATCATATTC
TCAACTGGCCAGAAATCATTTGAAAGGAGAGGATTTTGTGCAGAGGCAAA
GGGGGTGCCCGCAGTTTTTCGGCCGATTTTTTGACGGACCGTTCCGAAGA
AAGGCGAAATACCCCTGATCGACCAGTGACGACGCCACTCACGTTCGGGG
TGTAAACTACTGTATTCTTTATTTTCGAATCATTTTTTTTCAAATTGCCC
GTGGATAAGTGAGTGATTGATAGACTGATGAATTTGAGTTTTTCGAGTTT
CCCCGAAAAGGCGACCTCGTGGCCGTGCCTGACGTCTTCGGTCGACCACG
TTTTTTTCGACCTCACGAAATTTCCTCTCAAATTTTTTGACCAATCAGAA
AACTGCGGGCACCTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17482:562..2877+

>mRNA_L-elsbetiae_contig17482.4913.1 ID=mRNA_L-elsbetiae_contig17482.4913.1|Name=mRNA_L-elsbetiae_contig17482.4913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig17482:562..2877+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGTCGGTGCCGGTTCACCGCTGGCTGTCCGCGTGCGTGCACTGGCC
CATGCTCGAGCTCACCCGCGGCGGCACGGGGGCCCCGACAGCCACAACCA
CGAAAACGGCAGGGGCACCGACGACGAAAATCTCGAAGGGGGGGTGGCTG
CCTGCCGTGCTCGCCACCTTCCTCGTCAGCGGGGTCTTCCACGAAGCGAT
CGTGTACGTGGCCATGCGGGGCAGCTGCTGGCCGTTCAATACCTTTCTCC
TCTGCGTCGCCGGGTTCCTCATCACGACCTGGGACGTGGTTTTCCCCAAG
CTCCATTCCCGGCCGGCCGCTGGAGACGGGAAGCCGTCGGCCTCGGCTAG
TGGCGGAGGCTCAGCGGCTTCGCACCAGGGTCCGAAAGAGGACGGAGATG
TTGGTGGTGGTGGTGCTACTGCCAATGTGGTGAGGGCTTACGGGGACCGC
GGCCACGTGTCGGCGTTTTTTTTCAGCTTTTTGATCCAGCTGTCGGCGTT
CATCGCGGACACCGCGGCGTGGCTCTGGTGGCGGCACATCCACATGAAGG
CATGAATGTGGTCGGTGCCGGTTCACCGCTGGCTGTCCGCGTGCGTGCAC
TGGCCCATGCTCGAGCTCACCCGCGGCGGCACGGGGGCCCCGACAGCCAC
AACCACGAAAACGGCAGGGGCACCGACGACGAAAATCTCGAAGGGGGGGT
GGCTGCCTGCCGTGCTCGCCACCTTCCTCGTCAGCGGGGTCTTCCACGAA
GCGATCGTGTACGTGGCCATGCGGGGCAGCTGCTGGCCGTTCAATACCTT
TCTCCTCTGCGTCGCCGGGTTCCTCATCACGACCTGGGACGTGGTTTTCC
CCAAGCTCCATTCCCGGCCGGCCGCTGGAGACGGGAAGCCGTCGGCCTCG
GCTAGTGGCGGAGGCTCAGCGGCTTCGCACCAGGGTCCGAAAGAGGACGG
AGATGTTGGTGGTGGTGGTGCTACTGCCAATGTGGTGAGGGCTTACGGGG
ACCGCGGCCACGTGTCGGCGTTTTTTTTCAGCTTTTTGATCCAGCTGTCG
GCGTTCATCGCGGACACCGCGGCGTGGCTCTGGTGGCGGCACATCCACAT
GAAGGCATGA
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