mRNA_L-elsbetiae_contig1733.4848.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1733.4848.1
Unique NamemRNA_L-elsbetiae_contig1733.4848.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1733.4848.1 vs. uniprot
Match: A0A6H5KT20_9PHAE (FtsJ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT20_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.850e-32
Identity = 118/250 (47.20%), Postives = 131/250 (52.40%), Query Frame = 1 
Query:    4 VVAVDLLELEADLPGVEAIRGDFRDAGVESKIFAGLAPRELGPPASENSRQQXXXXXXXXXXISPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGEAAARSRGEEAFLLRGTSASASLLPRPEQPKTDCLGELFPAAKPPAAGTATATIAQEEADRASPLSGRCGRNHRGGLVPDEDRESVGPVLSPAXXXXXXXXXXXXXXTRRRATVVLSDMAPSFSGDRDMDQARVAGLVLDALAACLGDEASR 753
            VVAVDLL++EADLPGV+AIRGDFRDA VES+IF+ L+ RE   PA  N R +          + P                                G A+     E+AFLLRGTSAS +LLPRPEQP TD L  LF A                  D A+                              XXXXXXXXXXXXXXTR  A+VVLSDMAPSFSGDRD DQ RVA LVLDALAACLGDEASR
Sbjct:  146 VVAVDLLDMEADLPGVQAIRGDFRDAEVESRIFSLLSARERLQPAPGNERPKLDEQRVLP--LQPPEVTAAESGKERADLRRDDTKLRSSDGYGVDDGSASDGVGEEDAFLLRGTSASRTLLPRPEQPSTDSLEHLFLAGG-------------GNRDPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTR--ASVVLSDMAPSFSGDRDTDQGRVAALVLDALAACLGDEASR 378
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1733.4848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KT20_9PHAE1.850e-3247.20FtsJ domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1733contigL-elsbetiae_contig1733:12540..13915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size942
Cds size939
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.1868718-CDS-L-elsbetiae_contig1733:12539..125931622815722.1868718-CDS-L-elsbetiae_contig1733:12539..12593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1733 12540..12593 +
1691683059.8897421-CDS-L-elsbetiae_contig1733:12539..125931691683059.8897421-CDS-L-elsbetiae_contig1733:12539..12593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1733 12540..12593 +
1622815722.1972978-CDS-L-elsbetiae_contig1733:13029..139141622815722.1972978-CDS-L-elsbetiae_contig1733:13029..13914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1733 13030..13914 +
1691683059.8995566-CDS-L-elsbetiae_contig1733:13029..139141691683059.8995566-CDS-L-elsbetiae_contig1733:13029..13914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1733 13030..13914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1733.4848.1prot_L-elsbetiae_contig1733.4848.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1733 12540..13914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1733.4848.1

