mRNA_L-elsbetiae_contig17147.4764.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5JFZ2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFZ2_9PHAE) HSP 1 Score: 105 bits (261), Expect = 4.570e-23 Identity = 70/171 (40.94%), Postives = 92/171 (53.80%), Query Frame = -2 Query: 104 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGNCAE-----------EAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQAL------------------QAVRAEVEADAEAWRRGVKTDVLPTPELSPDLHIGLKPTDVEALPVSYKE-RCRKVQV 526 YDPAD RYP G EG++ W S+ GP RHGL+ GRTR QTR++ E EA L+ + E GG EIV +Y+CNSLV+++ EEQ QA AEV+A + LP P+LS IG KP+DVEA+P++YK+ C K +V Sbjct: 133 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTRKMQGAGEMXXXXXXXXXEEALLATILET-GGTEIVQDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASG-------SSQPLPDPQLSMTSPIGQKPSDVEAVPMTYKDGMCSKYKV 295
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5K0Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z3_9PHAE) HSP 1 Score: 105 bits (261), Expect = 5.380e-23 Identity = 70/160 (43.75%), Postives = 90/160 (56.25%), Query Frame = -2 Query: 125 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGN---------CAEEAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQA-LQAVRAEVEADAE------------AWRRGVKTDVLPTPELSPDLHI----GLKPTDVEALPVSYKE 526 YDP DSRYPSG EG++ W S G RH LQ GRTR QTREL + EEA LS V E E G EIVAEY+ SL+E+R+ +EQA + ++ +++ D A+ K D P P L P+L I G KP DVEA+P++YK+ Sbjct: 405 YDPVDSRYPSGTEGKKLLWGASCAGQLRHKLQTGRTRKQTRELRSSEQEPSVAPAPEEALLSTVLETENGPEIVAEYIRESLLEERMQDEQAHREELKKQLQYDLVKAFHPDAGELQLAFGANEKDDGSPQPLLDPELSIPSPIGQKPNDVEAVPLTYKD 564
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5K1G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G4_9PHAE) HSP 1 Score: 103 bits (258), Expect = 8.790e-23 Identity = 70/171 (40.94%), Postives = 92/171 (53.80%), Query Frame = -2 Query: 104 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGNCAE-----------EAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQAL------------------QAVRAEVEADAEAWRRGVKTDVLPTPELSPDLHIGLKPTDVEALPVSYKE-RCRKVQV 526 YDPAD RYP G EG++ W S+ GP RHGL+ GRTR QTRE+ E EA L+ + E GGA IV +Y+CNSLV+++ EEQ QA AEV+A + LP P+LS IG KP+DV+A+P++YK+ C K +V Sbjct: 331 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRYQTREMQGAGEMSGPGETPVPKEALLATILET-GGAGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASG-------SSQPLPDPQLSMTSSIGQKPSDVKAVPMTYKDVMCSKCKV 493
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5K494_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K494_9PHAE) HSP 1 Score: 103 bits (258), Expect = 9.230e-23 Identity = 68/162 (41.98%), Postives = 87/162 (53.70%), Query Frame = -2 Query: 128 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGNCA-----------EEAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQAL------------------QAVRAEVEADAEAWRRGVKTDVLPTPELSPDLHIGLKPTDVEALPVSYK 526 YDPAD RYP G EG++ W S+ GP RHGL+ GRTR QTRE+ EEA L+ + E GG IV +Y+CNSLV+++ EEQ QA RAEV+A + LP P+LS IG KP+DVEA+P++YK Sbjct: 101 YDPADDRYPGGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWQEEQTRGMEEMYRREMQEVLGPEQQAFRAEVDASE-------SSQPLPDPQLSMTSPIGQKPSDVEAVPMTYK 254
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE) HSP 1 Score: 104 bits (259), Expect = 9.850e-23 Identity = 69/164 (42.07%), Postives = 93/164 (56.71%), Query Frame = -2 Query: 104 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGNCA-----------EEAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQAL---QAVRAEVE--ADAEAWRRGVKTDV------LPTPELSPDLHIGLKPTDVEALPVSYKE-RCRKVQV 526 YDPAD RYP G EG++ W S+ GP RHGL+ GRTR QTRE+ EEA L+ + E GG IV +Y+CNSLV+++ EEQ + R E++ + E G + D LP P+LS IG KP+DVEA+P++YK+ C K +V Sbjct: 351 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVSGPEQQAFGAEVDASGSSQPLPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKV 513
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5JD36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD36_9PHAE) HSP 1 Score: 103 bits (256), Expect = 1.450e-22 Identity = 68/147 (46.26%), Postives = 84/147 (57.14%), Query Frame = -2 Query: 125 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGN---------CAEEAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQALQAVRAEVEADAEAWRRGVKTDVLPTPELSPDLH----IGLKPTDVEALPVSYKE 526 YDPADSRYPSG EG++ W SS G R+ LQ GRTR Q REL + EEA LS V E E G EIVAEY+ SL+E+R+ +EQA + + A+ K D P P L P+ IG KP DVEA P++YK+ Sbjct: 123 YDPADSRYPSGTEGKKLLWRASSAGQLRYVLQPGRTRKQIRELRSSEEEPSEAPAPEEALLSTVLETENGPEIVAEYIRESLLEERMQDEQAHRELEL-------AFIANEKDDGSPQPLLDPEPSSPSPIGQKPNDVEAAPLTYKD 262
