prot_L-elsbetiae_contig17.4684.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig17.4684.1
Unique Nameprot_L-elsbetiae_contig17.4684.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length2123
Homology
BLAST of mRNA_L-elsbetiae_contig17.4684.1 vs. uniprot
Match: A0A6H5L3S5_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3S5_9PHAE)

HSP 1 Score: 456 bits (1174), Expect = 1.240e-131
Identity = 672/1401 (47.97%), Postives = 726/1401 (51.82%), Query Frame = 0
Query:  524 MCREHAEPGWVDVVRIGGDEESRDA--GGSAVGXXXXXXXXXTSAFSAPPAAFSAEVGAGDGDADGGWWSGQDEGYSGGYEHERWQDGGXXXXXXXXXXXXXXXXXXXXXXXSYSNGTVVD-GHATAAAGEWGDSAASRAGGAGQGGRRSGVVAPGELMTSGRWVGRTKGVNDQCPHPNSKHYCHGKCKVCYMKEYNQRTRALGPAGRXXXXXXXXXXXXXXXXXXXXXTTGECSKLPAISYNHQARRGIKQNVSIFSLHDRVANHTDQTKGCADLSAELKSEGGDGXXXXXXXXXXXXXXXXIDGDVEHLDKNWRRVVSSCEHTDAAHYGKGFCRPCYM---------------REYNRAKRRGETVVRLNSPRPREPPSAADVAGAGGPAGSGAPRRGPSPVASSPLSGFGXXXXTKATRSSSSSFV----------------------PKIVALPPPVCAHCKQTERVWPSVLMCDGCEATYHLGCMALTSQPFGEWYCPRCTSFLLDSDSDVDDGQSFMQXXXXXXXXXXXXXXXXXXXXXXXXXX----ATATAXXXXXXXXXXTACEANVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAEMPTEGTEQTRGXXXXXXXXXXXXXTVMTTPGDGSISTPSGAGARTDAVPTAPSVATVVRRPRRWSLKGDVRGCRCPDCVSILLQNGGVRSTEASKLLVPSDARSMPAPTIPEELENAPAPRRRGGLGIKRRRPQRSPRDPYGQTEDRFRERETVPAPRRPGRPLGSTNKPKAVPAGGASGGGKHSTGKPVGRPKGSKNRVPVSAVATAAAQDFPASAGRVELGAAAGVERVALPTRRELEIDTADGXXXXXXXXXXXXXXXVASTSSGEGGRPGLRSTRGYNRRSRFRG-SDDEWSVGG-WGSDSXXXXXXXXXXXXXXNFRFGGDKVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGIAVKRRPGRPRKNENPVPPTGGRGGRGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRASPRATRKGLVTACEHSDRVLYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKRELREAAGRPHSSGTGSSEGMSSTGSPNAASAFPFGAAADTHDGGSTAHPTTAVAGAAAVESVRPAPAQAEAAAGGTGSEVFTRQLAGDWKEEDQPG---ATMLSAGASGATASPNAAQSTGGDGGENANGARSGGDRRAEARDKVKGAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRPNPAPVREYVFPPEMRMGY 1875
            MCREHA PGWVDVVRIGG  E      G  A+                   +  A VG    ++D           S    H                              +   G+ VD G      GE  D+ AS AG  G      GV  PG L+      GR KGVNDQCPHPNSKHYCHGKCKVCYMKEYNQ+TR  G A                                             Q                 T G      E   EG  G                        DK+WRR VSSCEH DA HYGKGFCRPCYM               REYN+AKRRGE VVRLN PRP   PS+                               XXXX                                  PK  ALPPP+C  CKQTER WPSVL+CDGCEAT+HLGC  ++SQP GEWYCPRCTSFLLDSDS+ DD      XXXXXXXXXXXXXXXXXXXXXXXXXX        A          T                                            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              XXXX              XXXXXXXXXXXXX                   +TDA           RR +RWSL+GDVRGCRCPDCVSILLQ GG R  EAS LLV  +ARS+PAP IPE  E+     RRGGLG+KRRR +RSPRDPY   EDR RERETVPAP+RPGRP GS NKPK  PA G +G     TG+PVGRPKGSKNRV  S+   AA +    S+GR E G +  ++RVALP+RRELE+DT   XXXXXXXXXXXXXXX          R GLRSTRG+NRR RFRG SDDEWS GG W S  XXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       RKRASPR +RKG+VTACEH+DR LYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKREL+EAA R      GSSEG+ S+G  N ASAFP    AD     S A P+   A  AA  S+          + G G E   R+  GD +   Q G   A +  A   G  A         G                 + R  V G AA+ XXXXXXXXXX                    P PAPVREYVFPP++RMGY
