mRNA_L-elsbetiae_contig16740.4551.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16740.4551.1
Unique NamemRNA_L-elsbetiae_contig16740.4551.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16740.4551.1 vs. uniprot
Match: D8LIJ3_ECTSI (DUF4149 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIJ3_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 1.940e-71
Identity = 125/167 (74.85%), Postives = 135/167 (80.84%), Query Frame = 1
Query:    1 RLALLWVRSVWFGTSVWVSFVAGIVLMRAINMDNFGLAQAKLFDAYFKFSLLCLAVAGFTAAALVSXXXXXXXXXXXXAKLSATPFLVALAVVVLNLVFFSPQTTITMMERRRVCRELGVDRTSANPQVRTLSKRFGMLHGITNLLNLVALACGCVHLCALAGRLSL 501
            R+A L   SVWFGTSVWVSF+AGIVLMRA+ M+ FGLAQAKLFDAYFKFSLLCLAVAGFT AAL S            + + ATPFLVA+A VV NLVFFSPQTTITMMER RVC+ELGVDR S +PQVR LSKRFGM HGI NL+NLVALACG VHLCALA RLSL
Sbjct:   42 RVAHLCSFSVWFGTSVWVSFIAGIVLMRAVTMETFGLAQAKLFDAYFKFSLLCLAVAGFTGAAL-SSSSSARSDGDDGSTVGATPFLVAVACVVANLVFFSPQTTITMMERSRVCKELGVDRKSPDPQVRKLSKRFGMFHGIANLINLVALACGAVHLCALAERLSL 207          
BLAST of mRNA_L-elsbetiae_contig16740.4551.1 vs. uniprot
Match: A0A7S4MCN5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MCN5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.820e-24
Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 1
Query:   25 SVWFGTSVWVSFVAGIVLMRAINMDNFGLAQAKLFDAYFKFSLLCLAVAGFTAAALVSXXXXXXXXXXXXAKLSATPFLVALAVVVLNLVFFSPQTTITMMERRRVCRELGV----------DRTSAN-PQVRTLSKRFGMLHGITNLLNLVALACGCVHL 474
            S WFG SVWVSFV+G+V+ R +    FG  Q++LF AYF++S + +AVA  TA AL                      LV +A V+LNL+F  P+TT  M +R  V + LG           D   AN P++R LSK+FGMLHGI++L NL AL  GCV L
Sbjct:   56 SSWFGCSVWVSFVSGLVMFRNLPRHVFGRLQSRLFPAYFQYSAVTVAVAILTAGAL---------------GWRTNVLLVVMATVLLNLLFLEPETTRIMYKRHAVEKRLGTGHEVGQLKPDDPVKANDPELRALSKKFGMLHGISSLTNLAALGFGCVWL 201          
BLAST of mRNA_L-elsbetiae_contig16740.4551.1 vs. uniprot
Match: A0A1E7FD76_9STRA (DUF4149 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FD76_9STRA)

HSP 1 Score: 105 bits (262), Expect = 5.900e-24
Identity = 78/170 (45.88%), Postives = 98/170 (57.65%), Query Frame = 1
Query:   25 SVWFGTSVWVSFVAGIVLMRAINMDNFGLAQAKLFDAYFKFSLLCLAVAGFTAAALVSXXXXXXXXXXXXAKLSATPFLVALAVVVLNLVFFSPQTTITMMERRRVCRELGV----------DRTSAN-PQVRTLSKRFGMLHGITNLLNLVALACGCVHLCALAGRLSL 501
            S WFG SVWVSF AGIV+ + +    FG  Q+KLF AYF FS   + +A  T+  L+S    XXXXXXXX        +V LA +++NL +F P TT  M +R  V + LG           D   AN PQ++ LSK FGMLHG++ LLNL AL  GCV L   A R+ L
Sbjct:   56 SSWFGCSVWVSFPAGIVMFKTLPRHTFGRLQSKLFPAYFLFSAGAIIIAIGTSGDLLSSTSNXXXXXXXXXXXIPYSLIVILACILINLFYFEPATTRVMYQRHAVEKRLGTGHEIGQLRPTDPKKANDPQLKALSKTFGMLHGVSTLLNLAALGFGCVWLSKCAERMVL 225          
