mRNA_L-elsbetiae_contig1650.4407.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1650.4407.1
Unique NamemRNA_L-elsbetiae_contig1650.4407.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1650.4407.1 vs. uniprot
Match: A0A6H5KHH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHH6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.350e-12
Identity = 37/53 (69.81%), Postives = 38/53 (71.70%), Query Frame = 3 
Query:  399 VAGHLATETREKHVFTSHFQDYVECRDRTYFRTRDXXXXXXXXKARDPSRSKK 557
            +AG  ATE RE HVFT  FQDYVE RDRTYFRTRD        KARDPSRSKK
Sbjct:    1 MAGRRATEARESHVFTRDFQDYVESRDRTYFRTRDHFSDYAEAKARDPSRSKK 53
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1650.4407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHH6_9PHAE1.350e-1269.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1650contigL-elsbetiae_contig1650:1510..3926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_001620.1
Exons4
Model size827
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1650.4407.1prot_L-elsbetiae_contig1650.4407.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1650 1777..3786 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.5379484-UTR-L-elsbetiae_contig1650:1509..17761622815683.5379484-UTR-L-elsbetiae_contig1650:1509..1776Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1650 1510..1776 -
1691683035.8795707-UTR-L-elsbetiae_contig1650:1509..17761691683035.8795707-UTR-L-elsbetiae_contig1650:1509..1776Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1650 1510..1776 -
1622815683.591421-UTR-L-elsbetiae_contig1650:3786..39261622815683.591421-UTR-L-elsbetiae_contig1650:3786..3926Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1650 3787..3926 -
1691683035.9343178-UTR-L-elsbetiae_contig1650:3786..39261691683035.9343178-UTR-L-elsbetiae_contig1650:3786..3926Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1650 3787..3926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.5489626-CDS-L-elsbetiae_contig1650:1776..18981622815683.5489626-CDS-L-elsbetiae_contig1650:1776..1898Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1650 1777..1898 -
1691683035.894322-CDS-L-elsbetiae_contig1650:1776..18981691683035.894322-CDS-L-elsbetiae_contig1650:1776..1898Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1650 1777..1898 -
1622815683.5588827-CDS-L-elsbetiae_contig1650:2530..25971622815683.5588827-CDS-L-elsbetiae_contig1650:2530..2597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1650 2531..2597 -
1691683035.9053357-CDS-L-elsbetiae_contig1650:2530..25971691683035.9053357-CDS-L-elsbetiae_contig1650:2530..2597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1650 2531..2597 -
