mRNA_L-elsbetiae_contig17.4684.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig17.4684.1 vs. uniprot
Match: A0A6H5L3S5_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3S5_9PHAE) HSP 1 Score: 456 bits (1174), Expect = 2.720e-131 Identity = 672/1401 (47.97%), Postives = 726/1401 (51.82%), Query Frame = 1
Query: 1570 MCREHAEPGWVDVVRIGGDEESRDA--GGSAVGXXXXXXXXXTSAFSAPPAAFSAEVGAGDGDADGGWWSGQDEGYSGGYEHERWQDGGXXXXXXXXXXXXXXXXXXXXXXXSYSNGTVVD-GHATAAAGEWGDSAASRAGGAGQGGRRSGVVAPGELMTSGRWVGRTKGVNDQCPHPNSKHYCHGKCKVCYMKEYNQRTRALGPAGRXXXXXXXXXXXXXXXXXXXXXTTGECSKLPAISYNHQARRGIKQNVSIFSLHDRVANHTDQTKGCADLSAELKSEGGDGXXXXXXXXXXXXXXXXIDGDVEHLDKNWRRVVSSCEHTDAAHYGKGFCRPCYM---------------REYNRAKRRGETVVRLNSPRPREPPSAADVAGAGGPAGSGAPRRGPSPVASSPLSGFGXXXXTKATRSSSSSFV----------------------PKIVALPPPVCAHCKQTERVWPSVLMCDGCEATYHLGCMALTSQPFGEWYCPRCTSFLLDSDSDVDDGQSFMQXXXXXXXXXXXXXXXXXXXXXXXXXX----ATATAXXXXXXXXXXTACEANVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAEMPTEGTEQTRGXXXXXXXXXXXXXTVMTTPGDGSISTPSGAGARTDAVPTAPSVATVVRRPRRWSLKGDVRGCRCPDCVSILLQNGGVRSTEASKLLVPSDARSMPAPTIPEELENAPAPRRRGGLGIKRRRPQRSPRDPYGQTEDRFRERETVPAPRRPGRPLGSTNKPKAVPAGGASGGGKHSTGKPVGRPKGSKNRVPVSAVATAAAQDFPASAGRVELGAAAGVERVALPTRRELEIDTADGXXXXXXXXXXXXXXXVASTSSGEGGRPGLRSTRGYNRRSRFRG-SDDEWSVGG-WGSDSXXXXXXXXXXXXXXNFRFGGDKVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGIAVKRRPGRPRKNENPVPPTGGRGGRGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRASPRATRKGLVTACEHSDRVLYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKRELREAAGRPHSSGTGSSEGMSSTGSPNAASAFPFGAAADTHDGGSTAHPTTAVAGAAAVESVRPAPAQAEAAAGGTGSEVFTRQLAGDWKEEDQPG---ATMLSAGASGATASPNAAQSTGGDGGENANGARSGGDRRAEARDKVKGAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRPNPAPVREYVFPPEMRMGY 5625
MCREHA PGWVDVVRIGG E G A+ + A VG ++D S H + G+ VD G GE D+ AS AG G GV PG L+ GR KGVNDQCPHPNSKHYCHGKCKVCYMKEYNQ+TR G A Q T G E EG G DK+WRR VSSCEH DA HYGKGFCRPCYM REYN+AKRRGE VVRLN PRP PS+ XXXX PK ALPPP+C CKQTER WPSVL+CDGCEAT+HLGC ++SQP GEWYCPRCTSFLLDSDS+ DD XXXXXXXXXXXXXXXXXXXXXXXXXX A T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXX XXXXXXXXXXXXX +TDA RR +RWSL+GDVRGCRCPDCVSILLQ GG R EAS LLV +ARS+PAP IPE E+ RRGGLG+KRRR +RSPRDPY EDR RERETVPAP+RPGRP GS NKPK PA G +G TG+PVGRPKGSKNRV S+ AA + S+GR E G + ++RVALP+RRELE+DT XXXXXXXXXXXXXXX R GLRSTRG+NRR RFRG SDDEWS GG W S XXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RKRASPR +RKG+VTACEH+DR LYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKREL+EAA R GSSEG+ S+G N ASAFP AD S A P+ A AA S+ + G G E R+ GD + Q G A + A G A G + R V G AA+ XXXXXXXXXX P PAPVREYVFPP++RMGY
Sbjct: 1 MCREHAGPGWVDVVRIGGGSEDNTTAVGDRAIDAPVRREETTGGMIDCRRCSVCAAVGRSGCNSD-----------SSSNNH-----------------------------INTGGGSNVDPGGPAVGGGEGSDARASAAGALG------GVTRPGRLL------GRPKGVNDQCPHPNSKHYCHGKCKVCYMKEYNQKTRMQGAAA--------------------------------------------QXXXXXXXXXXXXXXXRTTAG------EAVPEGQAGGTTIS-------------------DKHWRRTVSSCEHADAPHYGKGFCRPCYMVSGEGAKKDRGAFCGREYNKAKRRGENVVRLNCPRPEASPSSTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKTTALPPPICGRCKQTERSWPSVLVCDGCEATFHLGCAHMSSQPCGEWYCPRCTSFLLDSDSEADDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVALAAEATTASEKARTXXXXXXXXSRAVSEPAPEKSQGVEAPPAPGPSFDPAVEGSAGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEAGSVADAPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKTDAGG---------RRQKRWSLRGDVRGCRCPDCVSILLQTGGSRPPEASSLLVSEEARSLPAPKIPEGTEHGVVIPRRGGLGVKRRRQRRSPRDPYALKEDRLRERETVPAPKRPGRPPGSANKPK--PATGRTG-----TGRPVGRPKGSKNRVVASS--PAAIRYGFGSSGR-EGGDS--LQRVALPSRRELEVDTNXXXXXXXXXXXXXXXXXX---------RAGLRSTRGHNRR-RFRGGSDDEWSFGGGWASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGETVRKRASPRTSRKGVVTACEHTDRPLYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKRELQEAASRSEGGSVGSSEGLPSSGGVNNASAFPVSIPAD-----SAARPSGVAA--AATGSI----------SRGGGREAINRKATGDSENRPQQGIISAPLPRAAGPGLPA---------GXXXXXXXXXXXXXXXEDKTRQLVAGVAAAVXXXXXXXXXX--------------------PAPAPVREYVFPPDLRMGY 1178
BLAST of mRNA_L-elsbetiae_contig17.4684.1 vs. uniprot
Match: D7FSE7_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE7_ECTSI) HSP 1 Score: 367 bits (941), Expect = 3.050e-101 Identity = 534/948 (56.33%), Postives = 578/948 (60.97%), Query Frame = 1
Query: 2578 MREYNRAKRRGETVVRLNSPRPREPPSAADV---------------------------------AGAGGPAGSGAPRRGPSPVASSPLSGFGXXXXTKATRSSSSSFVPKIVALPPPVCAHCKQTERVWPSVLMCDGCEATYHLGCMALTSQPFGEWYCPRCTSFLLDSDSDVDDGQSFMQXXXXXXXXXXXXXXXXXXXXXXXXXXATATAXXXXXXXXXXTACEANVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAEMPTEGTEQTRGXXXXXXXXXXXXXTVMTTPGDGSISTPSGAGARTDAVPTAPSVATVVRRPRRWSLKGDVRGCRCPDCVSILLQNGGVRSTEASKLLVPSDARSMPAPTIPEELENAPAPRRRGGLGIKRRRPQRSPRDPYGQTEDRFRERETVPAPRRPGRPLGSTNKPKAVPAGGASGGGKHSTGKPVGRPKGSKNRVPVSAVATAAAQDFPASAGRVELGAAAGVERVALPTRRELEIDTADGXXXXXXXXXXXXXXXVASTSSGEGGRPGLRSTRGYNRRSRFRG-SDDEWSVGGWGSDSXXXXXXXXXXXXXXNFRFGGDKVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGIAVKRRPGRPRKNENPVPPTGGRGGRGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRASPRATRKGLVTACEHSDRVLYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKRELREAAGRPHSSGTGSSEGMSSTGSPNAASAFPFGAAADTHDGGSTAHPTTAVAGAAAVESVRPAPAQAEAAAGGTGSEVFTRQLAGDWKEEDQPG 5319