>prot_L-elsbetiae_contig1733.4848.1 ID=prot_L-elsbetiae_contig1733.4848.1|Name=mRNA_L-elsbetiae_contig1733.4848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=313bp
AVVAVDLLELEADLPGVEAIRGDFRDAGVESKIFAGLAPRELGPPASENS
RQQQPAAQQRPTAISPAKQTNSAAATETIAPQRNGGGNKKSDGDDGRGGE
AAARSRGEEAFLLRGTSASASLLPRPEQPKTDCLGELFPAAKPPAAGTAT
ATIAQEEADRASPLSGRCGRNHRGGLVPDEDRESVGPVLSPAPPPPTPRP
RPPPPPTRRRATVVLSDMAPSFSGDRDMDQARVAGLVLDALAACLGDEAS
RRREPPKSAAAAGTGSGGRPEDAAAWEGGGGRVGSRRAGGDTVRPGSSPV
EGVTASNTGETRG
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mRNA from alignment at L-elsbetiae_contig1733:12540..13915+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1733.4848.1 ID=mRNA_L-elsbetiae_contig1733.4848.1|Name=mRNA_L-elsbetiae_contig1733.4848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1376bp|location=Sequence derived from alignment at L-elsbetiae_contig1733:12540..13915+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGTGGTGGCAGTCGACTTGCTCGAGCTGGAGGCGGATTTGCCCGGGGT
AGAGGTAAGTCAGGGGTTGGCGTGGGATTCCACGGGGAAGCGTTTAGTTT
GATCTGCTTTTTTTTTCTATATTGGAAACCTCCGCTGCGTACGTAAAACA
AGGTGGCCGTTTTAGATGTGCCTTTCGTGTTTTCTCTTGCCAACTACTGC
TGTCTTGCCATCCCCAACACATTACCTGTCTCACTCAGGCAGTCATTCGG
ACAGGTTCTGTAGGCGCAAGGGTGCATAGAGTAGAGACATTTTTCAAGAG
TTCAAGAAGGATTGATTGCACCCAACGCCAGCGAACAGCCTGGATGGATG
TTGACAAGCAAGCTGCCTGGTTCAGTGAGAGCGCGTGGAACAAGAAGCGC
GCTGTAGGCGTCCACGCACTCCGTTGCCGCTCCACGGCGGGCACTGAGCA
ATCGCTACCTACATCTCTCTTGTGTGTTATCTGCTTTCAGGCAATTCGCG
GAGACTTTCGGGACGCGGGGGTAGAGTCGAAGATATTCGCGGGCTTAGCG
CCGAGGGAGCTAGGACCACCGGCATCGGAAAACAGCCGCCAGCAGCAACC
CGCGGCACAACAGCGGCCCACGGCGATATCGCCGGCGAAACAAACCAATT
CCGCCGCCGCCACGGAGACAATTGCGCCCCAGCGCAACGGCGGTGGGAAC
AAGAAGAGCGACGGGGACGACGGGCGCGGTGGCGAAGCCGCCGCCCGTTC
CCGCGGGGAGGAGGCGTTCCTTCTCCGGGGCACGTCGGCCTCGGCGTCGC
TCCTCCCACGGCCGGAGCAGCCCAAGACGGACTGCCTGGGCGAGCTCTTC
CCCGCCGCCAAGCCTCCAGCGGCGGGGACGGCGACGGCGACGATCGCCCA
GGAGGAAGCCGACCGGGCGTCGCCGCTTTCTGGGCGTTGTGGTCGTAATC
ACCGGGGCGGGCTCGTGCCGGACGAAGACCGCGAGTCAGTCGGCCCCGTC
TTGTCCCCTGCTCCTCCTCCCCCCACCCCGCGCCCGCGTCCTCCGCCGCC
GCCGACCCGCCGCCGCGCCACCGTCGTGCTGTCGGACATGGCGCCGTCGT
TCTCGGGCGACCGGGACATGGACCAAGCGCGCGTCGCCGGGCTGGTGCTG
GACGCCCTCGCGGCCTGCCTCGGCGACGAAGCTTCGAGACGAAGAGAGCC
GCCGAAAAGCGCCGCCGCGGCGGGGACGGGGAGCGGCGGCCGGCCAGAAG
ACGCGGCTGCGTGGGAAGGGGGCGGCGGTAGGGTCGGGAGCCGCCGAGCT