1622815683.5714042-CDS-L-elsbetiae_contig1650:3305..33581622815683.5714042-CDS-L-elsbetiae_contig1650:3305..3358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1650 3306..3358 -
1691683035.9147763-CDS-L-elsbetiae_contig1650:3305..33581691683035.9147763-CDS-L-elsbetiae_contig1650:3305..3358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1650 3306..3358 -
1622815683.5817063-CDS-L-elsbetiae_contig1650:3608..37861622815683.5817063-CDS-L-elsbetiae_contig1650:3608..3786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1650 3609..3786 -
1691683035.9254513-CDS-L-elsbetiae_contig1650:3608..37861691683035.9254513-CDS-L-elsbetiae_contig1650:3608..3786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1650 3609..3786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1650.4407.1

>prot_L-elsbetiae_contig1650.4407.1 ID=prot_L-elsbetiae_contig1650.4407.1|Name=mRNA_L-elsbetiae_contig1650.4407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
MTDHQSHDGNQLSFAEREANDLRELHLSATFLTPFAVAATQDNQVWLSNN
QQDYIDHSKGGNNSDMTPVVVKKRSEMASMIGFQGRVAGHLATETREKHV
FTSHFQDYVECRDRTYFRTRDHFSDYAEAKARDPSRSKK*
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mRNA from alignment at L-elsbetiae_contig1650:1510..3926-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1650.4407.1 ID=mRNA_L-elsbetiae_contig1650.4407.1|Name=mRNA_L-elsbetiae_contig1650.4407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2417bp|location=Sequence derived from alignment at L-elsbetiae_contig1650:1510..3926- (Laminarionema elsbetiae ELsaHSoW15)
CCGTCTGTCTGGCCGTCACTCGTTCATCTTCTCTGCCGCATCAAGAAATC
AAAAACACGAGTATCCCCCCCTAATTCCACCTCAGGTGTGGAACGCAAAG
GACGCGCGCGACAGCTTCATCCGTGAATCCAAAAGGAAAAATGACCGACC
ATCAGTCACACGACGGTAACCAACTTTCTTTTGCGGAGAGAGAGGCGAAC
GACCTCCGGGAGCTTCACCTAAGTGCCACCTTTCTGACGCCATTTGCGGT
AGCTGCGACTCAGGACAACCAAGTCTGGCTCAGCAATAATCAGCAGGACT
ACATAGACCACTCAAAGGGTAAGAGTGAGAATATTGCACCAGATGCTCTC
GAAAACTGACGTTGTTACCGGCGGGCGGCGGGGACACCGCCTCTGCTGGT
GAGATGGATCGAATCATCCCCGAGCACAAATCATGTTCGCTGGAAACATG
AAGTGAATGGCCATCTCACTACAATAACAACGCGCTTGATATTTAGTAGT
GCCTTCTGTGGGGCTAACGTTGTGGAACTTTCGATGTTTATGCATGCACT
TCAATGTCACTTCATCAGGAGGAAATAATAGTGATATGACCCCAGTCGTG
GTGAAGAAGAGGTCAGAGATGGTGAGCTCCTTAGTGTGTATAATGTCAGG
TCACGTGAGCTAGCTATCTTGGACGAAGTGTAGCCTACATATAGCACAGT
GTATATGTTTGGCTGCGTATGAAGCGTACAACGAATCACGCTTGATTTTA
AAGAAGACAGAGTACTTGCACGTGAAATCTACTTTCAGAAGAACATTTTG
AGCAAGCGGAGTCAAAGACAGCTCCTGTTTATCCCGCACTTGTTCTGTTG
GAATACGAATACTGGATACAGTTGGGTAAGACGGAGCCATGTCTAGGTGC
AGGCACAGATGTGCACAGTCAAGAGGTGTAGACGTGGAGGCTACATACAT
ATGTAGTTCTGACGCTACATGTTTTTCAAGAAATCAAGTCGGTGGAAAAA
GCTAGTTCGTGTCTACACTTGAGGGAAGGCGGACGGGACTGTTCTCGCGT
