mRNA_L-elsbetiae_contig1744.4899.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1744.4899.1
Unique NamemRNA_L-elsbetiae_contig1744.4899.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1744.4899.1 vs. uniprot
Match: D7FUK7_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUK7_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 8.970e-24
Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 1 
Query:    1 SGFLSPAALEVDLSGCSYVPKSVFKQIGFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTDAGFHLQQSPFYVLLGAVSLETISVQGCPQ 306
            SGFLSPAALEVDLSGCSYVPKSVFKQ+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VTDAGFHLQQSPFYVLLGAVSLETISVQGCPQ
Sbjct:   77 SGFLSPAALEVDLSGCSYVPKSVFKQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVTDAGFHLQQSPFYVLLGAVSLETISVQGCPQ 178
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BLAST of mRNA_L-elsbetiae_contig1744.4899.1 vs. uniprot
Match: A0A835Z4K5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4K5_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.080e-6
Identity = 64/99 (64.65%), Postives = 76/99 (76.77%), Query Frame = 1 
Query:   10 LSPAALEVDLSGCSYVPKSVFKQIGFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTDAGFHLQQSPFYVLLGAVSLETISVQGCPQ 306
            LS AA  +DL+G   V  SV + IG++        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +D+GF+ +QSPF +L+G VSLET+SV GCPQ
Sbjct:   10 LSSAAYALDLTGACNVRNSVLRSIGYTCSKLTYLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDSGFNQKQSPFQLLVGCVSLETLSVSGCPQ 108
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1744.4899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUK7_ECTSI8.970e-2495.10Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A835Z4K5_9STRA8.080e-664.65Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1744contigL-elsbetiae_contig1744:22306..24002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue3.3e-20
Seed eggNOG ortholog2880.D7FUK7
Preferred nameLRRC29
KEGG koko:K10268,ko:K10275
Hectar predicted targeting categoryother localisation
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG4341@1,KOG4341@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-02_002880.1
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.783469-CDS-L-elsbetiae_contig1744:22305..224791622815726.783469-CDS-L-elsbetiae_contig1744:22305..22479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1744 22306..22479 -
1691683063.0484133-CDS-L-elsbetiae_contig1744:22305..224791691683063.0484133-CDS-L-elsbetiae_contig1744:22305..22479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1744 22306..22479 -
1622815726.8041713-CDS-L-elsbetiae_contig1744:23870..240021622815726.8041713-CDS-L-elsbetiae_contig1744:23870..24002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1744 23871..24002 -
1691683063.061641-CDS-L-elsbetiae_contig1744:23870..240021691683063.061641-CDS-L-elsbetiae_contig1744:23870..24002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1744 23871..24002 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1744.4899.1prot_L-elsbetiae_contig1744.4899.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1744 22306..24002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1744.4899.1

>prot_L-elsbetiae_contig1744.4899.1 ID=prot_L-elsbetiae_contig1744.4899.1|Name=mRNA_L-elsbetiae_contig1744.4899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
SGFLSPAALEVDLSGCSYVPKSVFKQIGFSCPRIVHLNLSMCSQVNNAIV
RSVLQGCPSLRQLYLDGCRHVTDAGFHLQQSPFYVLLGAVSLETISVQGC
PQ
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mRNA from alignment at L-elsbetiae_contig1744:22306..24002-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1744.4899.1 ID=mRNA_L-elsbetiae_contig1744.4899.1|Name=mRNA_L-elsbetiae_contig1744.4899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1697bp|location=Sequence derived from alignment at L-elsbetiae_contig1744:22306..24002- (Laminarionema elsbetiae ELsaHSoW15)
TCAGGTTTCTTGAGCCCCGCGGCCCTGGAGGTGGATCTCTCCGGCTGCTC
GTACGTCCCGAAGAGCGTTTTCAAGCAGATCGGCTTCAGCTGCCCCAGAA
TCGTCCACCTCAACCTCAGCATGTGCTCGCAGGTGCGGTGTACACAGACG
ACGAATAAGCCAATATTGGGAGAGAAAAGAAAAAAAAAACATTATGTACA
ACAGGACCAGGCGTCCTGAGGGAGCAGCAGAAGAAGAAAGTAAGAACGAA
ACTGACTATTTACTATTTACAAGGTTTCACACAAGGGAAAGGATCCCTTC
TGTGTGACCACGGTTCAGTGCTCTGGCAAGATTTCCTCGTGACAGGGAGC
CCATCGAGCACTGGAAATAAATGTGAAGAAGAAAAAAATGACAAAAAAAA
AAAAAGACACACACACTACCTATTTACAACTGTGCCATTGTTGGTACATA
CATGTTATGTGTTGTACACAGCTCTGGGGGCACGGGGGGGTCTACGACAG
CAGTCAGTCCGCCTTGGAATCACTTTTTTTCTTTTTTTTGAACAGCCTGG
CGGGAAACAAGAGAGGTAACTGGTACATAGCTCGCATGTCGTGCAACCTA
TCTGTTGATCTGTAAGAAGAGGTATGGTAGCTGACACGATATACCTGGTA
CAATGTGTCTGTTCGTATCGAGGAAAAGGTATAATAGCTGACGTGCATTA
AATTATGACATACAATATACACTCCGGAGTATCTGCTAACATAGAAGAAA
AGTTCTTGGTAGCTGACATGGTACCTACACCACATATCTGTTAATTCTAA
AAAGAGGTATTCGGTAGCTGACATGACACATCTACAGCTACTCCGGAGTA
TCTGTTAATACATACTTCTTACTGCTACTTCTATAAAACTAATCCAAAGT
CGCTCGGATCACTCTCGTCCAAGTATTGGTCAATTCTTGTGTGTGTGTAT
ACTTGCAGAAAAACGAAGGTTGCAAAATACGCGCGGCTTTTTAGGACAGA
CCGAAGATGAAAGACGCCATTGTGGGGGGCGCGTGCAGGAAAATATACAA
GTACCATTTTCACATGCTGGGCGCGTATTATTCTACCCAAGACACTCTTC
TAGACGGCTGGCGTTTAGTAGCCAAAATTATAATGAACATAAGTGCAACA
TTTGTGCCCACGGGCCGGTATGCTTGGGATACAGACAGCTAATGCGAAAA
ACAGCAACACAACATAGAGAACAACACTTCGCATTAAAACACGCAGTCCC
CCTGGAACACGACGTTTTGACAGGTTGGACGTGGTGTAACACCGCTGACG
TTTGTGAACGGACATTTGTTAACATAATAGGCTTTCTGCAATAGAGCCAG
CCCCCAATTCTCAAAAAACGGCGGGGGGGGGTAGGTATTATCTAGGAAAT
AAAAGAGTGACCCCCCCCCCTCCAGCTCTTTTCGATAATTTGGGACTCTG
TTGCAGGAAGCCTAGACATATATGACACGCACGACCCCGTCGCGTGAAAA
ACTAACCGAACCCCCACGAACAGGTGAACAACGCCATCGTGAGGAGCGTG
CTGCAGGGATGCCCCTCCCTACGCCAGCTCTACCTCGACGGCTGCCGGCA
CGTGACGGATGCGGGGTTCCACCTCCAGCAGTCCCCGTTCTACGTTCTCC
TGGGGGCGGTGTCCCTCGAGACCATCAGCGTCCAGGGCTGCCCGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1744:22306..24002-

>mRNA_L-elsbetiae_contig1744.4899.1 ID=mRNA_L-elsbetiae_contig1744.4899.1|Name=mRNA_L-elsbetiae_contig1744.4899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig1744:22306..24002- (Laminarionema elsbetiae ELsaHSoW15)
TCAGGTTTCTTGAGCCCCGCGGCCCTGGAGGTGGATCTCTCCGGCTGCTC
GTACGTCCCGAAGAGCGTTTTCAAGCAGATCGGCTTCAGCTGCCCCAGAA
TCGTCCACCTCAACCTCAGCATGTGCTCGCAGTCAGGTTTCTTGAGCCCC
GCGGCCCTGGAGGTGGATCTCTCCGGCTGCTCGTACGTCCCGAAGAGCGT
TTTCAAGCAGATCGGCTTCAGCTGCCCCAGAATCGTCCACCTCAACCTCA
GCATGTGCTCGCAGGTGAACAACGCCATCGTGAGGAGCGTGCTGCAGGGA
TGCCCCTCCCTACGCCAGCTCTACCTCGACGGCTGCCGGCACGTGACGGA
TGCGGGGTTCCACCTCCAGCAGTCCCCGTTCTACGTTCTCCTGGGGGCGG
TGTCCCTCGAGACCATCAGCGTCCAGGGCTGCCCGCAGGTGAACAACGCC
ATCGTGAGGAGCGTGCTGCAGGGATGCCCCTCCCTACGCCAGCTCTACCT
CGACGGCTGCCGGCACGTGACGGATGCGGGGTTCCACCTCCAGCAGTCCC
CGTTCTACGTTCTCCTGGGGGCGGTGTCCCTCGAGACCATCAGCGTCCAG
GGCTGCCCGCAG
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