GGTGGGGACACGGTGAGGCCGGGATCATCGCCTGTCGAAGGGGTCACGGC
GTCCAATACCGGAGAAACGAGGGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1733:12540..13915+

>mRNA_L-elsbetiae_contig1733.4848.1 ID=mRNA_L-elsbetiae_contig1733.4848.1|Name=mRNA_L-elsbetiae_contig1733.4848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1878bp|location=Sequence derived from alignment at L-elsbetiae_contig1733:12540..13915+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGTGGTGGCAGTCGACTTGCTCGAGCTGGAGGCGGATTTGCCCGGGGT
AGAGGCGGTGGTGGCAGTCGACTTGCTCGAGCTGGAGGCGGATTTGCCCG
GGGTAGAGGCAATTCGCGGAGACTTTCGGGACGCGGGGGTAGAGTCGAAG
ATATTCGCGGGCTTAGCGCCGAGGGAGCTAGGACCACCGGCATCGGAAAA
CAGCCGCCAGCAGCAACCCGCGGCACAACAGCGGCCCACGGCGATATCGC
CGGCGAAACAAACCAATTCCGCCGCCGCCACGGAGACAATTGCGCCCCAG
CGCAACGGCGGTGGGAACAAGAAGAGCGACGGGGACGACGGGCGCGGTGG
CGAAGCCGCCGCCCGTTCCCGCGGGGAGGAGGCGTTCCTTCTCCGGGGCA
CGTCGGCCTCGGCGTCGCTCCTCCCACGGCCGGAGCAGCCCAAGACGGAC
TGCCTGGGCGAGCTCTTCCCCGCCGCCAAGCCTCCAGCGGCGGGGACGGC
GACGGCGACGATCGCCCAGGAGGAAGCCGACCGGGCGTCGCCGCTTTCTG
GGCGTTGTGGTCGTAATCACCGGGGCGGGCTCGTGCCGGACGAAGACCGC
GAGTCAGTCGGCCCCGTCTTGTCCCCTGCTCCTCCTCCCCCCACCCCGCG
CCCGCGTCCTCCGCCGCCGCCGACCCGCCGCCGCGCCACCGTCGTGCTGT
CGGACATGGCGCCGTCGTTCTCGGGCGACCGGGACATGGACCAAGCGCGC
GTCGCCGGGCTGGTGCTGGACGCCCTCGCGGCCTGCCTCGGCGACGAAGC
TTCGAGACGAAGAGAGCCGCCGAAAAGCGCCGCCGCGGCGGGGACGGGGA
GCGGCGGCCGGCCAGAAGACGCGGCTGCGTGGGAAGGGGGCGGCGGTAGG
GTCGGGAGCCGCCGAGCTGGTGGGGACACGGTGAGGCCGGGATCATCGCC
TGTCGAAGGGGTCACGGCGTCCAATACCGGAGAAACGAGGGGCGCAATTC
GCGGAGACTTTCGGGACGCGGGGGTAGAGTCGAAGATATTCGCGGGCTTA
GCGCCGAGGGAGCTAGGACCACCGGCATCGGAAAACAGCCGCCAGCAGCA
ACCCGCGGCACAACAGCGGCCCACGGCGATATCGCCGGCGAAACAAACCA
ATTCCGCCGCCGCCACGGAGACAATTGCGCCCCAGCGCAACGGCGGTGGG
AACAAGAAGAGCGACGGGGACGACGGGCGCGGTGGCGAAGCCGCCGCCCG
TTCCCGCGGGGAGGAGGCGTTCCTTCTCCGGGGCACGTCGGCCTCGGCGT
CGCTCCTCCCACGGCCGGAGCAGCCCAAGACGGACTGCCTGGGCGAGCTC
TTCCCCGCCGCCAAGCCTCCAGCGGCGGGGACGGCGACGGCGACGATCGC
CCAGGAGGAAGCCGACCGGGCGTCGCCGCTTTCTGGGCGTTGTGGTCGTA
ATCACCGGGGCGGGCTCGTGCCGGACGAAGACCGCGAGTCAGTCGGCCCC
GTCTTGTCCCCTGCTCCTCCTCCCCCCACCCCGCGCCCGCGTCCTCCGCC
GCCGCCGACCCGCCGCCGCGCCACCGTCGTGCTGTCGGACATGGCGCCGT
CGTTCTCGGGCGACCGGGACATGGACCAAGCGCGCGTCGCCGGGCTGGTG
CTGGACGCCCTCGCGGCCTGCCTCGGCGACGAAGCTTCGAGACGAAGAGA
GCCGCCGAAAAGCGCCGCCGCGGCGGGGACGGGGAGCGGCGGCCGGCCAG
AAGACGCGGCTGCGTGGGAAGGGGGCGGCGGTAGGGTCGGGAGCCGCCGA
GCTGGTGGGGACACGGTGAGGCCGGGATCATCGCCTGTCGAAGGGGTCAC
GGCGTCCAATACCGGAGAAACGAGGGGC
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