BLAST of mRNA_L-elsbetiae_contig16740.4551.1 vs. uniprot
Match: A0A7R9VXI6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VXI6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.200e-23
Identity = 68/161 (42.24%), Postives = 92/161 (57.14%), Query Frame = 1
Query:   25 SVWFGTSVWVSFVAGIVLMRAINMDNFGLAQAKLFDAYFKFSLLCLAVAGFTAAALVSXXXXXXXXXXXXAKLSATPFLVALAVVVLNLVFFSPQTTITMMERRRVCRELGV----------DRTSAN-PQVRTLSKRFGMLHGITNLLNLVALACGCVHL 474
            S WFG SVWVSFVAG+V+ R +    FG  Q++LF  YF+FS L +AVA F+A A+                 +A   +  +  V+LNL+F  P+TT  M +R  V + LG           D   AN P++R LSK+FGMLHG+++L+NL AL  GCV L
Sbjct:   60 SSWFGCSVWVSFVAGLVMFRNLPRHVFGRLQSRLFPVYFRFSALNVAVAIFSAGAV---------------GWNAYGLVAVMGTVLLNLLFLEPETTRIMFKRHTVEKRLGTGHEVGQLKPDDLEKANDPELRALSKKFGMLHGMSSLMNLAALGFGCVWL 205          
BLAST of mRNA_L-elsbetiae_contig16740.4551.1 vs. uniprot
Match: A0A7S4ATM5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ATM5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 7.660e-22
Identity = 67/158 (42.41%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   25 SVWFGTSVWVSFVAGIVLMRAINMDNFGLAQAKLFDAYFKFSLLCLAVAGFTAAALVSXXXXXXXXXXXXAKLSATPFLVALAVVVLNLVFFSPQTTITMMERRRVCRELGV----------DRTSAN-PQVRTLSKRFGMLHGITNLLNLVALACGC 465
            S WFG SVWVSF+AGIV+ + +    FG  Q+KLF AYF FS   + VA  T++AL                L A      LA  +LNL++F P TT  M +R  V + LG           D   AN PQ++ LSK FGMLHG++ LLNL +L  GC
Sbjct:   55 SSWFGCSVWVSFIAGIVMFKTLPRHVFGRLQSKLFPAYFVFSAGAIVVAIATSSALTKSREEASSTNNIPYSLIAI-----LACTLLNLLYFEPATTKVMFQRHAVEKRLGTGHEIGKIRPDDPKKANDPQLKALSKTFGMLHGVSTLLNLGSLGFGC 207          
BLAST of mRNA_L-elsbetiae_contig16740.4551.1 vs. uniprot
Match: A0A0G4GGW2_9ALVE (DUF4149 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GGW2_9ALVE)

HSP 1 Score: 95.9 bits (237), Expect = 5.720e-20
Identity = 61/166 (36.75%), Postives = 85/166 (51.20%), Query Frame = 1
Query:   31 WFGTSVWVSFVAGIVLMRAINMDNFGLAQAKLFDAYFKFSLLCLAVAGFTAAALVSXXXXXXXXXXXXAKLSATPFLVALAVVVLNLVFFSPQTTITMMERRRVCRELGVDRT-----------SANPQVRTLSKRFGMLHGITNLLNLVALACGCVHLCALAGRL 495
            WFG SVWVSFVAG+V+  ++    FG  QAKLF  YF+FS+LC++V      AL               +      +    +++LNL++F P TT  M  R  V R LG               + +P++ +LS RFG LHG +  LNL+ L  GC H+C +  RL
Sbjct:  106 WFGCSVWVSFVAGLVMFYSLPRHVFGQLQAKLFPRYFQFSVLCISVC----LALEVCAAKFRGSSKCMPREQQMNLIAVWGILLLNLLYFEPVTTKVMFLRHAVERRLGTGHEVGQLRPWDPVKAKDPELVSLSARFGKLHGCSTSLNLLGLGLGCWHICWIGARL 267          
BLAST of mRNA_L-elsbetiae_contig16740.4551.1 vs. uniprot
Match: A0A7S1BIS9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIS9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 6.300e-19
