mRNA_L-elsbetiae_contig17043.4722.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17043.4722.1
Unique NamemRNA_L-elsbetiae_contig17043.4722.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig17043.4722.1 vs. uniprot
Match: D7FK42_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI)

HSP 1 Score: 449 bits (1156), Expect = 1.020e-144
Identity = 277/376 (73.67%), Postives = 295/376 (78.46%), Query Frame = 1
Query:    1 AACEGEDKEAAEAGGYRLPLSCEVGYNERWLALAKLVAISTIKVAFNAQVALMPLIAWRRRPESGAFIARAAAXXXXXXXXXXXXXXXGSGDKESGRSGASDGSQQQPADQYSTVSGLFDPRVAAWMSDTGTTDKGLEFEALCVSWLKQEAAHAGGAGARSSGEGPSAAIVAAVLRAEECCKRSLALAEQLSVELERAKMLAACEQQVEMPAISVLAGMEVSGVVFLPERVTRFSAALQQHLESLERTAVVAVGGRQFNLASPDQVADILFNHLKLPSPPVKAGSLHASTSAEVLAGLQGKHAVVAPIFEFRGVNKYKTTYVDKLAERALGAAAAEGATTASQMAEEGAVRIHAAWNQTSARTGRLSCSRPNLQQV 1128
            AAC GEDKEAA+A GY LPL CE  Y+ERW A AKLVA+   KVA      LMPLIAWRRRPES  F+AR+AAXXXXXXXXXXXXXXX               S +     ++TVSGLFD RVAAWM+DTG  DK LEFEALCVSWLK E + A G  A S   G   AIVAAV RAE CC+R+LALA ++S ELE AKMLAACEQ VEMPAI VLAGMEVSGVVFLPERVTRFS AL  HLE L+RTAV AVGGR FNLASPDQVAD+LF HLKLPSPPVKAGS+HASTSAEVL GLQGKHAVVAPI EFRGVNKYKTTYVDKLAERALGAAAAE A  ASQ A  GA RIHA WNQTSARTGRLSCSRPNLQQ+
Sbjct:  551 AACVGEDKEAAKAAGYHLPLDCETSYDERWAAFAKLVALPVKKVA------LMPLIAWRRRPESRTFLARSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLSTKH----HTTVSGLFDTRVAAWMTDTGKADKALEFEALCVSWLKGEGSDAEGVNAGSGDGGRLPAIVAAVARAEGCCRRNLALAGKISAELEGAKMLAACEQ-VEMPAIPVLAGMEVSGVVFLPERVTRFSDALGNHLEGLKRTAVKAVGGRDFNLASPDQVADVLFKHLKLPSPPVKAGSVHASTSAEVLEGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAESAVPASQGA--GAARIHATWNQTSARTGRLSCSRPNLQQM 913          
BLAST of mRNA_L-elsbetiae_contig17043.4722.1 vs. uniprot
Match: A0A6H5J5W8_9PHAE (POLAc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5W8_9PHAE)

HSP 1 Score: 389 bits (998), Expect = 3.820e-124
Identity = 252/448 (56.25%), Postives = 270/448 (60.27%), Query Frame = 1
Query:    4 ACEGEDKEAAEAGGYRLPLSCEVGYNERWLALAKLVAISTIKVAFNAQVALMPLIAWRRRPESGAFIARAAAXXXXXXXXXXXXXXXGSGDKESGRSGASDGSQQQPA-----------------DQYSTVSGLFDPRVAAWMSDTGTTDKGLEFEALCVSWLKQE---AAH---AGGAGARSSGEGPSAAIVAAVLRAEECCKRSLALAEQLSVELERAKMLAACEQQVEMPAISVLAGMEVSGVVFLPERVTRFSAALQQHLESLERTAVVAVGGRQFNLASPDQ--------------------------------------------------VADILFNHLKLPSPPVKAGSLHASTSAEVLAGLQGKHAVVAPIFEFRGVNKYKTTYVDKLAERALGAAAAEGATTASQMAEEGAVRIHAAWNQTSARTGRLSCSRPNLQQV 1128
            AC GEDKEAAEA GY LPL CEV                          ALMPLIAWRRRPES  F+AR+AA                     +   G SD    +P+                   ++TVS LFD RVAAWM+DTG  DK LEFEALCVSWLK E   A H   A G  ARS   G   AIVAAV+ AE CC+R+LALA ++S ELE AKMLAACEQ VEMP + VLAGMEVSGVVFLPERVTRFS AL  HLE L+RTAV AVGGR FNLASPDQ                                                  VADILF HLKLPSPP+KAGS+HASTSAEVL GLQGKHAVVAPI EFRGVNKYKTTYVDKLAERALGAAAA+ A  ASQ A  GA RIHA WNQTSARTGRLSCSRPNLQQ 