MREYNRAKRRGE VVRLN PRP PS+ + GG + +P S + XXXX R+S SFVPK ALPPP+C CKQTER WPSVL+CDGCEAT+HLGC ++SQPFGEWYCPRCTSFLLDSDS+ DD XXXXXXXXX A A++ XXXXXXXXX XXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXX RR +RWSL+GDVRGCRCPDCVSILLQ GG R EAS LLV +ARS+PAP IPE E+ RRGGLGIKRRR +RSPRDPY EDR RERETVPAP+RPGRP GS NKPK PA G +G TG+PVGRPKGSKNRV S+ AA + S+GR + ++RVALP+RRELE+DT XXXXXXXXXXXXXXX R GLRSTRG+NRR RFRG SD+EWS GG XXXXXXXXXXXXXX RFGGDKV XXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RKRASPR +RKG+VTACEH+DR LYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKREL+EAA R GSSEG+ S+ N ASAFP G AD S A P+ A AA S+ + G G E R+ GD + Q G
Sbjct: 1 MREYNRAKRRGENVVRLNHPRPEASPSSTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWPYSKTGG-------KLALAPTPPSVTAXXXXXXXXXXMRAS--SFVPKTTALPPPICGRCKQTERSWPSVLVCDGCEATFHLGCARMSSQPFGEWYCPRCTSFLLDSDSEADDAXXXXXXXXXXXXXXVSSTDQRP---------AEASSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVSEPAPEKPEGVEAPPAPGPSSDPAVEGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQKRWSLRGDVRGCRCPDCVSILLQAGGSRPPEASSLLVSEEARSLPAPKIPEGTEHGVVIPRRGGLGIKRRRQRRSPRDPYALKEDRLRERETVPAPKRPGRPPGS-NKPK--PATGRTG-----TGRPVGRPKGSKNRVVASS--PAAIRYGFGSSGRE---GSDSLQRVALPSRRELEVDTNXXXXXXXXXXXXXXXXXX---------RAGLRSTRGHNRR-RFRGGSDEEWSFGG-----XXXXXXXXXXXXXXXXRFGGDKVXXXXXXAGDVSDESYSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGETVRKRASPRTSRKGVVTACEHTDRPLYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKRELKEAASRSEGGSVGSSEGLPSSVGVNNASAFPVGTPAD-----SAARPSGVAA--AATGSI----------SSGGGREATNRKATGDSENRPQQG 870 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17.4684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig17.4684.1 >prot_L-elsbetiae_contig17.4684.1 ID=prot_L-elsbetiae_contig17.4684.1|Name=mRNA_L-elsbetiae_contig17.4684.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=2123bp MDAASREAVLSARSAVGASALAAAAALVAVSVSATMAPRINNNNNSSDTQback to top mRNA from alignment at L-elsbetiae_contig17:60692..76850- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig17.4684.1 ID=mRNA_L-elsbetiae_contig17.4684.1|Name=mRNA_L-elsbetiae_contig17.4684.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=16159bp|location=Sequence derived from alignment at L-elsbetiae_contig17:60692..76850- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig17:60692..76850- >mRNA_L-elsbetiae_contig17.4684.1 ID=mRNA_L-elsbetiae_contig17.4684.1|Name=mRNA_L-elsbetiae_contig17.4684.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=12738bp|location=Sequence derived from alignment at L-elsbetiae_contig17:60692..76850- (Laminarionema elsbetiae ELsaHSoW15)back to top |