prot_L-elsbetiae_contig1739.4873.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1739.4873.1
Unique Name	prot_L-elsbetiae_contig1739.4873.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	223

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 369 bits (948), Expect = 3.570e-128
Identity = 187/218 (85.78%), Postives = 202/218 (92.66%), Query Frame = 0

Query:    6 STQMFLGTTATLIASSAAFIAPMAVRSAAPASWSS-LEMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 222
            S+ MFLGT ATLIASS AF+APMAVRSAAPAS +S L+MSAGSDYVATLPGAPF DGKIFDPL LSDGAEPGEIKLWREAEIKHGRVAMLA++GV+VAE+YHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTITKAYA+PS VTGEGGL+++YSPGDLGFDPL +KPK  A L  MQTKELNNGRLAMIGIAGMLVQEL+NPADILG
Sbjct:    4 SSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221

[Close]

BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 360 bits (923), Expect = 2.220e-124
Identity = 185/217 (85.25%), Postives = 196/217 (90.32%), Query Frame = 0

Query:    7 TQMFLGTTATLIASSAAFIAPMAVRSAAPASWSS-LEMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 222
            TQ+FLG+ ATLIASS AF+APMAVRSAAPAS SS L+MSAGSDYVATLPGAPF DGKIFDPL LSDGA+P +IK WREAEIKHGRVAMLASLGVLVAE+YHP FMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTI  A+  PS VTGEGGLKEDY PGDLGFDPL +KP+  A L  M+TKELNNGRLAMIGIAGMLVQELINPADILG
Sbjct:    4 TQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220

[Close]

BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 2.470e-115
Identity = 174/215 (80.93%), Postives = 187/215 (86.98%), Query Frame = 0

Query:    8 QMFLGTTATLIASSAAFIAPMAVRSAAPASWSS-LEMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 221
            QMFLGT A LIASS AF+AP+AVRSAAPAS +S L+MSAGSDYVATLPGAPFSDGKIFDPL LSDGA PG+IK WREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISAQ+PEFW FSLLGMAFIEYNTI  A+  PS VTGEGGLKEDY PGDLGFDPL +KP   A L  M+TKELNNGRLAMIGIAGML QEL+N  DIL
Sbjct:    5 QMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219

[Close]

BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 9.490e-114
Identity = 171/221 (77.38%), Postives = 195/221 (88.24%), Query Frame = 0

Query:    3 LGTSTQMFLGTTATLIASSAAFIAPMAVRSAAPASWSS-LEMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 222
            +  S+ MFLGT ATLIASSAAF+ PMAVRSAAPAS +S L+MSAG+DY+ATLPGA   +GKIFD L L+DGA+PGEIKLWREAEIKHGRVAMLA++GV+VAE+YHPFFMGPDYIGPAVDHFQEI+A++P+FW +SLLGMAFIEYNTI KAYA+PS VTGEGGL+++YSPGDLGFDP  IKPK  A L  MQ KELNNGRLAMIGI GMLVQEL+N  DILG
Sbjct:    1 MAASSNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218

[Close]

BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 1.570e-93
Identity = 134/161 (83.23%), Postives = 144/161 (89.44%), Query Frame = 0

Query:   62 KIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 222
            +IFDPLGLSDGA PG+IK WREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAF+EYNTI  A+  PS VTGEGGLKEDY PGDLGFDPL +KP   A L  M+TKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196

[Close]

BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 280 bits (716), Expect = 1.710e-93
Identity = 134/160 (83.75%), Postives = 146/160 (91.25%), Query Frame = 0

Query:   62 KIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 221
            KIFDPLGL+DGAE G+IKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISA++PEFW FSLL +A IEYNTITKAYA+PS VTGEGGL+++YSPGDLGFDPL +KP     L TMQTKELNNGRLAMIGIAG LVQEL+NP +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174

[Close]

BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 6.450e-92
Identity = 152/216 (70.37%), Postives = 161/216 (74.54%), Query Frame = 0