Identity = 66/167 (39.52%), Postives = 87/167 (52.10%), Query Frame = 1
Query:   31 WFGTSVWVSFVAGIVLMRAINMDNFGLAQAKLFDAYFKFSLLCLAVAGFTAAALVSXXXXXXXXXXXXAKLSATPFLVALAVVVLNLVFFSPQTTITMMERRRVCRELGV----------DRTSAN-PQVRTLSKRFGMLHGITNLLNLVALACGCVHLCALAGRLS 498
            WFG SVWVS VAG+V  RA+    FG   A+LF  YF FS + +++A   A  L              A L+A      L  V  NL++  P+TT  M  R  V R LG           D   AN P++R L+K+FGMLHGI+ LLNL+A+  GCV    LA +++
Sbjct:   68 WFGCSVWVSCVAGLVTFRALPRHVFGRLMARLFPVYFNFSAVTVSLAAAAARGL----------GWPIAWLAAI-----LGTVAANLLYLEPETTRVMFLRHVVERRLGTGHEVGQLKPSDPAKANDPELRALTKKFGMLHGISTLLNLMAMGFGCVWFSILAQKIT 219          
BLAST of mRNA_L-elsbetiae_contig16740.4551.1 vs. uniprot
Match: A0A8J1W0M4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1W0M4_9DINO)

HSP 1 Score: 90.5 bits (223), Expect = 4.680e-18
Identity = 63/164 (38.41%), Postives = 85/164 (51.83%), Query Frame = 1
Query:   31 WFGTSVWVSFVAGIVLMRAINMDNFGLAQAKLFDAYFKFSLLCLAVAGFTAAALVSXXXXXXXXXXXXAKLSATP------FLVALAVVVLNLVFFSPQTTITMMERRRVCRELGV----------DRTSAN-PQVRTLSKRFGMLHGITNLLNLVALACGCVH 471
            WFG S+WVSFVAG+V+   +    FG  QAKLF  YF+FS++ ++      A L              AK  A P          + +++LNL++F P+TT  M ER +V  +LG           D   AN P++  LSKRFG LHGI+  LNL+AL  G  H
Sbjct:   87 WFGCSMWVSFVAGLVMFNNLPRHVFGRLQAKLFPRYFQFSVIFVS-----CALLPHLVPGSVLERTALAKTVALPQNQQFNLAAIIGILLLNLLYFEPRTTAVMFERHKVEVKLGTGHEIGQLKPSDPAKANDPELVALSKRFGKLHGISTSLNLIALCLGVWH 245          
BLAST of mRNA_L-elsbetiae_contig16740.4551.1 vs. uniprot
Match: A0A8J4RRE6_9ROSI (DUF4149 domain-containing protein n=4 Tax=Fagaceae TaxID=3503 RepID=A0A8J4RRE6_9ROSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.210e-15
Identity = 59/177 (33.33%), Postives = 94/177 (53.11%), Query Frame = 1
Query:    1 RLALLWVRSVWFGTSVWVSFVAGIVLMRAINMDNFGLAQAKLFDAYFKFSLLCLAVAGFTAAALVSXXXXXXXXXXXXAKLSATPFLVALAVVVLNLVFFSPQTTITMMERRRVCR------ELG----VDRTSANPQVRTLSKRFGMLHGITNLLNLVALACGCVHLCALAGRLSL 501
            +LA L   S  FGT++WV+F+AGI++ + +    FG  Q+K+F AYF    +C AV+  + A L               K      L A A  + NL+ FSP T   M +R  V R      E+G    V+    NP+++ ++K+FGM+HG+++L N+++     +H   LAG+L+L
Sbjct:   43 KLAHLLCYSTAFGTALWVTFIAGIIMFKNLPRHQFGSLQSKMFPAYFSMVGICCAVSVGSFAYL-----HPWKSSSTADKYQLGFLLSAFAFNLANLLVFSPMTIEMMKQRHEVERGSNIGDEVGWSKNVEVAKVNPKLKAMNKKFGMIHGLSSLANIMSFGSLAIHSWYLAGKLNL 214          
BLAST of mRNA_L-elsbetiae_contig16740.4551.1 vs. uniprot
Match: A0A8J1YZS9_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1YZS9_9DINO)

HSP 1 Score: 82.8 bits (203), Expect = 3.880e-15
Identity = 59/169 (34.91%), Postives = 83/169 (49.11%), Query Frame = 1
Query:   25 SVWFGTSVWVSFVAGIVLMRAINMDNFGLAQAKLFDAYFKFSLLCLAVAGFTAAALVSXXXXXXXXXXXXAKLSATPFLVA-LAVVVLNLVFFSPQTTITMMERRRVCRELGV----------DRTSAN-PQVRTLSKRFGMLHGITNLLNLVALACGCVHLCALAGRL 495
            + WFG S+WVSFVAG+V+   +    FG  QA LF  YF++S + +A       A+                 +    L+  LA+V+LNL+ F P+TT  M  R +V   LG           D   AN P++  LSK+FG LHG++  LNL+ L  G  H   L  R+
Sbjct:   97 ATWFGCSMWVSFVAGLVMFHNLPRHVFGRLQAALFPRYFQYSAIFVAACVLLDQAMPYVMPAARTSTSNQLGTTQLGNLIGILAIVLLNLLVFEPKTTAVMFARHKVEVRLGTGHEIGQLRPSDPEKANDPELVALSKKFGALHGVSTTLNLIGLCLGTWHCVWLGSRI 265          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16740.4551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIJ3_ECTSI1.940e-7174.85DUF4149 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S4MCN5_9STRA2.820e-2443.48Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1E7FD76_9STRA5.900e-2445.88DUF4149 domain-containing protein n=1 Tax=Fragilar... [more]
A0A7R9VXI6_9STRA1.200e-2342.24Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4ATM5_9STRA7.660e-2242.41Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A0G4GGW2_9ALVE5.720e-2036.75DUF4149 domain-containing protein n=1 Tax=Chromera... [more]
A0A7S1BIS9_9STRA6.300e-1939.52Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A8J1W0M4_9DINO4.680e-1838.41Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A8J4RRE6_9ROSI2.210e-1533.33DUF4149 domain-containing protein n=4 Tax=Fagaceae... [more]
A0A8J1YZS9_9DINO3.880e-1534.91Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16740contigL-elsbetiae_contig16740:1075..3077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue1.7e-46
Seed eggNOG ortholog2880.D8LIJ3
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Domain of unknown function (DUF4149)
EggNOG OGsKOG2886@1,KOG2886@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionDomain of unknown function DUF4149
Ec32 orthologEc-18_003430.1
Exons3
Model size765
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16740.4551.1prot_L-elsbetiae_contig16740.4551.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16740 1336..2999 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.949897-UTR-L-elsbetiae_contig16740:1074..13351622815695.949897-UTR-L-elsbetiae_contig16740:1074..1335Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16740 1075..1335 -
1691683043.5908234-UTR-L-elsbetiae_contig16740:1074..13351691683043.5908234-UTR-L-elsbetiae_contig16740:1074..1335Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16740 1075..1335 -
1622815695.9991899-UTR-L-elsbetiae_contig16740:2999..30771622815695.9991899-UTR-L-elsbetiae_contig16740:2999..3077Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16740 3000..3077 -
1691683043.639787-UTR-L-elsbetiae_contig16740:2999..30771691683043.639787-UTR-L-elsbetiae_contig16740:2999..3077Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16740 3000..3077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.9606326-CDS-L-elsbetiae_contig16740:1335..14551622815695.9606326-CDS-L-elsbetiae_contig16740:1335..1455Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16740 1336..1455 -
1691683043.6050458-CDS-L-elsbetiae_contig16740:1335..14551691683043.6050458-CDS-L-elsbetiae_contig16740:1335..1455Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16740 1336..1455 -
1622815695.9719598-CDS-L-elsbetiae_contig16740:2042..23311622815695.9719598-CDS-L-elsbetiae_contig16740:2042..2331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16740 2043..2331 -
1691683043.6161542-CDS-L-elsbetiae_contig16740:2042..23311691683043.6161542-CDS-L-elsbetiae_contig16740:2042..2331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16740 2043..2331 -
1622815695.9858801-CDS-L-elsbetiae_contig16740:2982..29991622815695.9858801-CDS-L-elsbetiae_contig16740:2982..2999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16740 2983..2999 -
1691683043.6278558-CDS-L-elsbetiae_contig16740:2982..29991691683043.6278558-CDS-L-elsbetiae_contig16740:2982..2999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16740 2983..2999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16740.4551.1

>prot_L-elsbetiae_contig16740.4551.1 ID=prot_L-elsbetiae_contig16740.4551.1|Name=mRNA_L-elsbetiae_contig16740.4551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
MRAINMDNFGLAQAKLFDAYFKFSLLCLAVAGFTAAALVSTSSGGGGGGD
GGAKLSATPFLVALAVVVLNLVFFSPQTTITMMERRRVCRELGVDRTSAN
PQVRTLSKRFGMLHGITNLLNLVALACGCVHLCALAGRLSL*
back to top

mRNA from alignment at L-elsbetiae_contig16740:1075..3077-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16740.4551.1 ID=mRNA_L-elsbetiae_contig16740.4551.1|Name=mRNA_L-elsbetiae_contig16740.4551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2003bp|location=Sequence derived from alignment at L-elsbetiae_contig16740:1075..3077- (Laminarionema elsbetiae ELsaHSoW15)
CGCCTCGCTCTGCTTTGGGTCCGCAGCGTTTGGTTCGGGACCAGCGTCTG GGTGTCGTTCGTCGCTGGAATCGTGCTCATGCGAGCCATCAACATGTAAG GATGTGAATGGAGGAGAGGGCAGAGCAAAGAATTGAAAGTGATTTGTAAC GTTCGAACCTTGGCACTCCCCTGGCCAATAGCTCTACTAAATAGGTAATT GCTGTGGGGTGATGGGTTAAATATTTTTGTTGAGGACCGGAAAAGCATGA GAGGAATCACAACAGCATGTTTTTTCGCGCTCATGGGACATCCGACGAGT AAATATCGAGCGTCTCACTCGTTTGAGGATTGTGAGAAAGTTAGCTACAT ATGGCGCCATCGGCTTGTATTTTAGCACGGATTGTGTGTCGGCATGCTGG GGCTCTCGTCCGAACCGGTGTTTACGTTCTCGCGATATTTTGCGTGCCGA GGACTTCCATTGTTCACTTGGAGAGTGCCATGTTGCGACCCCGCTCCGAT GATGGAGTCTTTGGAATGTCAGGCACCCGGGATCTTGTCCCCTCCTTCTC