mRNA_L-elsbetiae_contig16527.4424.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig16527.4424.1 vs. uniprot
Match: A0A6H5JR21_9PHAE (Lipoyl-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR21_9PHAE) HSP 1 Score: 214 bits (545), Expect = 3.890e-66 Identity = 106/136 (77.94%), Postives = 124/136 (91.18%), Query Frame = 1 Query: 1 VEVGKPLCAIDGDEAAVVKAKVQAQQDEEDANAPPPEVKKPSLEDAMAGAFMAGANFVPPKKQAHKPMIKFLGKRSILREQQKDAEQQEIPGRHRHSPGALDFGQIVGGAMFGRPAMSEAEMEAVDSGGAESAPEL 408 VEVGKPLC IDGDEA+VVKA+VQAQQDEEDANAPPPE+KKPSLEDAMA AFMAGA+FV P+K++HKP+IKF+GKR++L E++ E+ +P RHRHSPGALDF QIVGGAMFGRPAMSE EMEAVDSGGAE+AP++ Sbjct: 155 VEVGKPLCTIDGDEASVVKARVQAQQDEEDANAPPPELKKPSLEDAMAEAFMAGADFVAPRKKSHKPLIKFVGKRALLTEKKDKKEKDGLPARHRHSPGALDFSQIVGGAMFGRPAMSEEEMEAVDSGGAEAAPQV 290
BLAST of mRNA_L-elsbetiae_contig16527.4424.1 vs. uniprot
Match: A0A835ZF23_9STRA (Single hybrid motif-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF23_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 4.460e-12 Identity = 57/151 (37.75%), Postives = 79/151 (52.32%), Query Frame = 1 Query: 1 VEVGKPLCAIDGDEAAVVKAKVQAQQDEEDANAPPPEVKKPSLEDAMAGAFMAGANFVPPKKQAHKPMIKFLGKRSILREQQKDAE---------------QQEIPGRH--RHSPGALDFGQIVGGAMFGRPAMSEAEMEAVDSGGAESAP 402 V+VG PLC +D EAA KA+ P +DA A ++GA + + + H P+IKF+GKRS +++ +A + + G R PGALDF QIVGGA+ GRPA+S+ EM+AV+SGGA AP Sbjct: 136 VQVGAPLCTLD--EAAAPKAEAPXXXXXXXXXRPE--------DDATLAAHISGA-VLEEQPRRHVPLIKFVGKRSKEKQEAPEASPAXXXXXXXXXXXASKPALRGTSGVRVVPGALDFEQIVGGALVGRPALSQEEMDAVESGGASVAP 275
BLAST of mRNA_L-elsbetiae_contig16527.4424.1 vs. uniprot
Match: A0A7S2WGR8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGR8_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.490e-7 Identity = 37/86 (43.02%), Postives = 46/86 (53.49%), Query Frame = 1 Query: 172 VPPKKQAHKPMIKFLGKRSILREQQKDAEQQE--------IPG-----RHRHSPGALDFGQIVGGAMFGRPAMSEAEMEAVDSGGA 390 V P A P I FLGK R + A+ E +P H+PGA+D + GGAMFGRP +SEAEMEAV++GGA Sbjct: 29 VAPPSSARVPSICFLGKEGWARRKHGKADIVESRSSVAMPVPSSLLAEEINHTPGAVDQWTLAGGAMFGRPPISEAEMEAVETGGA 114
BLAST of mRNA_L-elsbetiae_contig16527.4424.1 vs. uniprot
Match: A0A7S2WFW0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFW0_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 8.550e-7 Identity = 51/133 (38.35%), Postives = 65/133 (48.87%), Query Frame = 1 Query: 37 DEAAVVKAKVQAQQDEEDANAPP--PEVKKPSLEDAMAGAFMAGANFVPPKKQAHKPMIKFLGKRSILREQQKDAEQQE--------IPG-----RHRHSPGALDFGQIVGGAMFGRPAMSEAEMEAVDSGGA 390 DE AVV A + + D +A P P KP DA + +A P A P I FLGK R + A+ E +P H+PGA+D + GGAMFGRP +SEAEMEAV++GGA Sbjct: 98 DETAVVGANLFKLDTDADISAAPAAPAEAKP---DATYSSSVA------PPSSARVPSICFLGKEGWARRKHGKADIVESRSSVAMPVPSSLLAEEINHTPGAVDQWTLAGGAMFGRPPISEAEMEAVETGGA 221
BLAST of mRNA_L-elsbetiae_contig16527.4424.1 vs. uniprot
Match: A0A7S4QSX6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QSX6_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 2.350e-5 Identity = 45/146 (30.82%), Postives = 72/146 (49.32%), Query Frame = 1 Query: 1 VEVGKPLCAIDGDEAAVVKAKVQAQQDEEDANAPPPEVKKPSLEDAMAGAFMAGANFVPPKKQAHKPMIKFLGKRSILREQQKDAEQQEIPG-RHRHSPGALDFGQIVGGA----MFGRPAMSEAEMEAVDSGGAESAPELRYIDG 423 VEVG L ID + V + E+ +P P+ + +E+ + G++ P + P I FLGK ++ + E G + + +PG D I+ G+ M+GRPA SEAEMEA+ +GGA AP+++ + G Sbjct: 64 VEVGADLYKIDTEATPTVSGSYEISPQED--TSPHPKTEATEVEEEVVGSYTVTDTPTPVRV----PSIHFLGKDGWAA-RRNNVEPPAFTGVKVKRTPGGPDI--ILDGSGLTPMYGRPAFSEAEMEALITGGASQAPKVKKLSG 200
BLAST of mRNA_L-elsbetiae_contig16527.4424.1 vs. uniprot
Match: A0A4D9D5P5_9STRA (Lipoyl-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5P5_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 3.060e-5 Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 1 Query: 190 AHK-PMIKFLGKRSILREQQKDAE---------QQEIPGRH---RHSPGALDFGQIVGGAMFGRPAMSEAEMEAVDSGGA 390 AH+ P+IKFLGKRS++R+Q A+ +P RH R +PG F ++ FG P ++E EMEAV+SGGA Sbjct: 122 AHRTPLIKFLGKRSLMRKQDSSAQXXXXXXXARSPSLPARHEDSRSTPGVKTFIELP--PRFGHPPVTEEEMEAVESGGA 199
BLAST of mRNA_L-elsbetiae_contig16527.4424.1 vs. uniprot
Match: A0A7S4QTR8_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QTR8_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 3.740e-5 Identity = 45/146 (30.82%), Postives = 72/146 (49.32%), Query Frame = 1 Query: 1 VEVGKPLCAIDGDEAAVVKAKVQAQQDEEDANAPPPEVKKPSLEDAMAGAFMAGANFVPPKKQAHKPMIKFLGKRSILREQQKDAEQQEIPG-RHRHSPGALDFGQIVGGA----MFGRPAMSEAEMEAVDSGGAESAPELRYIDG 423 VEVG L ID + V + E+ +P P+ + +E+ + G++ P + P I FLGK ++ + E G + + +PG D I+ G+ M+GRPA SEAEMEA+ +GGA AP+++ + G Sbjct: 125 VEVGADLYKIDTEATPTVSGSYEISPQED--TSPHPKTEATEVEEEVVGSYTVTDTPTPVRV----PSIHFLGKDGWAA-RRNNVEPPAFTGVKVKRTPGGPDI--ILDGSGLTPMYGRPAFSEAEMEALITGGASQAPKVKKLSG 261 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16527.4424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig16527.4424.1 >prot_L-elsbetiae_contig16527.4424.1 ID=prot_L-elsbetiae_contig16527.4424.1|Name=mRNA_L-elsbetiae_contig16527.4424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp MAGAFMAGANFVPPKKQAHKPMIKFLGKRSILREQQKDAEQQEIPGRHRHback to top mRNA from alignment at L-elsbetiae_contig16527:751..3672+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig16527.4424.1 ID=mRNA_L-elsbetiae_contig16527.4424.1|Name=mRNA_L-elsbetiae_contig16527.4424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2922bp|location=Sequence derived from alignment at L-elsbetiae_contig16527:751..3672+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig16527:751..3672+ >mRNA_L-elsbetiae_contig16527.4424.1 ID=mRNA_L-elsbetiae_contig16527.4424.1|Name=mRNA_L-elsbetiae_contig16527.4424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig16527:751..3672+ (Laminarionema elsbetiae ELsaHSoW15)back to top |