mRNA_L-elsbetiae_contig1739.4873.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 369 bits (948), Expect = 3.430e-123 Identity = 187/218 (85.78%), Postives = 202/218 (92.66%), Query Frame = 1 Query: 154 STQMFLGTTATLIASSAAFIAPMAVRSAAPASWSS-LEMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 804 S+ MFLGT ATLIASS AF+APMAVRSAAPAS +S L+MSAGSDYVATLPGAPF DGKIFDPL LSDGAEPGEIKLWREAEIKHGRVAMLA++GV+VAE+YHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTITKAYA+PS VTGEGGL+++YSPGDLGFDPL +KPK A L MQTKELNNGRLAMIGIAGMLVQEL+NPADILG Sbjct: 4 SSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 360 bits (923), Expect = 1.980e-119 Identity = 185/218 (84.86%), Postives = 197/218 (90.37%), Query Frame = 1 Query: 154 STQMFLGTTATLIASSAAFIAPMAVRSAAPASWSS-LEMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 804 +TQ+FLG+ ATLIASS AF+APMAVRSAAPAS SS L+MSAGSDYVATLPGAPF DGKIFDPL LSDGA+P +IK WREAEIKHGRVAMLASLGVLVAE+YHP FMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTI A+ PS VTGEGGLKEDY PGDLGFDPL +KP+ A L M+TKELNNGRLAMIGIAGMLVQELINPADILG Sbjct: 3 ATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 337 bits (865), Expect = 1.280e-110 Identity = 175/220 (79.55%), Postives = 190/220 (86.36%), Query Frame = 1 Query: 154 STQMFLGTTATLIASSAAFIAPMAVRSAAPASWSS-LEMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG*F 810 ++QMFLGT A LIASS AF+AP+AVRSAAPAS +S L+MSAGSDYVATLPGAPFSDGKIFDPL LSDGA PG+IK WREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISAQ+PEFW FSLLGMAFIEYNTI A+ PS VTGEGGLKEDY PGDLGFDPL +KP A L M+TKELNNGRLAMIGIAGML QEL+N DIL F Sbjct: 3 ASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNF 222
BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI) HSP 1 Score: 333 bits (853), Expect = 6.700e-109 Identity = 171/221 (77.38%), Postives = 195/221 (88.24%), Query Frame = 1 Query: 145 LGTSTQMFLGTTATLIASSAAFIAPMAVRSAAPASWSS-LEMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 804 + S+ MFLGT ATLIASSAAF+ PMAVRSAAPAS +S L+MSAG+DY+ATLPGA +GKIFD L L+DGA+PGEIKLWREAEIKHGRVAMLA++GV+VAE+YHPFFMGPDYIGPAVDHFQEI+A++P+FW +SLLGMAFIEYNTI KAYA+PS VTGEGGL+++YSPGDLGFDP IKPK A L MQ KELNNGRLAMIGI GMLVQEL+N DILG Sbjct: 1 MAASSNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI) HSP 1 Score: 280 bits (717), Expect = 8.790e-89 Identity = 134/161 (83.23%), Postives = 144/161 (89.44%), Query Frame = 1 Query: 322 KIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 804 +IFDPLGLSDGA PG+IK WREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAF+EYNTI A+ PS VTGEGGLKEDY PGDLGFDPL +KP A L M+TKELNNGRLAMIGIAGML QEL+NPADILG Sbjct: 36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI) HSP 1 Score: 280 bits (715), Expect = 9.460e-89 Identity = 134/160 (83.75%), Postives = 146/160 (91.25%), Query Frame = 1 Query: 322 KIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 801 KIFDPLGL+DGAE G+IKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISA++PEFW FSLL +A IEYNTITKAYA+PS VTGEGGL+++YSPGDLGFDPL +KP L TMQTKELNNGRLAMIGIAG LVQEL+NP +IL Sbjct: 15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE) HSP 