mRNA_L-elsbetiae_contig1742.4891.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1742.4891.1
Unique NamemRNA_L-elsbetiae_contig1742.4891.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1742.4891.1 vs. uniprot
Match: D7G4Q4_ECTSI (Mtg2, mitochondrial Obg/CtgA-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q4_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.640e-15
Identity = 55/95 (57.89%), Postives = 64/95 (67.37%), Query Frame = 2 
Query:   38 SRCLTRRPLGLSRPSTFRVANANCN-GIG-VQVLNRGAGGVPGKRRKYRGDFKFVDKLRIVASGGKGGDGCISLEGEHIEMCAPDRDRDPPSGCS 316
            SRC   R LG+ R       +  C+ G+  V VLNR AGG PGKRR +RGD+KFVDKLRI+ASGGKGGDGCISLEG++     P R R  PSG S
Sbjct:    7 SRC---RVLGVLRVCHLGFGSPGCHAGVSSVLVLNRQAGGRPGKRRNHRGDYKFVDKLRILASGGKGGDGCISLEGDN-----PTRKR--PSGGS 91
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1742.4891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4Q4_ECTSI1.640e-1557.89Mtg2, mitochondrial Obg/CtgA-like GTPase n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1742contigL-elsbetiae_contig1742:22804..23915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.8e-15
Seed eggNOG ortholog2880.D7G4Q4
Preferred nameMTG2
KEGG koko:K03979,ko:K10277,ko:K15334
Hectar predicted targeting categorymitochondrion
GOsGO:0000166,GO:0000313,GO:0001882,GO:0001883,GO:0002181,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005840,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0019866,GO:0019898,GO:0031090,GO:0031312,GO:0031314,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032268,GO:0032543,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043576,GO:0043603,GO:0043604,GO:0044057,GO:0044065,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051239,GO:0051246,GO:0060255,GO:0065007,GO:0070013,GO:0070129,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:0098798,GO:0140053,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
EggNOG free text desc.GTP-binding protein
EggNOG OGsCOG0536@1,KOG1489@2759
EC1.14.11.27,2.1.1.202
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03016,ko03036
Exons2
Model size850
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1742.4891.1prot_L-elsbetiae_contig1742.4891.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1742 22832..23384 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.0454676-UTR-L-elsbetiae_contig1742:22803..228311622815726.0454676-UTR-L-elsbetiae_contig1742:22803..22831Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1742 22804..22831 +
1691683062.5112162-UTR-L-elsbetiae_contig1742:22803..228311691683062.5112162-UTR-L-elsbetiae_contig1742:22803..22831Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1742 22804..22831 +
1622815726.0805295-UTR-L-elsbetiae_contig1742:23384..239151622815726.0805295-UTR-L-elsbetiae_contig1742:23384..23915Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1742 23385..23915 +
1691683062.5504177-UTR-L-elsbetiae_contig1742:23384..239151691683062.5504177-UTR-L-elsbetiae_contig1742:23384..23915Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1742 23385..23915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.0574758-CDS-L-elsbetiae_contig1742:22831..229931622815726.0574758-CDS-L-elsbetiae_contig1742:22831..22993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1742 22832..22993 +
1691683062.5284204-CDS-L-elsbetiae_contig1742:22831..229931691683062.5284204-CDS-L-elsbetiae_contig1742:22831..22993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1742 22832..22993 +
1622815726.069883-CDS-L-elsbetiae_contig1742:23255..233841622815726.069883-CDS-L-elsbetiae_contig1742:23255..23384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1742 23256..23384 +
1691683062.5408192-CDS-L-elsbetiae_contig1742:23255..233841691683062.5408192-CDS-L-elsbetiae_contig1742:23255..23384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1742 23256..23384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1742.4891.1

>prot_L-elsbetiae_contig1742.4891.1 ID=prot_L-elsbetiae_contig1742.4891.1|Name=mRNA_L-elsbetiae_contig1742.4891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
MLLSRCLTRRPLGLSRPSTFRVANANCNGIGVQVLNRGAGGVPGKRRKYR
GDFKFVDKLRIVASGGKGGDGCISLEGEHIEMCAPDRDRDPPSGCS*
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mRNA from alignment at L-elsbetiae_contig1742:22804..23915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1742.4891.1 ID=mRNA_L-elsbetiae_contig1742.4891.1|Name=mRNA_L-elsbetiae_contig1742.4891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1112bp|location=Sequence derived from alignment at L-elsbetiae_contig1742:22804..23915+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGCTGCGCTCGTGCTTGCGCTGTGCTATGTTGCTGTCTCGCTGCTTAA
CTCGTCGACCACTCGGATTATCGCGGCCATCTACCTTTCGCGTTGCCAAT
GCGAATTGTAATGGCATTGGTGTCCAGGTGTTGAATCGAGGAGCGGGAGG
AGTGCCCGGAAAGCGTAGGAAATACAGGGGCGACTTCAAGGCAAGCGAAG
CAGTCACCCAAGCTGCAAACCTGTTTTCGCTCTCTACAGCTTGTGCGATT
CGTGATTATTTACGGCGTGGTCGCACCATTGCCTTGCTCTCAGAATGGAC
GGATACGCTCCACTGGATGGCAAAGGAGATAGGAGATAGGTGAAAGGTTC
AAACTGCGGTGGATGCAGAGTTCCTGTCGCGGAGAAGAGCCAGCCCCTCA
CGATATTGTATATGTCTCTCGTTTCCGCTGTTTGTCACCCATTTATTTCC
AGTTCGTCGACAAACTTCGCATCGTGGCTAGTGGGGGCAAGGGAGGGGAC
GGATGCATCAGCCTTGAGGGTGAGCACATCGAAATGTGTGCACCAGACCG
AGATCGAGACCCACCCAGTGGTTGCAGCTGAAGCCCTTTCCCTTCATCCA
CATGCACAGACTTTTGGCGTCACAGCAGTAGTTTAGTCTAGAGGGCGGCC
GCATGTATTTATGTGAACAACAAAAGTAGGAGTTCAGTCGTGCCATATTA
GGTTCGCACATGTCTACAGCAGTAAGGGGCATCTACGTGTACTAGGAGTA
TTATTACGTTGTTACGACGAAAGCGACAGCAGTGGGGATGGGGTTACCAT
CACCCAGTACGGGGGCGAGAGATTGTGCCGCTGCACACGCCGCCCACCGC
TTCTTACCGAACAAGGCGCGAGCATCATCAGTCAGCGGCATAACCACGAG
TATTGTCCGACAACGCACAACTCACCACCGAGCTCCTGCACACTTAAGGT
AGGCCACGATCAGTGGCCGGTAGCGTCCCCTGCTTTACTCTACAACCTGG
ATTAAAATTTTTATCTTGATTATTAACACAGCAAGTTGTCGAAATGCTCG
ATAATTTTCAAAAAATGGCGCGCCATCTCCTTGGCCTCTAGGTTAAGAGA
TATGTCGAAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1742:22804..23915+

>mRNA_L-elsbetiae_contig1742.4891.1 ID=mRNA_L-elsbetiae_contig1742.4891.1|Name=mRNA_L-elsbetiae_contig1742.4891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig1742:22804..23915+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCTGTCTCGCTGCTTAACTCGTCGACCACTCGGATTATCGCGGCC
ATCTACCTTTCGCGTTGCCAATGCGAATTGTAATGGCATTGGTGTCCAGG
TGTTGAATCGAGGAGCGGGAGGAGTGCCCGGAAAGCGTAGGAAATACAGG
GGCGACTTCAAGATGTTGCTGTCTCGCTGCTTAACTCGTCGACCACTCGG
ATTATCGCGGCCATCTACCTTTCGCGTTGCCAATGCGAATTGTAATGGCA
TTGGTGTCCAGGTGTTGAATCGAGGAGCGGGAGGAGTGCCCGGAAAGCGT
AGGAAATACAGGGGCGACTTCAAGTTCGTCGACAAACTTCGCATCGTGGC
TAGTGGGGGCAAGGGAGGGGACGGATGCATCAGCCTTGAGGGTGAGCACA
TCGAAATGTGTGCACCAGACCGAGATCGAGACCCACCCAGTGGTTGCAGC
TGATTCGTCGACAAACTTCGCATCGTGGCTAGTGGGGGCAAGGGAGGGGA
CGGATGCATCAGCCTTGAGGGTGAGCACATCGAAATGTGTGCACCAGACC
GAGATCGAGACCCACCCAGTGGTTGCAGCTGA
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