GCATGTTTTCTGCACGTCCCTGTCCCCCGCCCCTCGCCCTTTTACCTGTA CATAAATACCCATGTGCCACGTTTGAAACCGCCACGGGACCCCGACCGTC ATTCTCTCACCGCCACACCACGGACATCCTCCGTAACCACAACTGCTACT TACGTACTACCTGCATACCTGCTCCCGCTCACACCCATCACCCAAGGGAC AACTTTGGCCTGGCCCAAGCGAAGCTATTCGACGCATACTTCAAGTTCAG CCTGCTGTGCCTGGCCGTCGCCGGTTTCACGGCCGCGGCGCTGGTTTCGA CCTCGTCCGGCGGCGGCGGCGGCGGCGATGGCGGCGCAAAGCTAAGCGCG ACGCCCTTCCTCGTCGCCCTGGCGGTGGTCGTGCTGAACCTGGTGTTCTT CAGCCCTCAGACGACCATCACCATGATGGAGCGGCGGCGGGTGTGCAGGG AGTTGGGTGTGGACCGCACGTCGGCTAATCCGCAGGTACAGGACCCGAAA CGGGCGTGCGTGCGTGCGTGTGTGTGTTTGTGTTTTTCTCAGTTGTCATC GACCGCGCTAACCGGTTGATCAATTGAGAGATGCCGGCTGTAGCGGGTAA AGAACAAAAAGCGCTCTGCTTAGTGTCGGGACCCCCTCGGTGAGGGTATG ATATAGAAGTTCATGTACCTCGGGGGACTTCGAAAGGGTGGAGATTGAGC ATTGAGCGAAGGCACACTACTGTGCACGCCACTGAAGTGCATGTGTGTGT GACTTCGGGGCGCCGAGGGGCTTAGCCCTTGTTTCCTGACACCCATCGCC ACTTGAAAAAAATCCGGAGGGAGTAGATTCTCGCTTCAAGCTCGCGCTGA TGAGCATGAACGCTCTCCTCTTCCGAACTGTTTCAGGCAATTCACCCAGA GCGGAACGCCGAGACTGCACTCGGAAAAGGGCGTCGGTTCCTTTCGACTT CGGCGTGCCATATGGCTGCTCACCGTAAAGGAGTACCCCGCATGCATGTC TTGAACTGCTGTTGTGGTTTGCTTAAATCTCGCTAACGAACCGACGACGC CAATAACAAACAACCCGCGCAGGTCCGGACACTCTCGAAAAGATTCGGAA TGCTCCACGGGATCACCAACCTGCTCAACCTGGTAGCTCTGGCTTGTGGC TGCGTCCACCTCTGCGCGCTGGCGGGGCGGCTGAGCCTGTAGTTGGCGTC GTGGTGCTCTTCTTGCGCTCTGCTCGTTTTCGTCTCAAGGGCGGTTTTGC CCATCGGTTTACTGCTGTTGCTGTGGCGAAGAGGGAAATTGTTCCCCTCT TTTCTCCGTGTCTCGTTTAGGGCCTGCTTCTTCCTTTTGAAGCGCTTTCT GTATTGTTCGGATTCAATCTTTGCGTTTCCACATGGCGCGCGGCGTTCTA TGCAGTTGGTTCGCGTTGGAGCTCGGTCGTACCGCACCACGTTGGGGCAC CTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16740:1075..3077-

>mRNA_L-elsbetiae_contig16740.4551.1 ID=mRNA_L-elsbetiae_contig16740.4551.1|Name=mRNA_L-elsbetiae_contig16740.4551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig16740:1075..3077- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAGCCATCAACATATGCGAGCCATCAACATGGACAACTTTGGCCTG
GCCCAAGCGAAGCTATTCGACGCATACTTCAAGTTCAGCCTGCTGTGCCT
GGCCGTCGCCGGTTTCACGGCCGCGGCGCTGGTTTCGACCTCGTCCGGCG
GCGGCGGCGGCGGCGATGGCGGCGCAAAGCTAAGCGCGACGCCCTTCCTC
GTCGCCCTGGCGGTGGTCGTGCTGAACCTGGTGTTCTTCAGCCCTCAGAC
GACCATCACCATGATGGAGCGGCGGCGGGTGTGCAGGGAGTTGGGTGTGG
ACCGCACGTCGGCTAATCCGCAGGGACAACTTTGGCCTGGCCCAAGCGAA
GCTATTCGACGCATACTTCAAGTTCAGCCTGCTGTGCCTGGCCGTCGCCG
GTTTCACGGCCGCGGCGCTGGTTTCGACCTCGTCCGGCGGCGGCGGCGGC
GGCGATGGCGGCGCAAAGCTAAGCGCGACGCCCTTCCTCGTCGCCCTGGC
GGTGGTCGTGCTGAACCTGGTGTTCTTCAGCCCTCAGACGACCATCACCA
TGATGGAGCGGCGGCGGGTGTGCAGGGAGTTGGGTGTGGACCGCACGTCG
GCTAATCCGCAGGTCCGGACACTCTCGAAAAGATTCGGAATGCTCCACGG
GATCACCAACCTGCTCAACCTGGTAGCTCTGGCTTGTGGCTGCGTCCACC
TCTGCGCGCTGGCGGGGCGGCTGAGCCTGTAGGTCCGGACACTCTCGAAA
AGATTCGGAATGCTCCACGGGATCACCAACCTGCTCAACCTGGTAGCTCT
GGCTTGTGGCTGCGTCCACCTCTGCGCGCTGGCGGGGCGGCTGAGCCTGT
AG
back to top