TAAAATGAAAAAGTTGAAGGCCAGCACCGCAGAAGGGGAGAGGGGGGGGG
GTCAGGGAGAATAACTCTTTCTGTGCGACCACGGTTCAGAGCTCAGACAA
GATGCCCCCTCTTGGCAAAGAGCCCTTCGAGCGCTGAAAATAAATGTGAA
GAACAATAAATAAAGGTAAACGTACGTGTGTTGTACCTCTCTTAGGTGTT
TGCGTGTATAGGCAGCCATATGTACGGGTACGCACTTACGTGGTATTGTC
ATGTTTTCTCCCCTCTCGGTCTTCGGCAGGCATCGATGATAGGCTTTCAG
GGCCGAGTAGCTGGGCATCTCGCCACAGAGACTCGCGAAAAACACGGTGA
GCAAGCACAATTTATTTGCCGCTATCGCAATGCTAGAGGTCGTTCCCGTC
ATTTTTTTCAAGAAGCCCCACGTCATCACGCATACGCTCACTTGTTTCAA
AGAAAGGCTGCCATAGGATGAGTGTTGTGTGGTATGCTGCACTCGGCCGA
GGCTGAGCACTCTCTCTGTCGGCATTCAGATTCGCGAGTCTTGCGGCATC
GTTTTCACGAGAGGCCTAGTATTGCGCGCTTGGGTAAACTGCGCACAATC
AAGGCTGATGGTTCCTCAAAAATGTCTATGTATAAACTCTCACTCACGTG
CTCTGTGTTGCACCGTGCACTGGGGGGCGATTGCCTTGCTTGGAAGGCCG
TCCTTAATCCAACCCTTCAAGCAACAAACAGCACCACAAGCAGGACAATA
AATGCTTTAACCGTTTCCCTGTGCGGAACAAAAAAGTTAAATTCAACCAT
GGGCAGAAGCCCTGGCCGCCGTATGTATGTGGCTCAAGATGAAATCTGAC
GGCCGTGCCTCTTTGCTCGCAGTGCTCTATATCCCGCAAATCATGTGTCC
CCCCTCTCCAAGTTGCCCTCTGCGTAAGAAACGCCTCTGCCCCTCTTCCC
GCTTGCGCATTGTACCACATCATCGCAGTGTTCACGAGCCATTTCCAGGA
CTACGTAGAGTGCAGAGACAGGACCTACTTCAGAACCAGGGATCACTTTT
CAGATTACGCGGAAGCCAAGGCCCGAGACCCTTCTCGATCCAAGAAGTAG
GGCCGAGACAAACGAAACAATAGAGCAGTATTTTTAACAACAAAATACCC
AGCAGCCGAGTTCTGAGTAATAAGCTGGTACTGACTGCTTTGTAGCAGGT
GACTCTGTGTCACTGGCAGTGGTGGCGACGACGAGGTGGATATATGTCGT
GTGGAGACGAAAAAGGTGTGCTCTCTTACACATCTTTGATTGTTGCGTGA
TGGAGTTATGCCGTACGAATGTGTATTTCTTGACTTTAGCTTTAGCTCTC
CCCCCCTGCAACAGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1650:1510..3926-

>mRNA_L-elsbetiae_contig1650.4407.1 ID=mRNA_L-elsbetiae_contig1650.4407.1|Name=mRNA_L-elsbetiae_contig1650.4407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig1650:1510..3926- (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGACCATCAGTCACACGACGGTAACCAACTTTCTTTTGCGGAGAG
AGAGGCGAACGACCTCCGGGAGCTTCACCTAAGTGCCACCTTTCTGACGC
CATTTGCGGTAGCTGCGACTCAGGACAACCAAGTCTGGCTCAGCAATAAT
CAGCAGGACTACATAGACCACTCAAAGGATGACCGACCATCAGTCACACG
ACGGTAACCAACTTTCTTTTGCGGAGAGAGAGGCGAACGACCTCCGGGAG
CTTCACCTAAGTGCCACCTTTCTGACGCCATTTGCGGTAGCTGCGACTCA
GGACAACCAAGTCTGGCTCAGCAATAATCAGCAGGACTACATAGACCACT
CAAAGGGAGGAAATAATAGTGATATGACCCCAGTCGTGGTGAAGAAGAGG
TCAGAGATGGAGGAAATAATAGTGATATGACCCCAGTCGTGGTGAAGAAG
AGGTCAGAGATGGCATCGATGATAGGCTTTCAGGGCCGAGTAGCTGGGCA
TCTCGCCACAGAGACTCGCGAAAAACACGGCATCGATGATAGGCTTTCAG
GGCCGAGTAGCTGGGCATCTCGCCACAGAGACTCGCGAAAAACACGTGTT
CACGAGCCATTTCCAGGACTACGTAGAGTGCAGAGACAGGACCTACTTCA
GAACCAGGGATCACTTTTCAGATTACGCGGAAGCCAAGGCCCGAGACCCT
TCTCGATCCAAGAAGTAGTGTTCACGAGCCATTTCCAGGACTACGTAGAG
TGCAGAGACAGGACCTACTTCAGAACCAGGGATCACTTTTCAGATTACGC
GGAAGCCAAGGCCCGAGACCCTTCTCGATCCAAGAAGTAG
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