prot_L-elsbetiae_contig1744.4899.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1744.4899.1
Unique Nameprot_L-elsbetiae_contig1744.4899.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length102
Homology
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BLAST of mRNA_L-elsbetiae_contig1744.4899.1 vs. uniprot
Match: D7FUK7_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUK7_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 8.970e-24
Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 0 
Query:    1 SGFLSPAALEVDLSGCSYVPKSVFKQIGFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTDAGFHLQQSPFYVLLGAVSLETISVQGCPQ 102
            SGFLSPAALEVDLSGCSYVPKSVFKQ+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VTDAGFHLQQSPFYVLLGAVSLETISVQGCPQ
Sbjct:   77 SGFLSPAALEVDLSGCSYVPKSVFKQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVTDAGFHLQQSPFYVLLGAVSLETISVQGCPQ 178
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BLAST of mRNA_L-elsbetiae_contig1744.4899.1 vs. uniprot
Match: A0A835Z4K5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4K5_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.080e-6
Identity = 64/99 (64.65%), Postives = 76/99 (76.77%), Query Frame = 0 
Query:    4 LSPAALEVDLSGCSYVPKSVFKQIGFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTDAGFHLQQSPFYVLLGAVSLETISVQGCPQ 102
            LS AA  +DL+G   V  SV + IG++        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +D+GF+ +QSPF +L+G VSLET+SV GCPQ
Sbjct:   10 LSSAAYALDLTGACNVRNSVLRSIGYTCSKLTYLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDSGFNQKQSPFQLLVGCVSLETLSVSGCPQ 108
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1744.4899.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUK7_ECTSI8.970e-2495.10Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A835Z4K5_9STRA8.080e-664.65Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 31..56
e-value: 14.0
score: 13.4
coord: 57..81
e-value: 6.1
score: 15.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 6..102
e-value: 4.7E-16
score: 60.6
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 5..100
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 11..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1744contigL-elsbetiae_contig1744:22306..24002 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1744.4899.1mRNA_L-elsbetiae_contig1744.4899.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1744 22306..24002 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1744.4899.1 ID=prot_L-elsbetiae_contig1744.4899.1|Name=mRNA_L-elsbetiae_contig1744.4899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
SGFLSPAALEVDLSGCSYVPKSVFKQIGFSCPRIVHLNLSMCSQVNNAIV
RSVLQGCPSLRQLYLDGCRHVTDAGFHLQQSPFYVLLGAVSLETISVQGC
PQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf