prot_L-elsbetiae_contig1733.4848.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1733.4848.1
Unique Nameprot_L-elsbetiae_contig1733.4848.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length313
Homology
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BLAST of mRNA_L-elsbetiae_contig1733.4848.1 vs. uniprot
Match: A0A6H5KT20_9PHAE (FtsJ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT20_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.850e-32
Identity = 118/250 (47.20%), Postives = 131/250 (52.40%), Query Frame = 0 
Query:    2 VVAVDLLELEADLPGVEAIRGDFRDAGVESKIFAGLAPRELGPPASENSRQQXXXXXXXXXXISPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGEAAARSRGEEAFLLRGTSASASLLPRPEQPKTDCLGELFPAAKPPAAGTATATIAQEEADRASPLSGRCGRNHRGGLVPDEDRESVGPVLSPAXXXXXXXXXXXXXXTRRRATVVLSDMAPSFSGDRDMDQARVAGLVLDALAACLGDEASR 251
            VVAVDLL++EADLPGV+AIRGDFRDA VES+IF+ L+ RE   PA  N R +          + P                                G A+     E+AFLLRGTSAS +LLPRPEQP TD L  LF A                  D A+                              XXXXXXXXXXXXXXTR  A+VVLSDMAPSFSGDRD DQ RVA LVLDALAACLGDEASR
Sbjct:  146 VVAVDLLDMEADLPGVQAIRGDFRDAEVESRIFSLLSARERLQPAPGNERPKLDEQRVLP--LQPPEVTAAESGKERADLRRDDTKLRSSDGYGVDDGSASDGVGEEDAFLLRGTSASRTLLPRPEQPSTDSLEHLFLAGG-------------GNRDPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTR--ASVVLSDMAPSFSGDRDTDQGRVAALVLDALAACLGDEASR 378
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1733.4848.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KT20_9PHAE1.850e-3247.20FtsJ domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002877Ribosomal RNA methyltransferase FtsJ domainPFAMPF01728FtsJcoord: 2..245
e-value: 1.1E-6
score: 28.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1733contigL-elsbetiae_contig1733:12540..13914 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1733.4848.1mRNA_L-elsbetiae_contig1733.4848.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1733 12540..13915 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1733.4848.1 ID=prot_L-elsbetiae_contig1733.4848.1|Name=mRNA_L-elsbetiae_contig1733.4848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=313bp
AVVAVDLLELEADLPGVEAIRGDFRDAGVESKIFAGLAPRELGPPASENS
RQQQPAAQQRPTAISPAKQTNSAAATETIAPQRNGGGNKKSDGDDGRGGE
AAARSRGEEAFLLRGTSASASLLPRPEQPKTDCLGELFPAAKPPAAGTAT
ATIAQEEADRASPLSGRCGRNHRGGLVPDEDRESVGPVLSPAPPPPTPRP
RPPPPPTRRRATVVLSDMAPSFSGDRDMDQARVAGLVLDALAACLGDEAS
RRREPPKSAAAAGTGSGGRPEDAAAWEGGGGRVGSRRAGGDTVRPGSSPV
EGVTASNTGETRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002877rRNA_MeTrfase_FtsJ_dom