Sbjct:  522 ACVGEDKEAAEAAGYHLPLDCEV--------------------------ALMPLIAWRRRPESRTFLARSAA---------------------AAAEGGSDRDGHEPSVDSXXXXXXXXXXHVSTKHHTTVSRLFDTRVAAWMTDTGKADKALEFEALCVSWLKGEGSDAVHKPDAEGVNARSGDGGRLPAIVAAVVHAEGCCRRNLALAGKISAELEGAKMLAACEQ-VEMPTVPVLAGMEVSGVVFLPERVTRFSNALGNHLEGLKRTAVKAVGGRDFNLASPDQAKKQQIGKRMQQGRIDGSSRSRRRVASFRTGSCQRGLREGAHGGQGGGTAVADILFKHLKLPSPPLKAGSVHASTSAEVLEGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAADSAVPASQGA--GATRIHATWNQTSARTGRLSCSRPNLQQA 919          
BLAST of mRNA_L-elsbetiae_contig17043.4722.1 vs. uniprot
Match: A0A2T0XSH9_9BACT (DNA polymerase I n=2 Tax=Marinilabilia salmonicolor TaxID=989 RepID=A0A2T0XSH9_9BACT)

HSP 1 Score: 111 bits (278), Expect = 4.980e-23
Identity = 74/193 (38.34%), Postives = 105/193 (54.40%), Query Frame = 1
Query:  550 SLALAEQLSVELERAKMLAACEQQVEMPAISVLAGMEVSGVVFLPERVTRFSAALQQHLESLERTAVVAVGGRQFNLASPDQVADILFNHLKLPSPPVKAGSLHASTSAEVLAGLQGKHAVVAPIFEFRGVNKYKTTYVDKLAERALGAAAAEGATTASQMAEEGAVRIHAAWNQTSARTGRLSCSRPNLQQV 1128
            +L L E L  ELE  KM++  E  VEMP + VLA ME  GVV   + +  F+  LQQ +E+LE+  ++   G  FN+ASP QV ++LF+ LK+ +   K  S   ST+ E L  L+ KH ++  I EFRG+ K   TYV+ L +                +  +   R+H ++NQ    TGRLS S PNLQ +
Sbjct:  500 TLQLKEPLLKELEELKMVSLFED-VEMPLLKVLAEMEYHGVVLDSDALADFAGKLQQRIEALEK-GIIEDAGTDFNVASPRQVGEVLFDKLKIDAKAKKTKSGQYSTNEETLQKLKDKHPIIEKILEFRGLKKLLNTYVEALPK----------------LINKDTGRLHTSFNQAVVVTGRLSSSNPNLQNI 674          
BLAST of mRNA_L-elsbetiae_contig17043.4722.1 vs. uniprot
Match: A0A6N6MAB0_9FLAO (DNA polymerase I n=1 Tax=Salibacter halophilus TaxID=1803916 RepID=A0A6N6MAB0_9FLAO)

HSP 1 Score: 107 bits (266), Expect = 1.770e-21
Identity = 80/264 (30.30%), Postives = 130/264 (49.24%), Query Frame = 1
Query:  352 LFDPRVAAWMSDTGTTDKGLEFEA-LCVSWLKQEAAHAGGAGARSSGEGPSAAIVAAVLRAEECCKRSLALAEQLSVELERAKMLAACEQQV----EMPAISVLAGMEVSGVVFLPERVTRFSAALQQHLESLERTAVVAVGGRQFNLASPDQVADILFNHLKLPSPPVKAGSLHASTSAEVLAGLQGKHAVVAPIFEFRGVNKYKTTYVDKLAERALGAAAAEGATTASQMAEEGAVRIHAAWNQTSARTGRLSCSRPNLQQV 1128
            LFD  +A +++D     + ++  A   +S+  +  +   G   ++       A+  A   A E    +L L  +L  +L++ K     EQ +    EMP ++VL+ ME  G+    + +  +S  LQ+ ++S+E+  +  + G +FN+ SP QV ++LF+ LK+   P K  S   +T+ E L  + GKH +V  I E+R V K K TYVD L                  +  E + RIH  +NQ  A TGRLS  +PNLQ +
Sbjct:  436 LFDTMIAHYLTDPENNRRNMDVLAETYLSYRPKPISDLIGKKGKNQKSMREVAVEEAAEYAGEDADITLQLKSELEKDLKKGK-----EQNIFDDIEMPLVNVLSDMECEGIKMDRDILDDYSKNLQKEIDSIEK-GIYEIAGHEFNIGSPKQVGEVLFDELKVTDKPKKTKSGQYATNEEALQSIAGKHEIVEQILEYREVVKLKNTYVDPLPN----------------LINERSGRIHTTFNQVRAATGRLSSDKPNLQNI 677          
BLAST of mRNA_L-elsbetiae_contig17043.4722.1 vs. uniprot
Match: UPI00036303B8 (DNA polymerase I n=1 Tax=Eudoraea adriatica TaxID=446681 RepID=UPI00036303B8)

HSP 1 Score: 106 bits (264), Expect = 3.230e-21
Identity = 69/190 (36.32%), Postives = 103/190 (54.21%), Query Frame = 1
Query:  559 LAEQLSVELERAKMLAACEQQVEMPAISVLAGMEVSGVVFLPERVTRFSAALQQHLESLERTAVVAVGGRQFNLASPDQVADILFNHLKLPSPPVKAGSLHASTSAEVLAGLQGKHAVVAPIFEFRGVNKYKTTYVDKLAERALGAAAAEGATTASQMAEEGAVRIHAAWNQTSARTGRLSCSRPNLQQV 1128
            LA Q + EL  AK      + +E+P +SVLA ME+ G+    E +   S  L + +++LE   +    G +FN+ASP Q+ +ILFN LKL + P K  +   STS +VL+ L  +H ++  +  +RG+ K K+TY+D L E+                 EE   R+H  + QT A TGRLS + PNLQ +
Sbjct:  524 LANQFAKELREAKTQELF-RNIEVPLVSVLADMELEGINLDKEFLHSLSKDLDEDIKNLE-VKIYQEAGEEFNIASPKQLGEILFNKLKLVNKPKKTKTGQYSTSEDVLSSLAKEHDIIKDVLNYRGLAKLKSTYIDALPEQV----------------EESTGRVHTDYMQTVAATGRLSSNNPNLQNI 695          
BLAST of mRNA_L-elsbetiae_contig17043.4722.1 vs. uniprot
Match: A0A1J5A6P1_9CHLR (DNA polymerase I n=1 Tax=Anaerolineae bacterium CG2_30_64_16 TaxID=1805005 RepID=A0A1J5A6P1_9CHLR)

HSP 1 Score: 105 bits (261), Expect = 6.480e-21
Identity = 88/263 (33.46%), Postives = 128/263 (48.67%), Query Frame = 1
Query:  352 LFDPRVAAWMSDTGTTDKGLEFEA---LCVSWLKQEAAHAGGAGARSSGEGPSAAIVAAVLRAEECCKRSLALAEQLSVELERAKMLAACEQQVEMPAISVLAGMEVSGVVFLPERVTRFSAALQQHLESLERTAVVAVGGRQFNLASPDQVADILFNHLKLPSPPVKAGSLHA-STSAEVLAGLQGKHAVVAPIFEFRGVNKYKTTYVDKLAERALGAAAAEGATTASQMAEEGAVRIHAAWNQTSARTGRLSCSRPNLQQV 1128
            L D  + AW+ D G+   GL+ +A   L V           G    +  + P+A   A    A      +LALA+QL  EL   K L +  + VEMP + VL  ME +G+    + + + S  L   L+ +E   +  + G  FN+ S  Q++D+LF  L LP+  +K     A ST+A+VL GL+GKH +V  I E R ++K  +TYV+ L                  M      R+H ++NQT A TGRLS S PNLQ +
Sbjct:  174 LVDTMIGAWLIDPGSRGLGLKDQAWTRLKVEMTPISELIGTGKNQITMDQAPAAQAAA---YASADAAMTLALADQLLPELAE-KGLTSLFRDVEMPLVPVLVAMETAGIKLDVDYLAQMSVELTARLQQIE-LEIQQIAGYAFNINSTQQLSDVLFGKLGLPTQGLKKTKAGAYSTAADVLEGLRGKHEIVDLILEQRQLSKLLSTYVNALPT----------------MVNPRTGRLHTSFNQTGAETGRLSSSAPNLQNI 415          
BLAST of mRNA_L-elsbetiae_contig17043.4722.1 vs. uniprot
Match: A0A7C2VKE9_9BACT (DNA polymerase I n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C2VKE9_9BACT)

HSP 1 Score: 105 bits (261), Expect = 7.260e-21
Identity = 70/186 (37.63%), Postives = 100/186 (53.76%), Query Frame = 1
Query:  571 LSVELERAKMLAACEQQVEMPAISVLAGMEVSGVVFLPERVTRFSAALQQHLESLERTAVVAVGGRQFNLASPDQVADILFNHLKLPSPPVKAGSLHASTSAEVLAGLQGKHAVVAPIFEFRGVNKYKTTYVDKLAERALGAAAAEGATTASQMAEEGAVRIHAAWNQTSARTGRLSCSRPNLQQV 1128
            L+  LE+   L    ++VEMP +SVLA ME +GV     R+ R S  L + LE+L    + A+ G  FN+ SP Q+++ILF+ L L S  +++G    ST A VL  L G H ++  I ++R ++K K TYVDKL                  +      R+H ++NQT   TGRLS S PNLQ +
Sbjct:  384 LNSRLEKQPALKKLFEEVEMPLVSVLAAMESNGVSIDSGRLKRMSGELAETLENLT-VKIYALAGTSFNIDSPKQLSEILFDRLGLSS--IRSGKTGRSTDAAVLEQLSGLHPIIELILQYRQLSKLKNTYVDKLGS----------------LINPRTSRLHTSFNQTITATGRLSSSDPNLQNI 550          
BLAST of mRNA_L-elsbetiae_contig17043.4722.1 vs. uniprot
Match: A0A2E5XSK4_9FLAO (DNA polymerase I n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2E5XSK4_9FLAO)

HSP 1 Score: 105 bits (261), Expect = 7.810e-21
Identity = 66/169 (39.05%), Postives = 88/169 (52.07%), Query Frame = 1
Query:  622 VEMPAISVLAGMEVSGVVFLPERVTRFSAALQQHLESLERTAVVAVGGRQFNLASPDQVADILFNHLKLPSPPVKAGSLHASTSAEVLAGLQGKHAVVAPIFEFRGVNKYKTTYVDKLAERALGAAAAEGATTASQMAEEGAVRIHAAWNQTSARTGRLSCSRPNLQQV 1128
            +E+P I VL+ ME+ G+    + +  FS  L+  +  L   +V  + G  FNLASP Q+  +LF HLKL   P K  +   STS E L  L+GKH ++  I EFR + K K+TYVD L E                +A E   RIH  + Q  A TGRLS   PNLQ +
Sbjct:  530 IELPLIPVLSAMEIEGIRIDIDALNDFSKELESRILKLN-DSVQTIAGIPFNLASPKQLGQVLFEHLKLVDKPKKTKTGQYSTSEETLLKLKGKHEIIDDILEFRQLQKLKSTYVDALPE----------------LASEKEERIHTTYQQAVASTGRLSSINPNLQNI 681          
BLAST of mRNA_L-elsbetiae_contig17043.4722.1 vs. uniprot
Match: A0A1K1PHI6_SELRU (DNA polymerase I n=5 Tax=Selenomonas TaxID=970 RepID=A0A1K1PHI6_SELRU)

HSP 1 Score: 104 bits (260), Expect = 1.020e-20
Identity = 80/213 (37.56%), Postives = 115/213 (53.99%), Query Frame = 1
Query:  490 EGPSAAIVAAVLRAEECCKRSLALAEQLSVELERAKMLAACEQQVEMPAISVLAGMEVSGVVFLPERVTRFSAALQQHLESLERTAVVAVGGRQFNLASPDQVADILFNHLKLPSPPVKAGSLHASTSAEVLAGLQGKHAVVAPIFEFRGVNKYKTTYVDKLAERALGAAAAEGATTASQMAEEGAVRIHAAWNQTSARTGRLSCSRPNLQQV 1128
            E  S A   AV  A         LAE+L  EL+  K+ A    ++E+P + VLA ME +G+    E + +    L+  L+SL++   V + G +FN+ SP Q+ ++LF  L+LP  PVK      ST+AEVL  L+ KH VV  +  +R ++K K+TY+D L E  +GA   EG             RI+ ++NQT   TGRLS S PNLQ +
Sbjct:  431 ENLSGAEAEAVWEAYALASLQPVLAEKLK-ELQMDKLYA----EIELPLVEVLAAMEQNGIYINREELVKKGEELEARLQSLQQDIYV-LAGTEFNINSPKQLGEVLFERLELP--PVKKTKTGYSTNAEVLESLRDKHPVVEQVLHYRTLSKLKSTYIDGLQEL-IGA---EG-------------RIYTSFNQTVTATGRLSSSDPNLQNI 618          
BLAST of mRNA_L-elsbetiae_contig17043.4722.1 vs. uniprot
Match: A0A2T4WFJ9_9BACT (DNA polymerase I n=7 Tax=Bacteroidetes TaxID=976 RepID=A0A2T4WFJ9_9BACT)

HSP 1 Score: 104 bits (260), Expect = 1.060e-20
Identity = 64/171 (37.43%), Postives = 92/171 (53.80%), Query Frame = 1
Query:  616 QQVEMPAISVLAGMEVSGVVFLPERVTRFSAALQQHLESLERTAVVAVGGRQFNLASPDQVADILFNHLKLPSPPVKAGSLHASTSAEVLAGLQGKHAVVAPIFEFRGVNKYKTTYVDKLAERALGAAAAEGATTASQMAEEGAVRIHAAWNQTSARTGRLSCSRPNLQQV 1128
            + +EMP + VLA ME  G+      +  +S  L Q ++ LE T +VA+ GR FN+ SP Q+ ++LF  LKL   P K  +   +TS ++L G + KH +V  I  +R + K K+TYVD L E                +      RIH ++NQT A TGRLS + PNLQ +
Sbjct:  541 ENIEMPLVPVLARMEREGIRVDVASLNSYSRELGQLIDELEGT-IVALAGRPFNVGSPRQLGEVLFEDLKLSDKPKKTKTGQYATSEDILQGYRSKHEIVDSILTYRELKKLKSTYVDALPE----------------LVHPATGRIHTSYNQTVAATGRLSSTNPNLQNI 694          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17043.4722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK42_ECTSI1.020e-14473.67DNA-directed DNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5J5W8_9PHAE3.820e-12456.25POLAc domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A2T0XSH9_9BACT4.980e-2338.34DNA polymerase I n=2 Tax=Marinilabilia salmonicolo... [more]
A0A6N6MAB0_9FLAO1.770e-2130.30DNA polymerase I n=1 Tax=Salibacter halophilus Tax... [more]
UPI00036303B83.230e-2136.32DNA polymerase I n=1 Tax=Eudoraea adriatica TaxID=... [more]
A0A1J5A6P1_9CHLR6.480e-2133.46DNA polymerase I n=1 Tax=Anaerolineae bacterium CG... [more]
A0A7C2VKE9_9BACT7.260e-2137.63DNA polymerase I n=1 Tax=Phycisphaerales bacterium... [more]
A0A2E5XSK4_9FLAO7.810e-2139.05DNA polymerase I n=1 Tax=Flavobacteriales bacteriu... [more]
A0A1K1PHI6_SELRU1.020e-2037.56DNA polymerase I n=5 Tax=Selenomonas TaxID=970 Rep... [more]
A0A2T4WFJ9_9BACT1.060e-2037.43DNA polymerase I n=7 Tax=Bacteroidetes TaxID=976 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17043contigL-elsbetiae_contig17043:3..3536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score452.6
Seed ortholog evalue1.8e-124
Seed eggNOG ortholog2880.D7FK42
Preferred namePOL1A
KEGG rclassRC02795
KEGG koko:K02335,ko:K02349
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
Ec32 ortholog descriptionDNA-directed DNA polymerase, family A, palm domain
Ec32 orthologEc-04_005890.1
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons8
Model size1129
Cds size1128
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17043.4722.1prot_L-elsbetiae_contig17043.4722.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17043 3..3536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.4481375-CDS-L-elsbetiae_contig17043:2..711622815710.4481375-CDS-L-elsbetiae_contig17043:2..71Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17043 3..71 +
1691683052.4171302-CDS-L-elsbetiae_contig17043:2..711691683052.4171302-CDS-L-elsbetiae_contig17043:2..71Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17043 3..71 +
1622815710.4612541-CDS-L-elsbetiae_contig17043:427..5051622815710.4612541-CDS-L-elsbetiae_contig17043:427..505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17043 428..505 +
1691683052.4284413-CDS-L-elsbetiae_contig17043:427..5051691683052.4284413-CDS-L-elsbetiae_contig17043:427..505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17043 428..505 +
1622815710.4714756-CDS-L-elsbetiae_contig17043:843..11591622815710.4714756-CDS-L-elsbetiae_contig17043:843..1159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17043 844..1159 +
1691683052.4367125-CDS-L-elsbetiae_contig17043:843..11591691683052.4367125-CDS-L-elsbetiae_contig17043:843..1159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17043 844..1159 +
1622815710.4907541-CDS-L-elsbetiae_contig17043:1417..15721622815710.4907541-CDS-L-elsbetiae_contig17043:1417..1572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17043 1418..1572 +
1691683052.4488325-CDS-L-elsbetiae_contig17043:1417..15721691683052.4488325-CDS-L-elsbetiae_contig17043:1417..1572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17043 1418..1572 +
1622815710.506724-CDS-L-elsbetiae_contig17043:1955..21321622815710.506724-CDS-L-elsbetiae_contig17043:1955..2132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17043 1956..2132 +
1691683052.458235-CDS-L-elsbetiae_contig17043:1955..21321691683052.458235-CDS-L-elsbetiae_contig17043:1955..2132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17043 1956..2132 +
1622815710.5171545-CDS-L-elsbetiae_contig17043:2402..24531622815710.5171545-CDS-L-elsbetiae_contig17043:2402..2453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17043 2403..2453 +
1691683052.46912-CDS-L-elsbetiae_contig17043:2402..24531691683052.46912-CDS-L-elsbetiae_contig17043:2402..2453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17043 2403..2453 +
1622815710.5266228-CDS-L-elsbetiae_contig17043:2608..27211622815710.5266228-CDS-L-elsbetiae_contig17043:2608..2721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17043 2609..2721 +
1691683052.4775054-CDS-L-elsbetiae_contig17043:2608..27211691683052.4775054-CDS-L-elsbetiae_contig17043:2608..2721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17043 2609..2721 +
1622815710.5408173-CDS-L-elsbetiae_contig17043:3367..35361622815710.5408173-CDS-L-elsbetiae_contig17043:3367..3536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17043 3368..3536 +
1691683052.486117-CDS-L-elsbetiae_contig17043:3367..35361691683052.486117-CDS-L-elsbetiae_contig17043:3367..3536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17043 3368..3536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17043.4722.1

>prot_L-elsbetiae_contig17043.4722.1 ID=prot_L-elsbetiae_contig17043.4722.1|Name=mRNA_L-elsbetiae_contig17043.4722.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=376bp
AACEGEDKEAAEAGGYRLPLSCEVGYNERWLALAKLVAISTIKVAFNAQV
ALMPLIAWRRRPESGAFIARAAAAATAAAATAAAAAAEGSGDKESGRSGA
SDGSQQQPADQYSTVSGLFDPRVAAWMSDTGTTDKGLEFEALCVSWLKQE
AAHAGGAGARSSGEGPSAAIVAAVLRAEECCKRSLALAEQLSVELERAKM
LAACEQQVEMPAISVLAGMEVSGVVFLPERVTRFSAALQQHLESLERTAV
VAVGGRQFNLASPDQVADILFNHLKLPSPPVKAGSLHASTSAEVLAGLQG
KHAVVAPIFEFRGVNKYKTTYVDKLAERALGAAAAEGATTASQMAEEGAV
RIHAAWNQTSARTGRLSCSRPNLQQV
back to top

mRNA from alignment at L-elsbetiae_contig17043:3..3536+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17043.4722.1 ID=mRNA_L-elsbetiae_contig17043.4722.1|Name=mRNA_L-elsbetiae_contig17043.4722.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3534bp|location=Sequence derived from alignment at L-elsbetiae_contig17043:3..3536+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCTGCGAAGGAGAGGATAAAGAGGCCGCCGAGGCGGGAGGCTACCG GCTTCCCCTCTCTTGCGAGGTAAGCTCTTTCGTTGCTTCCCAAGTGCATT GTCTACCTACGTTCAATCATCCTATGAGGCGCACACCACGAAACGGGCAC CTCCCGCGCGTTTCGACGAGAGTATTAAATATTTACGCCTCTGTTTGCCC TTCAAGACTGTTTTGCGAGGATCTCATGAGAACAAGATGTACGCCATATA TCGTGGAAACCTATCCTTGAACCCGATCGACATCATTGGACGCCGGTGAC AGTTCCCCTCACCCTACACTTGCATCCTATATTATGGAGTGAAGACCACC CTCGCCTGGGCTAATCCCTTGCTTCGTTTCGGCTGTTGTTGCTGCTGCTC TGCGTTGCATGATTGTGTCCTTAAGGTGGGTTATAATGAGCGCTGGTTGG CGTTGGCGAAGCTAGTCGCCATATCCACCATAAAAGTGGCGTTCAACGCA