mRNA_L-elsbetiae_contig16883.4618.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16883.4618.1
Unique NamemRNA_L-elsbetiae_contig16883.4618.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16883.4618.1 vs. uniprot
Match: D7G088_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G088_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.320e-6
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:    4 GMWRRTHGFHWASLLLFSGVDKAAVADEVHR 96
            GMWRR+HGFHW SLL FSGVDKA VA++  R
Sbjct:  121 GMWRRSHGFHWESLLEFSGVDKADVAEQAAR 151
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BLAST of mRNA_L-elsbetiae_contig16883.4618.1 vs. uniprot
Match: D7G089_ECTSI (Similar to 3-Dehydroquinate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G089_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.770e-5
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = -2 
Query:  231 GASMAMTDPKSQSRALSLVGSVDWIQVRC 317
            GAS+ +TDPKSQSRALSLVGSVDWIQV C
Sbjct:  157 GASLEVTDPKSQSRALSLVGSVDWIQVTC 185
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16883.4618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G088_ECTSI2.320e-674.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G089_ECTSI1.770e-586.21Similar to 3-Dehydroquinate Synthase n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16883contigL-elsbetiae_contig16883:44..361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size319
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.5092304-UTR-L-elsbetiae_contig16883:43..491622815701.5092304-UTR-L-elsbetiae_contig16883:43..49Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16883 44..49 +
1691683047.0010312-UTR-L-elsbetiae_contig16883:43..491691683047.0010312-UTR-L-elsbetiae_contig16883:43..49Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16883 44..49 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.522845-CDS-L-elsbetiae_contig16883:49..3611622815701.522845-CDS-L-elsbetiae_contig16883:49..361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16883 50..361 +
1691683047.0106325-CDS-L-elsbetiae_contig16883:49..3611691683047.0106325-CDS-L-elsbetiae_contig16883:49..361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16883 50..361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16883.4618.1prot_L-elsbetiae_contig16883.4618.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16883 50..361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16883.4618.1

>prot_L-elsbetiae_contig16883.4618.1 ID=prot_L-elsbetiae_contig16883.4618.1|Name=mRNA_L-elsbetiae_contig16883.4618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MWRRTHGFHWASLLLFSGVDKAAVADEVHRYVLKFIGGVDVGMYGSTATW
PEPSPHRAKRYLADRQIKEAFLLLPHLTWIQSTEPTRDSALLWLLGSVIA
IDAP
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mRNA from alignment at L-elsbetiae_contig16883:44..361+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16883.4618.1 ID=mRNA_L-elsbetiae_contig16883.4618.1|Name=mRNA_L-elsbetiae_contig16883.4618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig16883:44..361+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGGCATGTGGAGACGGACTCACGGGTTCCACTGGGCATCCCTCCTTCT
TTTTTCGGGCGTGGACAAGGCTGCTGTCGCCGATGAGGTGCATAGATACG
TACTGAAGTTCATCGGCGGCGTGGATGTCGGCATGTATGGAAGCACCGCG
ACGTGGCCCGAACCGTCACCACACAGGGCCAAGAGATATCTGGCCGACCG
CCAAATAAAAGAGGCGTTCCTGTTGCTCCCGCACCTCACCTGGATCCAAT
CCACCGAACCGACGAGAGACAGCGCCCTGCTCTGGCTCTTGGGGTCAGTC
ATCGCCATCGATGCCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16883:44..361+

>mRNA_L-elsbetiae_contig16883.4618.1 ID=mRNA_L-elsbetiae_contig16883.4618.1|Name=mRNA_L-elsbetiae_contig16883.4618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig16883:44..361+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGAGACGGACTCACGGGTTCCACTGGGCATCCCTCCTTCTTTTTTC
GGGCGTGGACAAGGCTGCTGTCGCCGATGAGGTGCATAGATACGTACTGA
AGTTCATCGGCGGCGTGGATGTCGGCATGTATGGAAGCACCGCGACGTGG
CCCGAACCGTCACCACACAGGGCCAAGAGATATCTGGCCGACCGCCAAAT
AAAAGAGGCGTTCCTGTTGCTCCCGCACCTCACCTGGATCCAATCCACCG
AACCGACGAGAGACAGCGCCCTGCTCTGGCTCTTGGGGTCAGTCATCGCC
ATCGATGCCCCGATGTGGAGACGGACTCACGGGTTCCACTGGGCATCCCT
CCTTCTTTTTTCGGGCGTGGACAAGGCTGCTGTCGCCGATGAGGTGCATA
GATACGTACTGAAGTTCATCGGCGGCGTGGATGTCGGCATGTATGGAAGC
ACCGCGACGTGGCCCGAACCGTCACCACACAGGGCCAAGAGATATCTGGC
CGACCGCCAAATAAAAGAGGCGTTCCTGTTGCTCCCGCACCTCACCTGGA
TCCAATCCACCGAACCGACGAGAGACAGCGCCCTGCTCTGGCTCTTGGGG
TCAGTCATCGCCATCGATGCCCCG
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