mRNA_L-elsbetiae_contig17147.4764.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17147.4764.1
Unique NamemRNA_L-elsbetiae_contig17147.4764.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5JFZ2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFZ2_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 4.570e-23
Identity = 70/171 (40.94%), Postives = 92/171 (53.80%), Query Frame = -2
Query:  104 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGNCAE-----------EAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQAL------------------QAVRAEVEADAEAWRRGVKTDVLPTPELSPDLHIGLKPTDVEALPVSYKE-RCRKVQV 526
            YDPAD RYP G EG++  W  S+ GP RHGL+ GRTR QTR++    E           EA L+ + E  GG EIV +Y+CNSLV+++  EEQ                    QA  AEV+A          +  LP P+LS    IG KP+DVEA+P++YK+  C K +V
Sbjct:  133 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTRKMQGAGEMXXXXXXXXXEEALLATILET-GGTEIVQDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASG-------SSQPLPDPQLSMTSPIGQKPSDVEAVPMTYKDGMCSKYKV 295          
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5K0Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z3_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 5.380e-23
Identity = 70/160 (43.75%), Postives = 90/160 (56.25%), Query Frame = -2
Query:  125 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGN---------CAEEAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQA-LQAVRAEVEADAE------------AWRRGVKTDVLPTPELSPDLHI----GLKPTDVEALPVSYKE 526
            YDP DSRYPSG EG++  W  S  G  RH LQ GRTR QTREL +           EEA LS V E E G EIVAEY+  SL+E+R+ +EQA  + ++ +++ D              A+    K D  P P L P+L I    G KP DVEA+P++YK+
Sbjct:  405 YDPVDSRYPSGTEGKKLLWGASCAGQLRHKLQTGRTRKQTRELRSSEQEPSVAPAPEEALLSTVLETENGPEIVAEYIRESLLEERMQDEQAHREELKKQLQYDLVKAFHPDAGELQLAFGANEKDDGSPQPLLDPELSIPSPIGQKPNDVEAVPLTYKD 564          
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5K1G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G4_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 8.790e-23
Identity = 70/171 (40.94%), Postives = 92/171 (53.80%), Query Frame = -2
Query:  104 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGNCAE-----------EAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQAL------------------QAVRAEVEADAEAWRRGVKTDVLPTPELSPDLHIGLKPTDVEALPVSYKE-RCRKVQV 526
            YDPAD RYP G EG++  W  S+ GP RHGL+ GRTR QTRE+    E           EA L+ + E  GGA IV +Y+CNSLV+++  EEQ                    QA  AEV+A          +  LP P+LS    IG KP+DV+A+P++YK+  C K +V
Sbjct:  331 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRYQTREMQGAGEMSGPGETPVPKEALLATILET-GGAGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASG-------SSQPLPDPQLSMTSSIGQKPSDVKAVPMTYKDVMCSKCKV 493          
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5K494_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K494_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 9.230e-23
Identity = 68/162 (41.98%), Postives = 87/162 (53.70%), Query Frame = -2
Query:  128 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGNCA-----------EEAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQAL------------------QAVRAEVEADAEAWRRGVKTDVLPTPELSPDLHIGLKPTDVEALPVSYK 526
            YDPAD RYP G EG++  W  S+ GP RHGL+ GRTR QTRE+               EEA L+ + E  GG  IV +Y+CNSLV+++  EEQ                    QA RAEV+A          +  LP P+LS    IG KP+DVEA+P++YK
Sbjct:  101 YDPADDRYPGGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWQEEQTRGMEEMYRREMQEVLGPEQQAFRAEVDASE-------SSQPLPDPQLSMTSPIGQKPSDVEAVPMTYK 254          
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 9.850e-23
Identity = 69/164 (42.07%), Postives = 93/164 (56.71%), Query Frame = -2
Query:  104 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGNCA-----------EEAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQAL---QAVRAEVE--ADAEAWRRGVKTDV------LPTPELSPDLHIGLKPTDVEALPVSYKE-RCRKVQV 526
            YDPAD RYP G EG++  W  S+ GP RHGL+ GRTR QTRE+               EEA L+ + E  GG  IV +Y+CNSLV+++  EEQ     +  R E++  +  E    G + D       LP P+LS    IG KP+DVEA+P++YK+  C K +V
Sbjct:  351 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVSGPEQQAFGAEVDASGSSQPLPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKV 513          
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5JD36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD36_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.450e-22
Identity = 68/147 (46.26%), Postives = 84/147 (57.14%), Query Frame = -2
Query:  125 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGN---------CAEEAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQALQAVRAEVEADAEAWRRGVKTDVLPTPELSPDLH----IGLKPTDVEALPVSYKE 526
            YDPADSRYPSG EG++  W  SS G  R+ LQ GRTR Q REL +           EEA LS V E E G EIVAEY+  SL+E+R+ +EQA + +         A+    K D  P P L P+      IG KP DVEA P++YK+
Sbjct:  123 YDPADSRYPSGTEGKKLLWRASSAGQLRYVLQPGRTRKQIRELRSSEEEPSEAPAPEEALLSTVLETENGPEIVAEYIRESLLEERMQDEQAHRELEL-------AFIANEKDDGSPQPLLDPEPSSPSPIGQKPNDVEAAPLTYKD 262          
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.820e-22
Identity = 70/171 (40.94%), Postives = 91/171 (53.22%), Query Frame = -2
Query:  104 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGNCA-----------EEAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQAL------------------QAVRAEVEADAEAWRRGVKTDVLPTPELSPDLHIGLKPTDVEALPVSYKE-RCRKVQV 526
            YDPAD RYP G EG++  W  S+ GP RHGL+ GRTR QTRE+               EEA L+ + E  GG  IV +Y+CNSLV+++  EEQ                    QA  AEV+A          +  LP P+LS    IG KP+DVEA+P++YK+  C K +V
Sbjct:  210 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWDEEQTRCMEEMYRREMQEVLGPEQQAFGAEVDASG-------SSQPLPDPQLSITSPIGQKPSDVEAVPMTYKDVMCSKYKV 372          
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.350e-22
Identity = 67/164 (40.85%), Postives = 89/164 (54.27%), Query Frame = -2
Query:  104 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGNCA-----------EEAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQAL-----------QAVRAEVEADAEAWRRGVKTDVLPTPELSPDLHIGLKPTDVEALPVSYKE-RCRKVQV 526
            YDPAD RYP G EG++  W  S+ GP RHGL  GRTR QTRE+               EEA L+ + E  GG  IV +Y+CNSLV+++  EEQ             + +  E +A   A      +  LP P+LS    IG KP+DVEA+P++YK+  C K +V
Sbjct:  309 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLDSGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAVGAAVDASGSSQPLPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKV 471          
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5JH49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH49_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.410e-22
Identity = 69/171 (40.35%), Postives = 91/171 (53.22%), Query Frame = -2
Query:  104 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGNCA-----------EEAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQAL------------------QAVRAEVEADAEAWRRGVKTDVLPTPELSPDLHIGLKPTDVEALPVSYKE-RCRKVQV 526
            YDPAD RYP G EG++  W  S+ GP RHGL+ GRTR QTRE+               EEA L+ + E  GG  IV +Y+CNSLV+++  +EQ                    QA  AEV+A          +  LP P+LS    IG KP+DVEA+P++YK+  C K +V
Sbjct:  167 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWDQEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASG-------SSQPLPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKV 329          
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Match: A0A6H5K0G8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G8_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.440e-22
Identity = 69/164 (42.07%), Postives = 91/164 (55.49%), Query Frame = -2
Query:  104 YDPADSRYPSGREGQRFAWTTSSGGPRRHGLQLGRTRGQTRELGNCA-----------EEAFLSAVAEQEGGAEIVAEYVCNSLVEDRLAEEQAL---QAVRAEVEA--DAEAWRRGVKTDV------LPTPELSPDLHIGLKPTDVEALPVSYKE-RCRKVQV 526
            YDPAD RYP G EG++  W  S+ GP RHGL+ GRTR QTRE+               EEA L+ + E  GG  IV +Y+CNSLV+++  EEQ     +  R E++     E    G + D       LP P+LS    IG KP+DVEA+P++YK+  C K  V