CAGGTTAGAATCATGGTGCTATGACGGTCCGTATGGAACGTAACCTTTTG AGCATCTTACCCTACCTGAATATTTTGCGGGTATTTAGACGAATGGGCGG GGGCCCTTGAAAACATGGGTGAATAGGTTGTAATGGTGTGTGTGTATGAC CGCTGCTTTTGTCCACGTAGATATGTCGGCTCCACGTGTTTCTACCACCA GGTAGAATCGCAACCGTCACCATCTCTTGTCTTCTACCTTGCCGCCCCTA CAGTTTTACTGTTCCCCCACGCCCACCCCGCACTCGCAATGAGACCTCCT TATCTTCATCCCATGACCCCATCCCGCCGCCCTTCTCTCAGGTGGCGCTC ATGCCATTGATCGCTTGGCGTAGACGGCCCGAATCTGGGGCTTTTATTGC CCGTGCTGCTGCTGCTGCTACCGCTGCTGCTGCTACCGCTGCTGCTGCTG CTGCGGAAGGCAGCGGTGACAAGGAGAGCGGACGTAGCGGAGCTAGTGAT GGTTCGCAACAGCAGCCGGCCGACCAATACTCGACAGTTTCCGGATTATT TGATCCTCGCGTGGCTGCTTGGATGTCAGACACTGGTACCACAGACAAGG GGCTGGAATTTGAGGCACTCTGTGTTTCCTGGCTCAAGCAGGAGGCAGCA CACGCAGGTGAGAGCCGTAAGTTTAGGCTACGGTTCTGAATACGCCGGAG TCAAGTCAATTGCTGTGTATATGTACCGAGATGGTAAGTAGTGACGTTTG GGGCACTTTGAAACTGCTTTGAACAGTGGTACATATCAATAGGGGTCAAT CATGTACCGAGATGGTAAATAGTGACGTTTGGGGCACTTTGAAACTGCTT TGAACAGTACACATCAACAGGGGTCAATGATGCCATCGTGTTTGTCGGGC CTCGTCTTCACACAGGAGGAGCCGGCGCCCGGAGCAGCGGAGAAGGCCCG TCGGCGGCGATCGTGGCCGCCGTTCTGCGCGCCGAGGAGTGCTGCAAACG CAGCTTGGCGCTGGCTGAGCAGTTGTCTGTGGAGCTTGAAAGAGCAAAGA TGCTGGCCGCATGCGAACAGGTGTGTGGAAGAAAAAGGGGACCATCAATA GGGGCCATTTGTGTTTTAGCTTTGCATTGATGCATTCCTAGATGCTACGA GCCAGACGAAGGTGTGTGTCCTGTCGTGCTCTTTTTGTTGGTGGGTACTA CTTTTTGGGGAACATCATATGGCCCGGGTTTGGGCACCGAGATGCCAGAA TCACAGGAATCTGTGGCGCCTTGCAGTAGGTCTTGTGTACTATTGGCACG AGTAAAGCTGACTGCCTTCATTCTGGAAGCAAAACGTTTGGCTTGCGACC TTACGTTCGACAACGCACTACATAGACGATGCTACCACCGCCGACACCAA AGCCCACCCCTGTTCCCCATTCCTGCTCTCGCCCATTGTTGAACAACCGA AAGCAGGTGGAGATGCCAGCGATCTCGGTCCTGGCTGGGATGGAGGTTTC AGGAGTGGTGTTCTTGCCGGAAAGGGTCACGCGATTTTCGGCGGCTTTGC AGCAGCACCTAGAAAGCCTCGAACGGACGGCGGTGGTGGCCGTGGGAGGC AGGCAGTTTAACCTGGCTTCTCCGGACCAGGTATGGGGGCAAACAAGGAT CAAGGCATTCCCAACCGCCCGAGACATTCGTAAGCGTAAGACGTTTTCTG CCACAACGTCGCGCCACCTCGCTGGCCCTCCGCAGCGTCAAAATGTCGTA ATACCTCGTACATCCTGTGCTTCTCTTCGAGAGTGACGACTACCTACATA CCTGAAAACACTGGGTGCGATCGCCTCTGTTTACATACCACCATCTTCAC GTACCGAAAGTGCTGTTTGCTGCCACAACCACCGACTGCCCCTGCCGCAG GTGGCCGACATCCTGTTCAACCACCTCAAGCTCCCATCTCCCCCCGTGAA GGTATGACATATAACTGTACGGTGGTTGGAAGTGGCTCTCAAGTACGAGG TGATGGCTTGCACTCAGGCGCTCCGCTCATTATATAGCTGACTAATTAGT TCCGATAAGTAATTATGATACTTCGAAGCACATCCACCGTCCACGGTTTT TGCCAGGCCGGGAGCTTGCACGCTTCCACTTCTGCCGAGGTGTTGGCAGG GTTGCAGGGAAAGCATGCCGTGGTCGCCCCTATCTTCGAGTTTCGCGGCG TGAACAAGTACAAGACCACGTGAGCGATCGGTGGTATGATGTGCGCCAAC GCAAACATGTTACACCGCACCCGTTGTCCGCCTTGCTAACCGTGTCTGTG AGCTTTTTTTGCCGTATCCTGGTTTCATCGCTACTTTACCTGTCCAAGAC TCGCGCGTCGTGCGTGCGTGCGAAATTTTTGGTTGCGTGTGCGGTTTGAA TGCTGCATACTTATAGTGCAGCCGACATTGGCTTGTTTTCACCATGCGGT GTTTCCATGGCTGCGCCTACCGGCCAGATTGGGGTGAACAATACAAAAAC GCGTGAGCGCGTACGGAGACGTCGACGACAGCACCAAACCGGCGTTGAAA TCATTAAAAAGCGTTTCGGTAGGTCGTATCGTCAGGCGTGCTGCTGTTGG TACTGCTGTTGCTGCCGCCGCTGCTGCTGCTGCTGCTGCTGCTGTTTCCG CCCTTCTTTGCGTTTCACGGGGTTAGGGAGTGCAGACTGCTGCCGCGAAA ACAGTTTATGGATTAAAGTGTAGAAGAAAGTACCTCGCTGGTTTTGGTGT TTTCACAAACCATGGCCTTTGGCCAACAATCCTCCGTCCCTCGCGACTGT TTGGATTTACTGCTCGCCTTCGTCTGTGTGTTGTTTGCTTGAACACATTA TTGTGCCACTGAAAGGTACGTGGACAAACTGGCCGAAAGAGCTCTTGGTG CTGCGGCAGCCGAGGGCGCCACCACGGCAAGCCAGATGGCCGAAGAAGGA GCCGTGAGGATTCACGCAGCATGGAACCAAACCTCCGCTAGAACTGGCCG CCTCAGCTGTTCGCGGCCTAACTTGCAGCAGGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17043:3..3536+

>mRNA_L-elsbetiae_contig17043.4722.1 ID=mRNA_L-elsbetiae_contig17043.4722.1|Name=mRNA_L-elsbetiae_contig17043.4722.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2256bp|location=Sequence derived from alignment at L-elsbetiae_contig17043:3..3536+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCTGCGAAGGAGAGGATAAAGAGGCCGCCGAGGCGGGAGGCTACCG
GCTTCCCCTCTCTTGCGAGGCCGCCTGCGAAGGAGAGGATAAAGAGGCCG
CCGAGGCGGGAGGCTACCGGCTTCCCCTCTCTTGCGAGGTGGGTTATAAT
GAGCGCTGGTTGGCGTTGGCGAAGCTAGTCGCCATATCCACCATAAAAGT
GGCGTTCAACGCACAGGTGGGTTATAATGAGCGCTGGTTGGCGTTGGCGA
AGCTAGTCGCCATATCCACCATAAAAGTGGCGTTCAACGCACAGGTGGCG
CTCATGCCATTGATCGCTTGGCGTAGACGGCCCGAATCTGGGGCTTTTAT
TGCCCGTGCTGCTGCTGCTGCTACCGCTGCTGCTGCTACCGCTGCTGCTG
CTGCTGCGGAAGGCAGCGGTGACAAGGAGAGCGGACGTAGCGGAGCTAGT
GATGGTTCGCAACAGCAGCCGGCCGACCAATACTCGACAGTTTCCGGATT
ATTTGATCCTCGCGTGGCTGCTTGGATGTCAGACACTGGTACCACAGACA
AGGGGCTGGAATTTGAGGCACTCTGTGTTTCCTGGCTCAAGCAGGAGGCA
GCACACGCAGGTGGCGCTCATGCCATTGATCGCTTGGCGTAGACGGCCCG
AATCTGGGGCTTTTATTGCCCGTGCTGCTGCTGCTGCTACCGCTGCTGCT
GCTACCGCTGCTGCTGCTGCTGCGGAAGGCAGCGGTGACAAGGAGAGCGG
ACGTAGCGGAGCTAGTGATGGTTCGCAACAGCAGCCGGCCGACCAATACT
CGACAGTTTCCGGATTATTTGATCCTCGCGTGGCTGCTTGGATGTCAGAC
ACTGGTACCACAGACAAGGGGCTGGAATTTGAGGCACTCTGTGTTTCCTG
GCTCAAGCAGGAGGCAGCACACGCAGGAGGAGCCGGCGCCCGGAGCAGCG
GAGAAGGCCCGTCGGCGGCGATCGTGGCCGCCGTTCTGCGCGCCGAGGAG
TGCTGCAAACGCAGCTTGGCGCTGGCTGAGCAGTTGTCTGTGGAGCTTGA
AAGAGCAAAGATGCTGGCCGCATGCGAACAGGAGGAGCCGGCGCCCGGAG
CAGCGGAGAAGGCCCGTCGGCGGCGATCGTGGCCGCCGTTCTGCGCGCCG
AGGAGTGCTGCAAACGCAGCTTGGCGCTGGCTGAGCAGTTGTCTGTGGAG
CTTGAAAGAGCAAAGATGCTGGCCGCATGCGAACAGCAGGTGGAGATGCC
AGCGATCTCGGTCCTGGCTGGGATGGAGGTTTCAGGAGTGGTGTTCTTGC
CGGAAAGGGTCACGCGATTTTCGGCGGCTTTGCAGCAGCACCTAGAAAGC
CTCGAACGGACGGCGGTGGTGGCCGTGGGAGGCAGGCAGTTTAACCTGGC
TTCTCCGGACCAGCAGGTGGAGATGCCAGCGATCTCGGTCCTGGCTGGGA
TGGAGGTTTCAGGAGTGGTGTTCTTGCCGGAAAGGGTCACGCGATTTTCG
GCGGCTTTGCAGCAGCACCTAGAAAGCCTCGAACGGACGGCGGTGGTGGC
CGTGGGAGGCAGGCAGTTTAACCTGGCTTCTCCGGACCAGGTGGCCGACA
TCCTGTTCAACCACCTCAAGCTCCCATCTCCCCCCGTGAAGGTGGCCGAC
ATCCTGTTCAACCACCTCAAGCTCCCATCTCCCCCCGTGAAGGCCGGGAG
CTTGCACGCTTCCACTTCTGCCGAGGTGTTGGCAGGGTTGCAGGGAAAGC
ATGCCGTGGTCGCCCCTATCTTCGAGTTTCGCGGCGTGAACAAGTACAAG
ACCACGCCGGGAGCTTGCACGCTTCCACTTCTGCCGAGGTGTTGGCAGGG
TTGCAGGGAAAGCATGCCGTGGTCGCCCCTATCTTCGAGTTTCGCGGCGT
GAACAAGTACAAGACCACGTACGTGGACAAACTGGCCGAAAGAGCTCTTG
GTGCTGCGGCAGCCGAGGGCGCCACCACGGCAAGCCAGATGGCCGAAGAA
GGAGCCGTGAGGATTCACGCAGCATGGAACCAAACCTCCGCTAGAACTGG
CCGCCTCAGCTGTTCGCGGCCTAACTTGCAGCAGGTGGTACGTGGACAAA
CTGGCCGAAAGAGCTCTTGGTGCTGCGGCAGCCGAGGGCGCCACCACGGC
AAGCCAGATGGCCGAAGAAGGAGCCGTGAGGATTCACGCAGCATGGAACC
AAACCTCCGCTAGAACTGGCCGCCTCAGCTGTTCGCGGCCTAACTTGCAG
CAGGTG
back to top