1 Score: 276 bits (707), Expect = 2.420e-87 Identity = 152/218 (69.72%), Postives = 163/218 (74.77%), Query Frame = 1 Query: 154 STQMFLGTTATLIASSAAFIAPMAVRSAAPASWS-SLEMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 804 ++QMF+GT ATLIASS AF+APMAVRS S L+MSAGSDYVATLPGAPFSDGKIFDPLGLSDGA PG+IK WREAEIKHGRVAMLASLGV+VAE FW FSLLGMAFIEYNTI A+ PS VTGEGGLKEDY PGDLGFDPL +KP A L M+TKELNNGRLAMIGIAGML QEL+NPADILG Sbjct: 3 ASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 281 bits (719), Expect = 2.610e-86 Identity = 181/391 (46.29%), Postives = 195/391 (49.87%), Query Frame = 1 Query: 154 STQMFLGTTATLIASSAAFIAPMAVRSAA---PASWSSLEMSAGSDYVATLPGAPFSDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 804 ++QMF+GT ATLIASS AF+AP+AVRS A P+S SSL MSAGSDYVATLPGAPFSDGK IFDPLGLSDGA PG+IK WREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTI A+ PS VTGEGGLKEDY PGDLGFDPL +KP A L M+TKELNNGRLAMIGIAGML QEL+NPADILG Sbjct: 3 ASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSS-SSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI) HSP 1 Score: 263 bits (671), Expect = 8.260e-81 Identity = 129/218 (59.17%), Postives = 166/218 (76.15%), Query Frame = 1 Query: 151 TSTQMFLGTTATLIASSAAFIAPMAVRSAAPASWSSLEMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 804 TST +G + AS AFI P +A + ++ MSAGSDYV+TLPGAPF+DGK++DP+GLS A+P +IK WREAEIKHGRVAMLAS+GVLVAE +HP F+GPDYIGPA+ HF+EI+A++P+FW +LL +A++EY I +A+ VTGEGG++ DY PGDLGFDPLG+ P+ +L M+TKELN+GRLAMIGI GM+VQEL+ P I G Sbjct: 54 TSTGALVGMASWCFASCEAFIVPTPTTLSARPTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI) HSP 1 Score: 238 bits (608), Expect = 5.420e-72 Identity = 129/222 (58.11%), Postives = 166/222 (74.77%), Query Frame = 1 Query: 154 STQMFLGTTATLIASSAAFIAPMAV-RS--AAPASWSSLEMSAGSDYVATLPGAPF---SDGKIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 801 ++Q+FLGT ATLIASSAAF+AP+A RS A A+ S+ +M+AGSDY A+LPGAPF ++GK FDP GL+ +P IK WREAE+KHGRV+MLA++G+LV+E +HP FMGP YIGPAV+H Q+I+ YP FWV SL +AFIE TI A+ S VTG G LK +Y PGDLGFDPLG+ PK D +Q++EL+ GR AMIG+ GM+VQE+++ IL Sbjct: 3 TSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1739.4873.1 >prot_L-elsbetiae_contig1739.4873.1 ID=prot_L-elsbetiae_contig1739.4873.1|Name=mRNA_L-elsbetiae_contig1739.4873.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=223bp MNLGTSTQMFLGTTATLIASSAAFIAPMAVRSAAPASWSSLEMSAGSDYVback to top mRNA from alignment at L-elsbetiae_contig1739:19523..23009- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1739.4873.1 ID=mRNA_L-elsbetiae_contig1739.4873.1|Name=mRNA_L-elsbetiae_contig1739.4873.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3487bp|location=Sequence derived from alignment at L-elsbetiae_contig1739:19523..23009- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1739:19523..23009- >mRNA_L-elsbetiae_contig1739.4873.1 ID=mRNA_L-elsbetiae_contig1739.4873.1|Name=mRNA_L-elsbetiae_contig1739.4873.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1338bp|location=Sequence derived from alignment at L-elsbetiae_contig1739:19523..23009- (Laminarionema elsbetiae ELsaHSoW15)back to top |