Sbjct:  573 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGYSQPLPDPQLSMTSPIGQKPSDVEAVPMTYKDVMCSKCMV 735          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17147.4764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFZ2_9PHAE4.570e-2340.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0Z3_9PHAE5.380e-2343.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1G4_9PHAE8.790e-2340.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K494_9PHAE9.230e-2341.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE9.850e-2342.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JD36_9PHAE1.450e-2246.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1I0_9PHAE1.820e-2240.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE2.350e-2240.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JH49_9PHAE2.410e-2240.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0G8_9PHAE2.440e-2242.07Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17147contigL-elsbetiae_contig17147:220..746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size527
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17147.4764.1prot_L-elsbetiae_contig17147.4764.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17147 393..725 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.6941175-UTR-L-elsbetiae_contig17147:219..3921622815714.6941175-UTR-L-elsbetiae_contig17147:219..392Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17147 220..392 +
1691683055.1714334-UTR-L-elsbetiae_contig17147:219..3921691683055.1714334-UTR-L-elsbetiae_contig17147:219..392Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17147 220..392 +
1622815714.7151113-UTR-L-elsbetiae_contig17147:725..7461622815714.7151113-UTR-L-elsbetiae_contig17147:725..746Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17147 726..746 +
1691683055.1919975-UTR-L-elsbetiae_contig17147:725..7461691683055.1919975-UTR-L-elsbetiae_contig17147:725..746Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17147 726..746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.7044587-CDS-L-elsbetiae_contig17147:392..7251622815714.7044587-CDS-L-elsbetiae_contig17147:392..725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17147 393..725 +
1691683055.181649-CDS-L-elsbetiae_contig17147:392..7251691683055.181649-CDS-L-elsbetiae_contig17147:392..725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17147 393..725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17147.4764.1

>prot_L-elsbetiae_contig17147.4764.1 ID=prot_L-elsbetiae_contig17147.4764.1|Name=mRNA_L-elsbetiae_contig17147.4764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MCKSGLSSGVGSTSVLTPRRQASASASTSARTAWSACSSARRSSTSELQT
YSATISAPPSCSATADRKASSAQFPNSRVCPRVRPSCRPWRRGPPDEVVQ
ANRCPSRPEG*
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mRNA from alignment at L-elsbetiae_contig17147:220..746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17147.4764.1 ID=mRNA_L-elsbetiae_contig17147.4764.1|Name=mRNA_L-elsbetiae_contig17147.4764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=527bp|location=Sequence derived from alignment at L-elsbetiae_contig17147:220..746+ (Laminarionema elsbetiae ELsaHSoW15)
GATAGGTTTGCGCCCGTCGGGTACTTCGTCTACATCTGCGAAGGTTCCCG TCGTCTTATGCCCGTCCATCTCTTTTTGCATGGCCCTGTCCCACAAGTCT CTGTACTTGGACCTTTCTACATCTTTCTTTGTACGACACCGGGAGAGCCT CTACATCAGTTGGTTTGAGCCCAATGTGTAAGTCGGGACTTAGCTCTGGG GTGGGGAGCACGTCGGTCTTGACCCCACGCCGCCAGGCTTCTGCGTCGGC TTCCACTTCGGCACGTACAGCTTGGAGCGCTTGCTCCTCCGCCAGACGGT CCTCCACCAGCGAGTTGCAGACGTATTCCGCGACTATCTCCGCTCCGCCT TCCTGCTCCGCGACCGCTGACAGAAAAGCCTCCTCGGCGCAGTTTCCCAA CTCACGAGTCTGCCCCCGCGTGCGACCGAGCTGCAGGCCATGGCGTCGCG GCCCTCCCGACGAGGTGGTCCAGGCAAACCGTTGTCCCTCTCGTCCTGAA GGGTAGCGGCTGTCGGCGGGGTCATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17147:220..746+

>mRNA_L-elsbetiae_contig17147.4764.1 ID=mRNA_L-elsbetiae_contig17147.4764.1|Name=mRNA_L-elsbetiae_contig17147.4764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig17147:220..746+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTAAGTCGGGACTTAGCTCTGGGGTGGGGAGCACGTCGGTCTTGAC
CCCACGCCGCCAGGCTTCTGCGTCGGCTTCCACTTCGGCACGTACAGCTT
GGAGCGCTTGCTCCTCCGCCAGACGGTCCTCCACCAGCGAGTTGCAGACG
TATTCCGCGACTATCTCCGCTCCGCCTTCCTGCTCCGCGACCGCTGACAG
AAAAGCCTCCTCGGCGCAGTTTCCCAACTCACGAGTCTGCCCCCGCGTGC
GACCGAGCTGCAGGCCATGGCGTCGCGGCCCTCCCGACGAGGTGGTCCAG
GCAAACCGTTGTCCCTCTCGTCCTGAAGGGTAGATGTGTAAGTCGGGACT
TAGCTCTGGGGTGGGGAGCACGTCGGTCTTGACCCCACGCCGCCAGGCTT
CTGCGTCGGCTTCCACTTCGGCACGTACAGCTTGGAGCGCTTGCTCCTCC
GCCAGACGGTCCTCCACCAGCGAGTTGCAGACGTATTCCGCGACTATCTC
CGCTCCGCCTTCCTGCTCCGCGACCGCTGACAGAAAAGCCTCCTCGGCGC
AGTTTCCCAACTCACGAGTCTGCCCCCGCGTGCGACCGAGCTGCAGGCCA
TGGCGTCGCGGCCCTCCCGACGAGGTGGTCCAGGCAAACCGTTGTCCCTC
TCGTCCTGAAGGGTAG
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