mRNA_L-elsbetiae_contig1650.4409.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1650.4409.1
Unique NamemRNA_L-elsbetiae_contig1650.4409.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1650.4409.1 vs. uniprot
Match: A0A6H5JMR2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMR2_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.500e-32
Identity = 89/169 (52.66%), Postives = 110/169 (65.09%), Query Frame = 2 
Query:  182 MHLSVGRSVAMVSVATALRNASGFVGHLRVGGKYSAGR-MRMS-GSAQASQINHPAPRTSTVPVLDAQAAELKAERLWGMADARKP---LSTERKNGMPEVQMAVGVTARSIIADARG-----EREASNFIEGQGVVSALRRYQYTEQLLEDGDG--DGMDDDGNEYYI 652
            M L VGRS+AM+++A  LRNASGFVG +R     SAG  +RMS G   AS+         +VPVLDAQAAELKAERLWGMADA+KP   + +ER + + EVQ A   T+R       G     +RE  +FIEG+G  SALRRYQY++QLL D D   +  +DDGNEYYI
Sbjct:    1 MQLCVGRSMAMLAIA--LRNASGFVGPVRFTAARSAGVVLRMSSGPTSASR--------PSVPVLDAQAAELKAERLWGMADAQKPGLSVPSERLD-LGEVQAAAESTSRQDSVSMPGMGVFGKRERDDFIEGEGETSALRRYQYSDQLLTDDDSGEESREDDGNEYYI 158
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1650.4409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMR2_9PHAE1.500e-3252.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1650contigL-elsbetiae_contig1650:16392..19165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_001730.1
Exons3
Model size1477
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1650.4409.1prot_L-elsbetiae_contig1650.4409.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1650 16573..18343 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.7571092-UTR-L-elsbetiae_contig1650:16391..165721622815683.7571092-UTR-L-elsbetiae_contig1650:16391..16572Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1650 16392..16572 +
1691683036.0405629-UTR-L-elsbetiae_contig1650:16391..165721691683036.0405629-UTR-L-elsbetiae_contig1650:16391..16572Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1650 16392..16572 +
1622815683.810312-UTR-L-elsbetiae_contig1650:18343..191651622815683.810312-UTR-L-elsbetiae_contig1650:18343..19165Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1650 18344..19165 +
1691683036.0826406-UTR-L-elsbetiae_contig1650:18343..191651691683036.0826406-UTR-L-elsbetiae_contig1650:18343..19165Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1650 18344..19165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.773751-CDS-L-elsbetiae_contig1650:16572..166811622815683.773751-CDS-L-elsbetiae_contig1650:16572..16681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1650 16573..16681 +
1691683036.0501387-CDS-L-elsbetiae_contig1650:16572..166811691683036.0501387-CDS-L-elsbetiae_contig1650:16572..16681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1650 16573..16681 +
1622815683.7849433-CDS-L-elsbetiae_contig1650:16975..171511622815683.7849433-CDS-L-elsbetiae_contig1650:16975..17151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1650 16976..17151 +
1691683036.062575-CDS-L-elsbetiae_contig1650:16975..171511691683036.062575-CDS-L-elsbetiae_contig1650:16975..17151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1650 16976..17151 +
1622815683.7986057-CDS-L-elsbetiae_contig1650:18154..183431622815683.7986057-CDS-L-elsbetiae_contig1650:18154..18343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1650 18155..18343 +
1691683036.0721955-CDS-L-elsbetiae_contig1650:18154..183431691683036.0721955-CDS-L-elsbetiae_contig1650:18154..18343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1650 18155..18343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1650.4409.1

>prot_L-elsbetiae_contig1650.4409.1 ID=prot_L-elsbetiae_contig1650.4409.1|Name=mRNA_L-elsbetiae_contig1650.4409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MHLSVGRSVAMVSVATALRNASGFVGHLRVGGKYSAGRMRMSGSAQASQI
NHPAPRTSTVPVLDAQAAELKAERLWGMADARKPLSTERKNGMPEVQMAV
GVTARSIIADARGEREASNFIEGQGVVSALRRYQYTEQLLEDGDGDGMDD
DGNEYYI*
back to top

mRNA from alignment at L-elsbetiae_contig1650:16392..19165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1650.4409.1 ID=mRNA_L-elsbetiae_contig1650.4409.1|Name=mRNA_L-elsbetiae_contig1650.4409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2774bp|location=Sequence derived from alignment at L-elsbetiae_contig1650:16392..19165+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCAGACTCGCTCCCCTCGCGCACTCACACCCATCCAGTTAATCTTGAG
ATCCTGGCCGTAAGAGTGTGGCTGATTGGGTAGTCAAGGGCTCAGAAGAC
CAAGGCCACGTGCCGTACAAACAGCTCTTGACAACACAAGTTCCGTGAGA
GAGTGAGTGAGCGGCACGAGTGCGTTTTAGCATGCACTTGAGCGTTGGAC
GTTCAGTGGCGATGGTCAGCGTGGCGACGGCGCTGCGAAACGCGAGCGGG
TTCGTGGGGCACCTACGAGTCGGTGGAAAATACTCTGCAGGTGAACGAAG
TACATTATATCCCTGGCTACAATACGATGCACAAGTTCAGCGAAGTTCAG
CCGTCGCATCGCATCAAGTTGAGGTTGAATTTTCCAGCTGCTCTGTCCGC
CCCACCACTGACCCCCGCCCGTGGTCGACGCCTCGACAACACGCTTCCAG
CGTGATGTTACCTTCGAGCGGGTACGGGGCATCACCCATGCGTTGGTACT
TCTGTACTGGTCTCGGTTCGGTGAGCACAAGAAAGCGCGTCTTTTTTTCA
GCAATTCCCGGGTTTCCCGAATTAATTTTGCCAGGTCGGATGAGGATGAG
CGGTTCAGCTCAGGCCTCCCAAATAAACCACCCCGCGCCGAGAACTAGCA
CCGTACCGGTGCTGGACGCCCAAGCCGCGGAGCTCAAGGCCGAGCGGTTG
TGGGGCATGGCGGACGCCCGTAAGCCGTTGTCGACGGAAAGAAAAAACGG
GATGCCGGAGGTGAGTCAGTTCTCCGGGCCGTTCAGCCAAACAGCAAACT
TCAAACTTCTCGTCTCCCTGTCAATGGCAGTGCGGTACCCATCTTTGTGT
CTGTTGTTTGTCGGCGTGTCTTGACTATCTCTATTCCTCTACCTCCACCC
CAAGCGAAGCTAGACAGCAAAAAAGGGCGTCGCCCTAGTACACGAACACA
AACGACACAGCAGCCAGTTTGCCGTGAGAGAGCTCGTTGTCTTACACGTG
TCATACGCCCACCAGCTAAACACCACCTACAGAAGAAAACTTGTCTACGG
TCCGTATTGCGTACGCAAACCTCACTTCGGAATGTGGTTTTATGAGTTAG
ACCTCTGTAAACGTTCCAGTTTTATCTGACTCTCGATTGTTTTGTATTTT
TTTTGTTTCGTTCCTTTCGGCGAGTTCTTGCCTCTGAATGTAGGGTTGGT
GACGCGGAAAGAAGCTTCCTGTAGCTCCTGTGCTTGTCGAGGGTATAGCA
AAAAAAATGAAGCGAATCGGGGCTCCAGTCACGGAGTAGGGATGGTTTAC
ACGGATCGCAAGTCCTAGGAGCACCCACAGTAAAGAATCACGCGCGTCGA
AGACCCCCCCAACCAAAAGCCCCCGCCCTCTCAGGCACGCGCTGGCACAG
CAGTGCGCTAGCCCTTGGAGCCCGCATGCTCCATCTCGAACGAAATAGAC
GACAGCAGATACAACCTACGTGCTCATAGCTAGAGTCGGTGCCATAGCTA
GTGTCGGTGCATGTTTCAGACCCCGGATCACTCTGTGAGTATCGAATTAG
AGCTGCTGTCCAACACACGTTGACACTGGAGCGTGAAATGGCAGGACGGG
AAGCGAAAGCAACTTCCTCACAGTTCCGTTCCACGCGTACTTGCAAACGG
CACTTATGTCGACATCTGCTCCACAGCCAGACGACCAAACTAGCGAAGAA
CGTAGTGAGACGACCCCAACCCCCCCCCCCCCCTCCCAAATGATTGTTAT
TGAAATAACTCAGGTCCAGATGGCGGTGGGTGTAACCGCTAGGTCAATCA
TTGCGGACGCCAGGGGCGAGAGGGAGGCGAGTAACTTCATCGAGGGGCAG
GGTGTGGTGTCCGCATTGCGGCGGTACCAGTACACGGAACAGCTGTTGGA
GGACGGTGACGGTGACGGGATGGACGACGACGGAAACGAGTACTATATCT
GATAGCTACTGCTGTAGTAGCTGGGCTGTGTTGCTGGCCCGAAGAAATCA
GGATAGGAAAAAGCTCTTAAAGCAAGTCGTGAACTTAACGTACTTTCGTC
TGACTGATTGGAAACGAGAATGGCTGACACAGCAGCAGTATCTCCTACTA
CTGCTGTTGTTTATGTAGCGGCGAGGCTTGATACAAAAGCCCTCGCACGT
GAAATGAAGGCGGTGGCCTGTGTTCGTAATAAAGTTGTCACGGGCTCGGC
TGCTGTTGTAATCTAGCTGTCATTGCGCAGATGAGCTACTAGCTGACTAC
CGTAAGCAGGCGGCGGAGGCGGCGGGCCTGGCAATGGCGCGTAGGATAGA
TAGCCTCTGGCATGCACCAAAGCCTTTCGGCGGTGTGTACGCCATCGTGA
TTGATGTTACCGTTGGTTTCCGTCGTGGTGTTGTCGCGTGCACTTGTGTG
CCGTGGTGCGTATGTGCTGTTACAGATCAGATGAGTTCAAGAATGTGCGG
TCGTTCGTCGATCGCTGAAGGTGGAAGGAAACACTTGTGTTGGTAATGTC
AACACTAATAGGACGCTGCCGTGCCGCTCGTACGGACGGTGTAGACCTCT
TGCCCTGAGAGCTACATGGTACTCTCGTGTTCGCCGACTTTGTCCGGGTC
GTAGCTACTCATTTTGATCCTGAGTCTCTTGCGTGTCCGCGATGCCGCCG
TTCTGAAATATGTACAGGTACCATATTTTGTGCGGGCTGTTCGCCCCCCT
TCTGCCTTTTGGTGTGTGTTGCAATGTCAAAGAGCTCGGCCAATCTGTTT
GTTACGCACACACCTTCACAGAGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1650:16392..19165+

>mRNA_L-elsbetiae_contig1650.4409.1 ID=mRNA_L-elsbetiae_contig1650.4409.1|Name=mRNA_L-elsbetiae_contig1650.4409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig1650:16392..19165+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACTTGAGCGTTGGACGTTCAGTGGCGATGGTCAGCGTGGCGACGGC
GCTGCGAAACGCGAGCGGGTTCGTGGGGCACCTACGAGTCGGTGGAAAAT
ACTCTGCAGATGCACTTGAGCGTTGGACGTTCAGTGGCGATGGTCAGCGT
GGCGACGGCGCTGCGAAACGCGAGCGGGTTCGTGGGGCACCTACGAGTCG
GTGGAAAATACTCTGCAGGTCGGATGAGGATGAGCGGTTCAGCTCAGGCC
TCCCAAATAAACCACCCCGCGCCGAGAACTAGCACCGTACCGGTGCTGGA
CGCCCAAGCCGCGGAGCTCAAGGCCGAGCGGTTGTGGGGCATGGCGGACG
CCCGTAAGCCGTTGTCGACGGAAAGAAAAAACGGGATGCCGGAGGTCGGA
TGAGGATGAGCGGTTCAGCTCAGGCCTCCCAAATAAACCACCCCGCGCCG
AGAACTAGCACCGTACCGGTGCTGGACGCCCAAGCCGCGGAGCTCAAGGC
CGAGCGGTTGTGGGGCATGGCGGACGCCCGTAAGCCGTTGTCGACGGAAA
GAAAAAACGGGATGCCGGAGGTCCAGATGGCGGTGGGTGTAACCGCTAGG
TCAATCATTGCGGACGCCAGGGGCGAGAGGGAGGCGAGTAACTTCATCGA
GGGGCAGGGTGTGGTGTCCGCATTGCGGCGGTACCAGTACACGGAACAGC
TGTTGGAGGACGGTGACGGTGACGGGATGGACGACGACGGAAACGAGTAC
TATATCTGAGTCCAGATGGCGGTGGGTGTAACCGCTAGGTCAATCATTGC
GGACGCCAGGGGCGAGAGGGAGGCGAGTAACTTCATCGAGGGGCAGGGTG
TGGTGTCCGCATTGCGGCGGTACCAGTACACGGAACAGCTGTTGGAGGAC
GGTGACGGTGACGGGATGGACGACGACGGAAACGAGTACTATATCTGA
back to top