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE) HSP 1 Score: 103 bits (257), Expect = 1.820e-22 Identity = 70/171 (40.94%), Postives = 91/171 (53.22%), Query Frame = -2 Query: 104 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGNCA-----------EEAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQAL------------------QAVRAEVEADAEAWRRGVKTDVLPTPELSPDLHIGLKPTDVEALPVSYKE-RCRKVQV 526 YDPAD RYP G EG++ W S+ GP RHGL+ GRTR QTRE+ EEA L+ + E GG IV +Y+CNSLV+++ EEQ QA AEV+A + LP P+LS IG KP+DVEA+P++YK+ C K +V Sbjct: 210 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWDEEQTRCMEEMYRREMQEVLGPEQQAFGAEVDASG-------SSQPLPDPQLSITSPIGQKPSDVEAVPMTYKDVMCSKYKV 372
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE) HSP 1 Score: 103 bits (256), Expect = 2.350e-22 Identity = 67/164 (40.85%), Postives = 89/164 (54.27%), Query Frame = -2 Query: 104 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGNCA-----------EEAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQAL-----------QAVRAEVEADAEAWRRGVKTDVLPTPELSPDLHIGLKPTDVEALPVSYKE-RCRKVQV 526 YDPAD RYP G EG++ W S+ GP RHGL GRTR QTRE+ EEA L+ + E GG IV +Y+CNSLV+++ EEQ + + E +A A + LP P+LS IG KP+DVEA+P++YK+ C K +V Sbjct: 309 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLDSGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAVGAAVDASGSSQPLPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKV 471
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5JH49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH49_9PHAE) HSP 1 Score: 102 bits (255), Expect = 2.410e-22 Identity = 69/171 (40.35%), Postives = 91/171 (53.22%), Query Frame = -2 Query: 104 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGNCA-----------EEAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQAL------------------QAVRAEVEADAEAWRRGVKTDVLPTPELSPDLHIGLKPTDVEALPVSYKE-RCRKVQV 526 YDPAD RYP G EG++ W S+ GP RHGL+ GRTR QTRE+ EEA L+ + E GG IV +Y+CNSLV+++ +EQ QA AEV+A + LP P+LS IG KP+DVEA+P++YK+ C K +V Sbjct: 167 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWDQEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASG-------SSQPLPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKV 329
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5K0G8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G8_9PHAE) HSP 1 Score: 103 bits (256), Expect = 2.440e-22 Identity = 69/164 (42.07%), Postives = 91/164 (55.49%), Query Frame = -2 Query: 104 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGNCA-----------EEAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQAL---QAVRAEVEA--DAEAWRRGVKTDV------LPTPELSPDLHIGLKPTDVEALPVSYKE-RCRKVQV 526 YDPAD RYP G EG++ W S+ GP RHGL+ GRTR QTRE+ EEA L+ + E GG IV +Y+CNSLV+++ EEQ + R E++ E G + D LP P+LS IG KP+DVEA+P++YK+ C K V Sbjct: 573 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGYSQPLPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKCMV 735 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig17147.4764.1 >prot_L-elsbetiae_contig17147.4764.1 ID=prot_L-elsbetiae_contig17147.4764.1|Name=mRNA_L-elsbetiae_contig17147.4764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp MCKSGLSSGVGSTSVLTPRRQASASASTSARTAWSACSSARRSSTSELQTback to top mRNA from alignment at L-elsbetiae_contig17147:220..746+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig17147.4764.1 ID=mRNA_L-elsbetiae_contig17147.4764.1|Name=mRNA_L-elsbetiae_contig17147.4764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=527bp|location=Sequence derived from alignment at L-elsbetiae_contig17147:220..746+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig17147:220..746+ >mRNA_L-elsbetiae_contig17147.4764.1 ID=mRNA_L-elsbetiae_contig17147.4764.1|Name=mRNA_L-elsbetiae_contig17147.4764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig17147:220..746+ (Laminarionema elsbetiae ELsaHSoW15)back to top |