Query:    8 QMFLGTTATLIASSAAFIAPMAVRSAAPASWS-SLEMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 222
            QMF+GT ATLIASS AF+APMAVRS      S  L+MSAGSDYVATLPGAPFSDGKIFDPLGLSDGA PG+IK WREAEIKHGRVAMLASLGV+VAE                            FW FSLLGMAFIEYNTI  A+  PS VTGEGGLKEDY PGDLGFDPL +KP   A L  M+TKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:    5 QMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192

[Close]

BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 4.620e-91
Identity = 135/161 (83.85%), Postives = 144/161 (89.44%), Query Frame = 0

Query:   62 KIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 222
            +IFDPLGLSDGA PG+IK WREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTI  A+  PS VTGEGGLKEDY PGDLGFDPL +KP   A L  M+TKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392

[Close]

BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 2.690e-85
Identity = 129/218 (59.17%), Postives = 166/218 (76.15%), Query Frame = 0

Query:    5 TSTQMFLGTTATLIASSAAFIAPMAVRSAAPASWSSLEMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 222
            TST   +G  +   AS  AFI P     +A  + ++  MSAGSDYV+TLPGAPF+DGK++DP+GLS  A+P +IK WREAEIKHGRVAMLAS+GVLVAE +HP F+GPDYIGPA+ HF+EI+A++P+FW  +LL +A++EY  I   +A+   VTGEGG++ DY PGDLGFDPLG+ P+   +L  M+TKELN+GRLAMIGI GM+VQEL+ P  I G
Sbjct:   54 TSTGALVGMASWCFASCEAFIVPTPTTLSARPTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271

[Close]

BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 2.630e-76
Identity = 129/220 (58.64%), Postives = 164/220 (74.55%), Query Frame = 0

Query:    8 QMFLGTTATLIASSAAFIAPMAV-RS--AAPASWSSLEMSAGSDYVATLPGAPF---SDGKIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 221
            Q+FLGT ATLIASSAAF+AP+A  RS  A  A+ S+ +M+AGSDY A+LPGAPF   ++GK FDP GL+   +P  IK WREAE+KHGRV+MLA++G+LV+E +HP FMGP YIGPAV+H Q+I+  YP FWV SL  +AFIE  TI  A+   S VTG G LK +Y PGDLGFDPLG+ PK   D   +Q++EL+ GR AMIG+ GM+VQE+++   IL
Sbjct:    5 QLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1739.4873.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7S1_ECTSI	3.570e-128	85.78	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q6_ECTSI	2.220e-124	85.25	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	2.470e-115	80.93	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	9.490e-114	77.38	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S5_ECTSI	1.570e-93	83.23	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q7_ECTSI	1.710e-93	83.75	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5K8D0_9PHAE	6.450e-92	70.37	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
A0A6H5JWB4_9PHAE	4.620e-91	83.85	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G5B4_ECTSI	2.690e-85	59.17	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7FQG7_ECTSI	2.630e-76	58.64	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 53..213 e-value: 4.5E-37 score: 128.1
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 40..221 e-value: 7.5E-35 score: 122.3
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 13..216
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..33
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 10..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..9
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 26..33
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 34..222
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 60..221
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 13..216

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1739	contig	L-elsbetiae_contig1739:20344..22871 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1739.4873.1	mRNA_L-elsbetiae_contig1739.4873.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1739 19523..23009 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1739.4873.1 ID=prot_L-elsbetiae_contig1739.4873.1|Name=mRNA_L-elsbetiae_contig1739.4873.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=223bp
MNLGTSTQMFLGTTATLIASSAAFIAPMAVRSAAPASWSSLEMSAGSDYV
ATLPGAPFSDGKIFDPLGLSDGAEPGEIKLWREAEIKHGRVAMLASLGVL
VAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITK
AYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTAADLVTMQTKELNNGR
LAMIGIAGMLVQELINPADILG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln