mRNA_L-elsbetiae_contig16529.4425.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16529.4425.1
Unique NamemRNA_L-elsbetiae_contig16529.4425.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16529.4425.1 vs. uniprot
Match: A0A6H5KDM4_9PHAE (RNase_PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.680e-15
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 EVTIDGSKVEVHHTDDKEPLPLALHHVPICVTFAIFEV 114
            EVT+DGSKV VHHTDDKEP PLALHHVPICVTFAIFEV
Sbjct:  166 EVTVDGSKVVVHHTDDKEPHPLALHHVPICVTFAIFEV 203
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BLAST of mRNA_L-elsbetiae_contig16529.4425.1 vs. uniprot
Match: A0A8B8D2D4_CRAVI (Exosome complex component RRP45 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8D2D4_CRAVI)

HSP 1 Score: 58.9 bits (141), Expect = 4.640e-9
Identity = 22/37 (59.46%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 EVTIDGSKVEVHHTDDKEPLPLALHHVPICVTFAIFE 111
            +VT+DGS+V VH +D+K+P+PL++HH+PICVTF+ +E
Sbjct:  164 DVTVDGSEVIVHPSDEKDPIPLSVHHMPICVTFSFYE 200
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BLAST of mRNA_L-elsbetiae_contig16529.4425.1 vs. uniprot
Match: UPI00148A43C3 (exosome complex component RRP45 isoform X1 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A43C3)

HSP 1 Score: 58.9 bits (141), Expect = 4.640e-9
Identity = 22/37 (59.46%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 EVTIDGSKVEVHHTDDKEPLPLALHHVPICVTFAIFE 111
            +VT+DGS+V VH +D+K+P+PL++HH+PICVTF+ +E
Sbjct:  164 DVTVDGSEVIVHPSDEKDPIPLSVHHMPICVTFSFYE 200
[Close]
BLAST of mRNA_L-elsbetiae_contig16529.4425.1 vs. uniprot
Match: A0A8B8D643_CRAVI (Exosome complex component RRP45 n=7 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8D643_CRAVI)

HSP 1 Score: 58.9 bits (141), Expect = 4.650e-9
Identity = 22/37 (59.46%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 EVTIDGSKVEVHHTDDKEPLPLALHHVPICVTFAIFE 111
            +VT+DGS+V VH +D+K+P+PL++HH+PICVTF+ +E
Sbjct:  164 DVTVDGSEVIVHPSDEKDPIPLSVHHMPICVTFSFYE 200
[Close]
BLAST of mRNA_L-elsbetiae_contig16529.4425.1 vs. uniprot
Match: UPI00148AC116 (exosome complex component RRP45 isoform X2 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AC116)

HSP 1 Score: 58.9 bits (141), Expect = 4.650e-9
Identity = 22/37 (59.46%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 EVTIDGSKVEVHHTDDKEPLPLALHHVPICVTFAIFE 111
            +VT+DGS+V VH +D+K+P+PL++HH+PICVTF+ +E
Sbjct:  164 DVTVDGSEVIVHPSDEKDPIPLSVHHMPICVTFSFYE 200
[Close]
BLAST of mRNA_L-elsbetiae_contig16529.4425.1 vs. uniprot
Match: A0A1S3JT43_LINUN (Exosome complex component RRP45 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JT43_LINUN)

HSP 1 Score: 58.5 bits (140), Expect = 6.360e-9
Identity = 21/37 (56.76%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 EVTIDGSKVEVHHTDDKEPLPLALHHVPICVTFAIFE 111
            +VT+DG +V +H  +++EP+PL+LHH+PICVTFA +E
Sbjct:  164 DVTVDGEEVTIHKAEEREPIPLSLHHMPICVTFAFYE 200
[Close]
BLAST of mRNA_L-elsbetiae_contig16529.4425.1 vs. uniprot
Match: A0A835ZEC1_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.680e-8
Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 EVTIDGSK-VEVHHTDDKEPLPLALHHVPICVTFAIFE 111
            +VT+ G   VEVHH+D++E  PLALHHVP+C+TFA+F+
Sbjct:  170 DVTVSGEGFVEVHHSDEREAQPLALHHVPLCITFALFD 207
[Close]
BLAST of mRNA_L-elsbetiae_contig16529.4425.1 vs. uniprot
Match: A0A210QR03_MIZYE (Exosome complex component RRP45 n=3 Tax=Pectinidae TaxID=6566 RepID=A0A210QR03_MIZYE)

HSP 1 Score: 55.1 bits (131), Expect = 1.060e-7
Identity = 20/37 (54.05%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 EVTIDGSKVEVHHTDDKEPLPLALHHVPICVTFAIFE 111
            +VT+DGS V VH  ++K+P+PL++HH+PICV+F+ +E
Sbjct:  119 DVTVDGSNVIVHPVEEKDPIPLSVHHMPICVSFSFYE 155
[Close]
BLAST of mRNA_L-elsbetiae_contig16529.4425.1 vs. uniprot
Match: A0A812D0V0_SEPPH (Exosome complex component RRP45 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812D0V0_SEPPH)

HSP 1 Score: 54.7 bits (130), Expect = 1.450e-7
Identity = 20/37 (54.05%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 EVTIDGSKVEVHHTDDKEPLPLALHHVPICVTFAIFE 111
            +VT+   +V VH  D+KEP+PL+LHH+P+CV+FA F+
Sbjct:  164 DVTVSAEEVTVHPVDEKEPIPLSLHHMPVCVSFAFFQ 200
[Close]
BLAST of mRNA_L-elsbetiae_contig16529.4425.1 vs. uniprot
Match: A0A7S1I9Y2_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I9Y2_9EUGL)

HSP 1 Score: 54.7 bits (130), Expect = 1.450e-7
Identity = 19/36 (52.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    4 VTIDGSKVEVHHTDDKEPLPLALHHVPICVTFAIFE 111
            +TIDG +V VH ++ +EP+PL++HHVP+CVT+ +F+
Sbjct:  164 ITIDGDRVIVHSSEAREPVPLSIHHVPVCVTYGLFD 199
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16529.4425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDM4_9PHAE2.680e-1592.11RNase_PH domain-containing protein n=1 Tax=Ectocar... [more]
A0A8B8D2D4_CRAVI4.640e-959.46Exosome complex component RRP45 n=1 Tax=Crassostre... [more]
UPI00148A43C34.640e-959.46exosome complex component RRP45 isoform X1 n=1 Tax... [more]
A0A8B8D643_CRAVI4.650e-959.46Exosome complex component RRP45 n=7 Tax=Crassostre... [more]
UPI00148AC1164.650e-959.46exosome complex component RRP45 isoform X2 n=1 Tax... [more]
A0A1S3JT43_LINUN6.360e-956.76Exosome complex component RRP45 n=2 Tax=Lingula un... [more]
A0A835ZEC1_9STRA5.680e-860.53Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A210QR03_MIZYE1.060e-754.05Exosome complex component RRP45 n=3 Tax=Pectinidae... [more]
A0A812D0V0_SEPPH1.450e-754.05Exosome complex component RRP45 n=1 Tax=Sepia phar... [more]
A0A7S1I9Y2_9EUGL1.450e-752.78Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16529contigL-elsbetiae_contig16529:3363..3479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRrp45 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-17_001830.2
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815685.0252979-CDS-L-elsbetiae_contig16529:3362..34791622815685.0252979-CDS-L-elsbetiae_contig16529:3362..3479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16529 3363..3479 -
1691683036.7563753-CDS-L-elsbetiae_contig16529:3362..34791691683036.7563753-CDS-L-elsbetiae_contig16529:3362..3479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16529 3363..3479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16529.4425.1prot_L-elsbetiae_contig16529.4425.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16529 3363..3479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16529.4425.1

>prot_L-elsbetiae_contig16529.4425.1 ID=prot_L-elsbetiae_contig16529.4425.1|Name=mRNA_L-elsbetiae_contig16529.4425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=39bp
EVTIDGSKVEVHHTDDKEPLPLALHHVPICVTFAIFEV*
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mRNA from alignment at L-elsbetiae_contig16529:3363..3479-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16529.4425.1 ID=mRNA_L-elsbetiae_contig16529.4425.1|Name=mRNA_L-elsbetiae_contig16529.4425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=117bp|location=Sequence derived from alignment at L-elsbetiae_contig16529:3363..3479- (Laminarionema elsbetiae ELsaHSoW15)
GAGGTGACGATCGACGGGTCCAAGGTGGAGGTGCACCACACAGACGACAA
GGAACCGCTCCCCCTCGCCCTGCACCACGTTCCGATCTGCGTCACGTTCG
CGATATTCGAGGTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16529:3363..3479-

>mRNA_L-elsbetiae_contig16529.4425.1 ID=mRNA_L-elsbetiae_contig16529.4425.1|Name=mRNA_L-elsbetiae_contig16529.4425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig16529:3363..3479- (Laminarionema elsbetiae ELsaHSoW15)
GAGGTGACGATCGACGGGTCCAAGGTGGAGGTGCACCACACAGACGACAA
GGAACCGCTCCCCCTCGCCCTGCACCACGTTCCGATCTGCGTCACGTTCG
CGATATTCGAGGTGTGAGAGGTGACGATCGACGGGTCCAAGGTGGAGGTG
CACCACACAGACGACAAGGAACCGCTCCCCCTCGCCCTGCACCACGTTCC
GATCTGCGTCACGTTCGCGATATTCGAGGTGTGA
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