Sbjct:    1 MCREHAGPGWVDVVRIGGGSEDNTTAVGDRAIDAPVRREETTGGMIDCRRCSVCAAVGRSGCNSD-----------SSSNNH-----------------------------INTGGGSNVDPGGPAVGGGEGSDARASAAGALG------GVTRPGRLL------GRPKGVNDQCPHPNSKHYCHGKCKVCYMKEYNQKTRMQGAAA--------------------------------------------QXXXXXXXXXXXXXXXRTTAG------EAVPEGQAGGTTIS-------------------DKHWRRTVSSCEHADAPHYGKGFCRPCYMVSGEGAKKDRGAFCGREYNKAKRRGENVVRLNCPRPEASPSSTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKTTALPPPICGRCKQTERSWPSVLVCDGCEATFHLGCAHMSSQPCGEWYCPRCTSFLLDSDSEADDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVALAAEATTASEKARTXXXXXXXXSRAVSEPAPEKSQGVEAPPAPGPSFDPAVEGSAGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEAGSVADAPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKTDAGG---------RRQKRWSLRGDVRGCRCPDCVSILLQTGGSRPPEASSLLVSEEARSLPAPKIPEGTEHGVVIPRRGGLGVKRRRQRRSPRDPYALKEDRLRERETVPAPKRPGRPPGSANKPK--PATGRTG-----TGRPVGRPKGSKNRVVASS--PAAIRYGFGSSGR-EGGDS--LQRVALPSRRELEVDTNXXXXXXXXXXXXXXXXXX---------RAGLRSTRGHNRR-RFRGGSDDEWSFGGGWASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGETVRKRASPRTSRKGVVTACEHTDRPLYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKRELQEAASRSEGGSVGSSEGLPSSGGVNNASAFPVSIPAD-----SAARPSGVAA--AATGSI----------SRGGGREAINRKATGDSENRPQQGIISAPLPRAAGPGLPA---------GXXXXXXXXXXXXXXXEDKTRQLVAGVAAAVXXXXXXXXXX--------------------PAPAPVREYVFPPDLRMGY 1178          
BLAST of mRNA_L-elsbetiae_contig17.4684.1 vs. uniprot
Match: D7FSE7_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE7_ECTSI)

HSP 1 Score: 367 bits (941), Expect = 2.470e-101
Identity = 534/948 (56.33%), Postives = 578/948 (60.97%), Query Frame = 0
Query:  860 MREYNRAKRRGETVVRLNSPRPREPPSAADV---------------------------------AGAGGPAGSGAPRRGPSPVASSPLSGFGXXXXTKATRSSSSSFVPKIVALPPPVCAHCKQTERVWPSVLMCDGCEATYHLGCMALTSQPFGEWYCPRCTSFLLDSDSDVDDGQSFMQXXXXXXXXXXXXXXXXXXXXXXXXXXATATAXXXXXXXXXXTACEANVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAEMPTEGTEQTRGXXXXXXXXXXXXXTVMTTPGDGSISTPSGAGARTDAVPTAPSVATVVRRPRRWSLKGDVRGCRCPDCVSILLQNGGVRSTEASKLLVPSDARSMPAPTIPEELENAPAPRRRGGLGIKRRRPQRSPRDPYGQTEDRFRERETVPAPRRPGRPLGSTNKPKAVPAGGASGGGKHSTGKPVGRPKGSKNRVPVSAVATAAAQDFPASAGRVELGAAAGVERVALPTRRELEIDTADGXXXXXXXXXXXXXXXVASTSSGEGGRPGLRSTRGYNRRSRFRG-SDDEWSVGGWGSDSXXXXXXXXXXXXXXNFRFGGDKVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGIAVKRRPGRPRKNENPVPPTGGRGGRGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRASPRATRKGLVTACEHSDRVLYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKRELREAAGRPHSSGTGSSEGMSSTGSPNAASAFPFGAAADTHDGGSTAHPTTAVAGAAAVESVRPAPAQAEAAAGGTGSEVFTRQLAGDWKEEDQPG 1773
            MREYNRAKRRGE VVRLN PRP   PS+                                    +  GG       +   +P   S  +   XXXX    R+S  SFVPK  ALPPP+C  CKQTER WPSVL+CDGCEAT+HLGC  ++SQPFGEWYCPRCTSFLLDSDS+ DD      XXXXXXXXX                 A A++ XXXXXXXXX         XXXXXXXXXXXXXXXX                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              XXXXXXXXXXXXX                                  RR +RWSL+GDVRGCRCPDCVSILLQ GG R  EAS LLV  +ARS+PAP IPE  E+     RRGGLGIKRRR +RSPRDPY   EDR RERETVPAP+RPGRP GS NKPK  PA G +G     TG+PVGRPKGSKNRV  S+   AA +    S+GR     +  ++RVALP+RRELE+DT   XXXXXXXXXXXXXXX          R GLRSTRG+NRR RFRG SD+EWS GG     XXXXXXXXXXXXXX  RFGGDKV XXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       RKRASPR +RKG+VTACEH+DR LYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKREL+EAA R      GSSEG+ S+   N ASAFP G  AD     S A P+   A  AA  S+          + G G E   R+  GD +   Q G
Sbjct:    1 MREYNRAKRRGENVVRLNHPRPEASPSSTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWPYSKTGG-------KLALAPTPPSVTAXXXXXXXXXXMRAS--SFVPKTTALPPPICGRCKQTERSWPSVLVCDGCEATFHLGCARMSSQPFGEWYCPRCTSFLLDSDSEADDAXXXXXXXXXXXXXXVSSTDQRP---------AEASSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVSEPAPEKPEGVEAPPAPGPSSDPAVEGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQKRWSLRGDVRGCRCPDCVSILLQAGGSRPPEASSLLVSEEARSLPAPKIPEGTEHGVVIPRRGGLGIKRRRQRRSPRDPYALKEDRLRERETVPAPKRPGRPPGS-NKPK--PATGRTG-----TGRPVGRPKGSKNRVVASS--PAAIRYGFGSSGRE---GSDSLQRVALPSRRELEVDTNXXXXXXXXXXXXXXXXXX---------RAGLRSTRGHNRR-RFRGGSDEEWSFGG-----XXXXXXXXXXXXXXXXRFGGDKVXXXXXXAGDVSDESYSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGETVRKRASPRTSRKGVVTACEHTDRPLYSRGQCKPCYMVAYWNRKHAELGIKPRKHRSSEWVEKKRELKEAASRSEGGSVGSSEGLPSSVGVNNASAFPVGTPAD-----SAARPSGVAA--AATGSI----------SSGGGREATNRKATGDSENRPQQG 870          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17.4684.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3S5_9PHAE1.240e-13147.97PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D7FSE7_ECTSI2.470e-10156.33PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 944..989
e-value: 2.0E-9
score: 47.3
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 1314..1326
e-value: 320.0
score: 1.1
coord: 164..176
e-value: 40.0
score: 6.2
coord: 1548..1560
e-value: 4.8
score: 11.4
coord: 1344..1356
e-value: 36.0
score: 6.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 942..992
e-value: 2.3E-10
score: 42.1
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 945..988
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 35..2122
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 31..34
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 942..991
score: 9.303
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 934..989

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17contigL-elsbetiae_contig17:61349..76850 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17.4684.1mRNA_L-elsbetiae_contig17.4684.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig17 60692..76850 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig17.4684.1 ID=prot_L-elsbetiae_contig17.4684.1|Name=mRNA_L-elsbetiae_contig17.4684.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=2123bp
MDAASREAVLSARSAVGASALAAAAALVAVSVSATMAPRINNNNNSSDTQ
NTRLSVPAAAPATTAGESDGEGGSLFPGPSPWPAEGWKGDGSGSDEDAHY
HSGGDGVGNTSRPFINGLSPRQHTRGYVDEHNHQGSVKREIGGGRKSSRG
VQGKAKRGRGGGQRGGRGRPALVSRTSWRPSCEHEWCSKNPSFGFPGRKG
QFCMKHQEEGMVNVSVSVRREKCQVQDCNKSPIKGLSQNGGYTPSFCQDH
RIPGRECRHPSGCTRLATHAPLPPRLPPQSPASGGDGSSPAAGAGAAGAA
GAGAAAAAGTAGGGGENPPEGGAEAAFVSVGGIGGAGDAGGGGSGGGSGG
AATPTSAAAATGNGNGGAAATAMVMDVDREEEEGADASAGPGGVSDDVPA
AEVPLVSNAAESSNGSGIGNGSGGGGGGSAPVAMDVDGDQTGGAGGGVGG
AEGAGVGAGASAAQGEEEDVEEDDVAAAARVLIGGMDREHPQQQQPRQPP
PPQQQPPQQQQQQQLLLQTQKPTMCREHAEPGWVDVVRIGGDEESRDAGG
SAVGGQRRTKRRRTSAFSAPPAAFSAEVGAGDGDADGGWWSGQDEGYSGG
YEHERWQDGGGSGAGNGIGNGGHEHCHYDYDYDSYSNGTVVDGHATAAAG
EWGDSAASRAGGAGQGGRRSGVVAPGELMTSGRWVGRTKGVNDQCPHPNS
KHYCHGKCKVCYMKEYNQRTRALGPAGRAGAGGGKGKRGRKAAASAAAAT
TGECSKLPAISYNHQARRGIKQNVSIFSLHDRVANHTDQTKGCADLSAEL
KSEGGDGGESGSGRGGGGGGGGGIDGDVEHLDKNWRRVVSSCEHTDAAHY
GKGFCRPCYMREYNRAKRRGETVVRLNSPRPREPPSAADVAGAGGPAGSG
APRRGPSPVASSPLSGFGGGAGTKATRSSSSSFVPKIVALPPPVCAHCKQ
TERVWPSVLMCDGCEATYHLGCMALTSQPFGEWYCPRCTSFLLDSDSDVD
DGQSFMQQQQRPAAAASSAAAASSSDLPPAAAAATATATTAPAAAAAATA
CEANVDAATADAATAGGVTADAATAGEATAGEATADVATAAAAAAASTVG
GSGGSGSTASAGVSSVGRVDGSSGDAATAADADASKAQSAGGSPSSSSPS
LSSPRAEMPTEGTEQTRGGGGATAAAAAAVVTVMTTPGDGSISTPSGAGA
RTDAVPTAPSVATVVRRPRRWSLKGDVRGCRCPDCVSILLQNGGVRSTEA
SKLLVPSDARSMPAPTIPEELENAPAPRRRGGLGIKRRRPQRSPRDPYGQ
TEDRFRERETVPAPRRPGRPLGSTNKPKAVPAGGASGGGKHSTGKPVGRP
KGSKNRVPVSAVATAAAQDFPASAGRVELGAAAGVERVALPTRRELEIDT
ADGGGGGGGWDYSSAGGGVASTSSGEGGRPGLRSTRGYNRRSRFRGSDDE
WSVGGWGSDSDGGDGGGGGGGDGMNFRFGGDKVRRRQRAAGENSDDSYSV
SDDGDSSSGGEGRRRRGSGRRRGGGGGGGGGGSAGGGSAGSGSGIAVKRR
PGRPRKNENPVPPTGGRGGRGRGRGGRGRGYSGRGGSSSKRPRVSEEGTG
EGESGEGEGESGDGRKRASPRATRKGLVTACEHSDRVLYSRGQCKPCYMV
AYWNRKHAELGIKPRKHRSSEWVEKKRELREAAGRPHSSGTGSSEGMSST
GSPNAASAFPFGAAADTHDGGSTAHPTTAVAGAAAVESVRPAPAQAEAAA
GGTGSEVFTRQLAGDWKEEDQPGATMLSAGASGATASPNAAQSTGGDGGE
NANGARSGGDRRAEARDKVKGAAASAAPVAPAAAAPAAPAVVVAAAAAAA
AAASKRPNPAPVREYVFPPEMRMGYRKPTASAASAATVAAVATVKPTSAT
LTSTPSFSSTVEPAAVEPAAVEPAAKPAPATPSPSPAPKPTVAPVSATPT
LPPAANPAEKPASAASSSPATATALSLSLSPAPVVAPCPAATPASSTPWT
RAVERSVEPPSVTRTPAPTPPPAPTTTEQHQREPSPPASSAPPAADTDTS
PLALAAGETETLRSSPPLAPAPAAEEAVAVCSSPPPPPPPTPLNPPPLAA
TPTQTTTGAAVAPADRTPGLEL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR017956AT_hook_DNA-bd_motif
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD