mRNA_L-elsbetiae_contig1650.4410.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1650.4410.1
Unique NamemRNA_L-elsbetiae_contig1650.4410.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1650.4410.1 vs. uniprot
Match: D8LF53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF53_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 3.410e-74
Identity = 120/158 (75.95%), Postives = 133/158 (84.18%), Query Frame = 1
Query:  316 MNHCTAGAGAAALARPFMPGRGRGSARPRGGPPMLWALLSATGLVVATSTKSAVSQL-LASEEGTNGEEGGADAGNKVATAMVSFIKAYKKELSPLIPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDRPQWPPPGWFAGEKW 786
            MNHCT G G AALARPF P RG+GSA+PRG PP LW L  A G+V   S +SAVS+L LAS++G   ++GG  A NKV  AM+SFIKAYKKELSPLIPPACRFLPTCSVYGV+AIEKFGPTKGAVLTAWRLMRCNPFAGYG+D PQWPPPGWFAGE+W
Sbjct:    1 MNHCTPG-GVAALARPFWPDRGQGSAQPRGSPPALWTLACAAGVVAVASARSAVSRLVLASDDGE--QDGGGAAVNKVGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGERW 155          
BLAST of mRNA_L-elsbetiae_contig1650.4410.1 vs. uniprot
Match: A0A835ZNH9_9STRA (Hemolytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNH9_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.410e-33
Identity = 55/78 (70.51%), Postives = 64/78 (82.05%), Query Frame = 1
Query:  544 VATAMVSFIKAYKKELSPLIPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDRPQWPPPGWFAG 777
            +  AM+ FIKAYK+E+SPL+PPACRF PTCSVY VE+IE+FG  +G VLTAWRL+RC P  GYG D PQWPPP WFAG
Sbjct:   64 IKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAG 141          
BLAST of mRNA_L-elsbetiae_contig1650.4410.1 vs. uniprot
Match: A0A4D9DFE3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFE3_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.590e-29
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  556 MVSFIKAYKKELSPLIPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDRPQWPPPGWFAG 777
            +++F + YK+ +SPL+P ACRF PTCS Y +E+++KFGP KGAVLTAWRL+RCNP  G G D PQWPPPGW AG
Sbjct:   68 LINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 141          
BLAST of mRNA_L-elsbetiae_contig1650.4410.1 vs. uniprot
Match: A0A7S1U9Q3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9Q3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.050e-28
Identity = 47/80 (58.75%), Postives = 65/80 (81.25%), Query Frame = 1
Query:  538 NKVATAMVSFIKAYKKELSPLIPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDRPQWPPPGWFAG 777
            ++++ A++  ++ YK+E+SP + PACRFLPTCS Y +++I+ +GP KG VLTAWR++RCNPF G G D PQWPPPGWFAG
Sbjct:   69 SELSRALMGAVRWYKREISPSMAPACRFLPTCSGYSIDSIKTYGPWKGLVLTAWRILRCNPFGGSGYDPPQWPPPGWFAG 148          
BLAST of mRNA_L-elsbetiae_contig1650.4410.1 vs. uniprot
Match: W7TML8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TML8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.330e-28
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  556 MVSFIKAYKKELSPLIPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDRPQWPPPGWFAG 777
            +++F + YK+ +SPL+P ACRF PTCS Y +E+++KFGP KGAVLTAWRL+RCNP  G G D PQWPPPGW AG
Sbjct:  166 LINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 239          
BLAST of mRNA_L-elsbetiae_contig1650.4410.1 vs. uniprot
Match: A0A7S2R8H5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R8H5_9STRA)

HSP 1 Score: 118 bits (296), Expect = 9.220e-28
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  538 NKVATAMVSFIKAYKKELSPLIPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDRPQWPP 759
            N V+  MV+ I  YK  +SPL+PPACRFLPTCS YGV+AIE+FGP+KG VLTAWRL+RC+PF G G D P+WPP
Sbjct:   61 NPVSIGMVATIGVYKNVISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVVLTAWRLLRCSPFGGKGYDPPKWPP 134          
BLAST of mRNA_L-elsbetiae_contig1650.4410.1 vs. uniprot
Match: A0A7S0QB70_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QB70_9EUKA)

HSP 1 Score: 119 bits (297), Expect = 2.840e-27
Identity = 52/99 (52.53%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  487 LASEEGTNGEEGGADAGNKVATAMVSFIKAYKKELSPLIPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDRPQWPPPGWFAGEK 783
            LA   G N E         V    V  +K YK+ LSPL+PP CRF+PTCS Y +++ E+F P + AVLT WRL+RCNP AGYG+D PQWPPPG++AG +
Sbjct:   18 LARYTGFNSERERQQPAGAVTEWAVGALKWYKRALSPLLPPGCRFVPTCSEYAIQSFEQFSPVQAAVLTVWRLVRCNPTAGYGVDAPQWPPPGYWAGSQ 116          
BLAST of mRNA_L-elsbetiae_contig1650.4410.1 vs. uniprot
Match: B8BR73_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR73_THAPS)

HSP 1 Score: 113 bits (283), Expect = 9.310e-27
Identity = 47/78 (60.26%), Postives = 63/78 (80.77%), Query Frame = 1
Query:  544 VATAMVSFIKAYKKELSPLIPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDRPQWPPPGWFAG 777
            ++++M++ I  YK+ +SPL+PPACRFLPTCS YGV+AIE+FGP+KG +LTAWRL RC+PF G G D P+WPP  +  G
Sbjct:    1 MSSSMINAIGFYKQWISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVLLTAWRLARCSPFGGRGYDPPKWPPVAYNYG 78          
BLAST of mRNA_L-elsbetiae_contig1650.4410.1 vs. uniprot
Match: A0A7S2ENE8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ENE8_TRICV)

HSP 1 Score: 118 bits (295), Expect = 2.220e-26
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 1
Query:  496 EEGTNGEEGGADAGNKVATAMVSFIKAYKKELSPLIPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDRPQWPP 759
            + G      G +    ++ +MVS I  YK+ +SPL+PPACRF+PTCS YGV+AI++FGPTKGA+LTAWRLMRC+PF G G D P+WPP
Sbjct:  154 DRGVPERSAGGNGDGAMSASMVSAIGFYKQFISPLLPPACRFVPTCSQYGVQAIQEFGPTKGAMLTAWRLMRCSPFGGKGYDPPRWPP 241          
BLAST of mRNA_L-elsbetiae_contig1650.4410.1 vs. uniprot
Match: A0A7S1XBZ4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XBZ4_9RHOD)

HSP 1 Score: 111 bits (278), Expect = 1.340e-25
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  544 VATAMVSFIKAYKKELSPLIPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGIDRPQWPPPGWFAG 777
            ++  M++ ++ YK+++SPL+PP CRFLP+CS Y +EAI++FGP KG VLTAWR++RCNPF G G D PQWPP  + +G
Sbjct:   38 LSVVMLTALRWYKEQISPLMPPNCRFLPSCSSYSIEAIQEFGPAKGLVLTAWRILRCNPFGGAGYDPPQWPPVHFRSG 115          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1650.4410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF53_ECTSI3.410e-7475.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZNH9_9STRA1.410e-3370.51Hemolytic domain-containing protein n=1 Tax=Tribon... [more]
A0A4D9DFE3_9STRA1.590e-2964.86Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1U9Q3_9STRA1.050e-2858.75Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
W7TML8_9STRA2.330e-2864.86Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2R8H5_9STRA9.220e-2867.57Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S0QB70_9EUKA2.840e-2752.53Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
B8BR73_THAPS9.310e-2760.26Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2ENE8_TRICV2.220e-2657.95Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1XBZ4_9RHOD1.340e-2556.41Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1650contigL-elsbetiae_contig1650:19699..21434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.9
Seed ortholog evalue8.7e-63
Seed eggNOG ortholog2880.D8LF53
KEGG koko:K08998
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Haemolytic
EggNOG OGs2S1FR@2759,COG0759@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size1736
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1650.4410.1prot_L-elsbetiae_contig1650.4410.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1650 19834..20487 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.8474863-UTR-L-elsbetiae_contig1650:19698..198331622815683.8474863-UTR-L-elsbetiae_contig1650:19698..19833Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1650 19699..19833 +
1691683036.0936427-UTR-L-elsbetiae_contig1650:19698..198331691683036.0936427-UTR-L-elsbetiae_contig1650:19698..19833Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1650 19699..19833 +
1622815683.8709824-UTR-L-elsbetiae_contig1650:20487..214341622815683.8709824-UTR-L-elsbetiae_contig1650:20487..21434Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1650 20488..21434 +
1691683036.1145291-UTR-L-elsbetiae_contig1650:20487..214341691683036.1145291-UTR-L-elsbetiae_contig1650:20487..21434Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1650 20488..21434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.8600597-CDS-L-elsbetiae_contig1650:19833..204871622815683.8600597-CDS-L-elsbetiae_contig1650:19833..20487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1650 19834..20487 +
1691683036.105095-CDS-L-elsbetiae_contig1650:19833..204871691683036.105095-CDS-L-elsbetiae_contig1650:19833..20487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1650 19834..20487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1650.4410.1

>prot_L-elsbetiae_contig1650.4410.1 ID=prot_L-elsbetiae_contig1650.4410.1|Name=mRNA_L-elsbetiae_contig1650.4410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=218bp
MTVPSRLRVLLVLFSLLAVWLPDRLSNATGSGHVNHTPRIGPSRAPATAS
VSRRRNAVACMNHCTAGAGAAALARPFMPGRGRGSARPRGGPPMLWALLS
ATGLVVATSTKSAVSQLLASEEGTNGEEGGADAGNKVATAMVSFIKAYKK
ELSPLIPPACRFLPTCSVYGVEAIEKFGPTKGAVLTAWRLMRCNPFAGYG
IDRPQWPPPGWFAGEKW*
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mRNA from alignment at L-elsbetiae_contig1650:19699..21434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1650.4410.1 ID=mRNA_L-elsbetiae_contig1650.4410.1|Name=mRNA_L-elsbetiae_contig1650.4410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1736bp|location=Sequence derived from alignment at L-elsbetiae_contig1650:19699..21434+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGTGCAGCCGACCGACCCCACGGGCTTACCGTGCAGGGTGGCAGAA GGCGAGCAGCGAGTAGGAACCCAGGCTAAAGACGGACTGTTTACCTCTGA TCAGTGGTCCAAGATTCGTGGTGCATGTTCAAAACATGACAGTCCCTTCC CGTCTTCGAGTACTGCTGGTGCTGTTTTCGTTGTTGGCGGTGTGGCTGCC CGACCGCTTAAGCAATGCTACGGGTAGCGGTCACGTAAACCACACCCCTC GAATCGGCCCCAGCCGGGCTCCCGCAACAGCATCAGTTTCGCGTCGAAGG AACGCCGTCGCGTGCATGAACCATTGCACTGCTGGTGCCGGAGCAGCAGC TTTGGCGCGGCCTTTTATGCCAGGCAGAGGCAGAGGCTCGGCGCGGCCCC GCGGAGGGCCACCGATGCTATGGGCGCTGTTATCTGCGACTGGGTTGGTG GTTGCAACATCCACCAAATCGGCAGTGTCGCAGCTCCTGGCGAGCGAGGA AGGAACCAACGGAGAAGAGGGAGGGGCCGATGCGGGCAACAAGGTCGCGA CGGCCATGGTCTCGTTCATCAAAGCATACAAGAAGGAGCTGTCGCCTTTG ATCCCACCGGCATGCCGGTTTTTGCCCACGTGCTCAGTGTATGGAGTGGA GGCGATCGAGAAGTTCGGTCCCACGAAGGGGGCTGTTCTCACGGCTTGGC GGTTGATGCGGTGCAATCCTTTCGCTGGGTACGGGATCGATCGCCCTCAG TGGCCGCCGCCTGGATGGTTCGCTGGAGAAAAGTGGTGAAAATACGTGCG TGTAACCTATAACGTAAGCCTCGTACAACAGAACGGAAAAGGAAGCACGC ACAATCAGTGAGTATTTCTGAGGCGTGATTTGGAAGAAATGTGGATCTAT GTTGCAAGCTTTCCCCCCGTAGAGACAGGTTTGAGACGACCGCTTGTAGG AGCGTCAAGCACGCCCCCCACCACAAAATGGGTTAGTAACACCAAGCTCA CTGCTGGTACTGTTGAGAGTGTGCTATCCTGCGAAGCTTCATTGTTGTTG CAGCTGGTAAACAAAGGTGCTCGTTTCAGATAGAACCTCCGTGTGTATTA TACGTATAGGTACTTGGTGTGTTGGCGTGGGGGCGATTGTATGATACGGG CTTCCAAGCAGAGGCCCTCTTTTTTTTGTTGGGATGTGTGACAAGCCTCG TTTTTTCCTAGCGTGGAGGGTGCTAGGTCCTATCAGTAGCTGCGTAGCGC CTCGACTGACTTGTGAGAGACTCGTCGGCAGCAATTATTACTGTGTCTTC GTTCTTTTTGTTCTGGATGCCTTCGCCCGTGACTTCGTCGGCGGTGGACT ACTGTTGTGCACATATTGTTGGGACTTTGCTTGCTTTCGTCAACACAGAG CAGTAGGCTAATCGTGCGCAGATTTCATTCCCATAGTCTCGCTCCCCCAT CTATTGGCCGCTCCGATCAACCCCCTACTACGTCTTGTACTGTTGTTATG CATGGAAACGTAGTGTAGCGTGTTGCCGGGAGTCAGCTCGGGTGTTGTGA GTAAGCGCACAGTGGATGAACGATTGAAAAGCCCCCCACAAGAAAGTGAT ATCTGCGCGACTTGCGCCTCCATGCTTGAGCTTGTTACACAGAACGGCCG CCTGTGCAAGGCGGCCTCAGCGGTCTGGGAATATCTGGCGACTTGGGGGG TGCGGTTTACTATGACATGGAAGCAAGTGCAAAAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1650:19699..21434+

>mRNA_L-elsbetiae_contig1650.4410.1 ID=mRNA_L-elsbetiae_contig1650.4410.1|Name=mRNA_L-elsbetiae_contig1650.4410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1308bp|location=Sequence derived from alignment at L-elsbetiae_contig1650:19699..21434+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAGTCCCTTCCCGTCTTCGAGTACTGCTGGTGCTGTTTTCGTTGTT
GGCGGTGTGGCTGCCCGACCGCTTAAGCAATGCTACGGGTAGCGGTCACG
TAAACCACACCCCTCGAATCGGCCCCAGCCGGGCTCCCGCAACAGCATCA
GTTTCGCGTCGAAGGAACGCCGTCGCGTGCATGAACCATTGCACTGCTGG
TGCCGGAGCAGCAGCTTTGGCGCGGCCTTTTATGCCAGGCAGAGGCAGAG
GCTCGGCGCGGCCCCGCGGAGGGCCACCGATGCTATGGGCGCTGTTATCT
GCGACTGGGTTGGTGGTTGCAACATCCACCAAATCGGCAGTGTCGCAGCT
CCTGGCGAGCGAGGAAGGAACCAACGGAGAAGAGGGAGGGGCCGATGCGG
GCAACAAGGTCGCGACGGCCATGGTCTCGTTCATCAAAGCATACAAGAAG
GAGCTGTCGCCTTTGATCCCACCGGCATGCCGGTTTTTGCCCACGTGCTC
AGTGTATGGAGTGGAGGCGATCGAGAAGTTCGGTCCCACGAAGGGGGCTG
TTCTCACGGCTTGGCGGTTGATGCGGTGCAATCCTTTCGCTGGGTACGGG
ATCGATCGCCCTCAGTGGCCGCCGCCTGGATGGTTCGCTGGAGAAAAGTG
GTGAATGACAGTCCCTTCCCGTCTTCGAGTACTGCTGGTGCTGTTTTCGT
TGTTGGCGGTGTGGCTGCCCGACCGCTTAAGCAATGCTACGGGTAGCGGT
CACGTAAACCACACCCCTCGAATCGGCCCCAGCCGGGCTCCCGCAACAGC
ATCAGTTTCGCGTCGAAGGAACGCCGTCGCGTGCATGAACCATTGCACTG
CTGGTGCCGGAGCAGCAGCTTTGGCGCGGCCTTTTATGCCAGGCAGAGGC
AGAGGCTCGGCGCGGCCCCGCGGAGGGCCACCGATGCTATGGGCGCTGTT
ATCTGCGACTGGGTTGGTGGTTGCAACATCCACCAAATCGGCAGTGTCGC
AGCTCCTGGCGAGCGAGGAAGGAACCAACGGAGAAGAGGGAGGGGCCGAT
GCGGGCAACAAGGTCGCGACGGCCATGGTCTCGTTCATCAAAGCATACAA
GAAGGAGCTGTCGCCTTTGATCCCACCGGCATGCCGGTTTTTGCCCACGT
GCTCAGTGTATGGAGTGGAGGCGATCGAGAAGTTCGGTCCCACGAAGGGG
GCTGTTCTCACGGCTTGGCGGTTGATGCGGTGCAATCCTTTCGCTGGGTA
CGGGATCGATCGCCCTCAGTGGCCGCCGCCTGGATGGTTCGCTGGAGAAA
AGTGGTGA
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