mRNA_L-elsbetiae_contig1643.4370.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1643.4370.1
Unique NamemRNA_L-elsbetiae_contig1643.4370.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1643.4370.1 vs. uniprot
Match: D8LN22_ECTSI (PFfh, plastid Ffh subunit of the signal recognition particle n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN22_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 2.880e-8
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:  283 TPFDGLGGPPIEPGAAPSMNRQQRRQAKKNKGGRAAAPSKGFG 411
            +PF GLGG    PGAAPSMNRQQRRQ+KKNK GR+AAPSKGFG
Sbjct:  516 SPFQGLGGD-TAPGAAPSMNRQQRRQSKKNKAGRSAAPSKGFG 557
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1643.4370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN22_ECTSI2.880e-879.07PFfh, plastid Ffh subunit of the signal recognitio... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1643contigL-elsbetiae_contig1643:18542..23444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog2880.D8LN22
KEGG koko:K03106
KEGG TC3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categoryother localisation
EggNOG free text desc.7S RNA binding
EggNOG OGsCOG0541@1,KOG0780@2759
Ec32 ortholog descriptionPFfh, plastid Ffh subunit of the signal recognition particle
Ec32 orthologEc-13_002170.1
EC3.6.5.4
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Exons3
Model size772
Cds size414
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1643.4370.1prot_L-elsbetiae_contig1643.4370.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1643 18542..23088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.1315398-CDS-L-elsbetiae_contig1643:18541..188181622815679.1315398-CDS-L-elsbetiae_contig1643:18541..18818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1643 18542..18818 +
1691683032.9526784-CDS-L-elsbetiae_contig1643:18541..188181691683032.9526784-CDS-L-elsbetiae_contig1643:18541..18818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1643 18542..18818 +
1622815679.143845-CDS-L-elsbetiae_contig1643:18856..189231622815679.143845-CDS-L-elsbetiae_contig1643:18856..18923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1643 18857..18923 +
1691683032.9641106-CDS-L-elsbetiae_contig1643:18856..189231691683032.9641106-CDS-L-elsbetiae_contig1643:18856..18923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1643 18857..18923 +
1622815679.1548707-CDS-L-elsbetiae_contig1643:23018..230881622815679.1548707-CDS-L-elsbetiae_contig1643:23018..23088Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1643 23019..23088 +
1691683032.972173-CDS-L-elsbetiae_contig1643:23018..230881691683032.972173-CDS-L-elsbetiae_contig1643:23018..23088Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1643 23019..23088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.1673758-UTR-L-elsbetiae_contig1643:23088..234441622815679.1673758-UTR-L-elsbetiae_contig1643:23088..23444Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1643 23089..23444 +
1691683032.980241-UTR-L-elsbetiae_contig1643:23088..234441691683032.980241-UTR-L-elsbetiae_contig1643:23088..23444Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1643 23089..23444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1643.4370.1

>prot_L-elsbetiae_contig1643.4370.1 ID=prot_L-elsbetiae_contig1643.4370.1|Name=mRNA_L-elsbetiae_contig1643.4370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
FTAFPGSESCRTRACAHLPSSKRRTCLSACRIEVSCYSPFVHNSSVPANG
RDFAPATYPIVFKSQPLFSRSSVRRRSSKSSGVCRATCRGWVKATPFDGL
GGPPIEPGAAPSMNRQQRRQAKKNKGGRAAAPSKGFG*
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mRNA from alignment at L-elsbetiae_contig1643:18542..23444+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1643.4370.1 ID=mRNA_L-elsbetiae_contig1643.4370.1|Name=mRNA_L-elsbetiae_contig1643.4370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4903bp|location=Sequence derived from alignment at L-elsbetiae_contig1643:18542..23444+ (Laminarionema elsbetiae ELsaHSoW15)
TTTACCGCGTTTCCAGGCAGCGAGAGCTGCAGAACTCGAGCCTGTGCCCA
CCTCCCCTCTAGCAAGCGACGTACTTGTCTGTCGGCCTGCCGAATCGAGG
TTTCGTGTTATTCTCCTTTTGTACACAACAGCAGTGTTCCAGCGAATGGG
AGAGACTTCGCACCCGCTACCTATCCTATCGTTTTCAAGTCCCAACCACT
TTTTTCTCGGTCGTCTGTCCGCAGGCGTTCCTCAAAGAGTTCCGGGGTAT
GCAGAGCAACATGTCGAGGATGGGTAAGCAGATGGCCGACGGCGACCCGA
ACGCCGCCGCCGGAGAGGCCACGCCCTTTGATGGGCTCGGCGGGCCCCCC
ATCGAGCCGGGAGCGGCACCGTCGATGAACAGGTGGGAAAAAATCGTTAG
CTCCCCTACCGTTTCGGGGTTTCGGGCCAGGACCCTACGTCTTCGTAGGG
ATGCAGATACGTGGGACTCCAACAGTAGGGGGGGCTATTCCAGGAGCCTA
AGCGGGTTTGTACGTGATTTAATACACGGGATAGAGTATATAAACGGCTC
CAAGCGGGTACTGTAGGTTATGTTTTCATTTTCGTTTCTCCACATTCATA
TTTATTCCCTTTGCTCGATGTGCTCCTTGCCACGAGGGCATTTTGCCAGA
GTACTGAACCGTGGTCACACAGAAGGGTTCCTTTCCCTAAGCCCCCACTC
CCTCTCCCCTTCTGCGGTATTTGCCTAAGATTGTTTTCACGAGAATGGTT
CAGCCGTCCCTTTCCCTCGTCGACGGCGAGGATGGGTCCTTCCATCAAGA
AAACAAAAGGGAAATCGAAGTCCAAATTAAAAAGCAAAAAACAAATCGAT
TTCGATTTTCGATAGCGGTTGCGTCAAAGCAAGCGCAAGATTCAAATCCA
AAATCAAAATCGATACGGTGGAGTTGAAAAAGCCCGAAATATCTTACTGC
AATGCTTCAAACGATGGCCATGACAGCTGTGGGGAATCAGAGCTATCGAA
AGACAGCTCCGGACAACCGCCCAGTTGAGGCCTACATGGAATGCCAGCTT
CTTTACGAGGCGCGACGTGTTCAGCGAGGAATGCGTGTTAAGAGTGTGCT
GCGGTGTGACAGCAGAGCGGCAAAAAGAGGCTGATGTTGGACACGAAATC
TTTCACGCCGATGGCTGTAGCTCGTTCAATTTGCAGCGTTTGCTGCTGTT
CCAAAGCATTTTGTGCCTTGCAGAATATCTGTTTAATACGAAGGTATCGC
ATGTGTCACGAAGCCGCCTATAGGTGGCAGGGTAAGTAAAGGCCGGAGTA
AAGGCGTGTCCATATTTCATTAGCGTTTGGGATCGCCGGAGCACCACCGT
CAAGTATCCCTCACTCTTTCAGACCCAAAACCTTTGATTTTTCGTCGAGG
AGCAAGATATCGCAACATTGTGCCAACGTTGCAACAAAATAGCCTGTTCG
TGCAAAAGGCTGCAAACTTTTCGCCCGATAATGTTTTTCTAGCAAAAAGT
TGTCAAAATGTTGCCTCTCTTGCTCCTCGACGAAAAATCAAACTCGAAGT
CTGCCAGAATGGGCAGGAGATCTAGAAACCTCTGGACGAGAGCTTCAACT
GTTCTCGAGGTGCGCAGGCACGATTCCGAGCTGTTGGCGATGAAAAGTGC
CCAAAAATAGGAAAAAAGCAACTTTTCTCAAAATAAACTTTGTGCTCCCA
TAAAAATCGGAGTCACAGAGGATGAAATACCCCGGGTTGGCTTTGTGAGT
ATCCTGCAGAACACACCCTTGAAGCATTTCGTGCACACGCCAAGCGCTAT
CCAATGACGGTCGAAAGCGAGAGAAAACTCACTTTTGCGAGAAGAAGTCG
CTTTCGCCGGGGCCCGAACCCGCGATATGCCTGCTTGAAGGTGTACGGGG
ATACCAACTAGACGACCGGCTAGGGTTACGGTTATATGGAACCCCTGTCT
GTATTTCGTAAATGAACTTGATTTCTTCACGAAGACGGCCCGATTTTTGG
AGCTTGCATGTGGGCATATCGGGGATGAAACTGTGCCTGTCATTTTTACA
TGTGAAGTAGTGTTCCTTTGACACCGGTGTTGGTCGTGTCTGAAGCTGTG
ATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCT
TCCCTTTTATTTTGGCGACAGTAGTCCCCCCAAGTGGAGACGTGTACTAC
ACCTCGCGGTGTACTTAAAGGTACTACACTTTGCAGTGCATTTGTCTGTA
CAATTAGAACCAACCGGGGTCACACAGGAGGAGGTGAACACTGGGTCTTT
TCTTCTGTCTTATTTTCTTTTTTTGCGCCATATTCCTCCTGCGGTTCTTG
CCTTGGGTTTTATCGCCAAAGGGGTTCATCTGTCCCTTTCCCTCGTCAAC
GTGATTACGTCTAAGTTTGGTACTCACGAGCTTTTCAGCTTTAATCGCCT
TCACCTGCCAAGTCGCGGAATAAACACTTGTGCTTGGGATTGAACTCCAG
ACTTTGCTGCCAATGGGTTCGAGGTTAAACCACCACCGGGGCGACTGGTG
GGTCTATGTGATTATTGGAGTTAAATTATTTTTGCCTTTCTCAGTGGGCA
GATTCTTACATCAAAAACTATTCGGGATCGAGCGACCTTCTTACGGGTAG
ACGAGGTATTTTTTTTTCGTAGGGGCAAAAAAACGGGCGGTTGTGCATCA
CAGGATGCTTCCATTCACGTTTTCAGCTCGTATTCGACCGACAAGTCGCA
GAGCGCTCTTATTTTGGGACGCCTGCAGAGGGTATATGCACGACCCCACG
CCATCGGCTGCAGTTTGTGGTTATTACTAGCCTAAGGCCTCCATCGGGCA
TGCGCTTTTTGCTTGACACACATCAACACAGCGACGAAAAAATGCCTAGA
GTAAAAAAAGTCCCGCATCGAAATCAACCCCAGTAGAAGTTTGCTGGTCG
TGCGCACTCAATTCATGGCCGCGTGCCCTGATTTTGGGATGCCTGCAGAG
GCCATGAGTATGAGCCCCCGCCATGGGCAGCAGTTTGTGGACGTCGTCGG
GCTAAGACCTCTCTCGGGCATATGCGCTTTTTGCTTGACACACATCAACA
CAACGACCAACAGAGCGAGGAGTAAAAAAAGTCCCGCATCGAAATCAACT
CCAGTCGACGTTCGCTGGTCGTGCGCACCCAATTTTTGGCCTCGTGCCCT
GATTTCGGGACGCCTGCAGAAGCCTTGTGTATAAACCCACGCCATGGGCA
GCAGTTTGTGGATGTTGCAGGCCTAAGGCCTCTCTCGGGCATGCGGTTTT
TGCTTGATACACACGCAGCGGGCAAAAACCGGCTCTTTTCACACCCAAAC
GGAGATTGTGGGCAGTGCAACGTTTGCAGCCGACGTTTTAGCTCGTGCGT
GGTCAACAAAGCGCTGAACATCCTGAATTTTGGATGCCTGCAGAGGATTT
GTCCATGACCCAACCGTATTGACCTCTGGGCAGCAGTTGATGTAGTTGCT
CGTTTTGGCATGGTCACTTGTGTGTGATCGGGTGATCGGGTGTGACCCCC
CCCAATTCCTATCGCCAAAAAAGTTATCGGATCCCAGTTAATAAATGGGC
CCATTTTCTCACTCGGCGACTGGAATGCCTGATTATTTTTGGGCTGCGGA
AGAAGCCCAACATTTTTTTTCTGTAGGAAAATGAACCCCCCTTCCCCCCC
AATATTTATTCGAAAAAATCACATCGTAAGGAACGGCCTGACCACTTTTT
CTCGCCGAGAGCTCGGAATCAGATTTTCGCCACTTGGTGACTTTCAAAGC
TCCCCTCTAGAGGTCTCCATATCAGCCGTCCAATCTGGGACACTCCGGAT
TTTGCTGTTGGCCTCGGAGCAAGATTTGGCTAGACTTGGCCAAGATTTGG
AGATTTTGCAAGTGTTGGCTGAAGGTTTGCGCGAATACGAATTGGCCACA
TCTAGCCAACTGTTGCTCCGAGGACAAAAATCGAACCTGGAGTGTACCAG
AATGGAGCAAGATTTGGCTAGAATTGGCCAAGATTTGGAGATTTTGCAAA
TGTTGTCTGAAGGTTTGCCCGAATATGAATTGGCCACATATCGCCAAATG
TTGCTCCGAGAACACCAAACGAACCCGGAGTGTACCAGATTAGAAAGTCA
CCACGTAGCGAAAATCTGATCCCGAGCTCTGAGCGAGGATAAGTGGCCGT
AAAAGTCAAAACAAGCGAGATTTTGGTTTTCAGGATTTGTTTTCTATAAA
AACTGGTGTAAACGTATTTACATTATGGGGTGCCTTGTTTTGTATGTTAT
TTAACGCATGGGGTTATGTCATGTGTGCTCCGGGCAAAAACAATCGTTCT
TCGCGTCGCGATCCTCACACACACATCAAGCCAGCCCACACAACACATCT
GTTTTTTCTTTTTTGATTTGTTCATGTCGGTGGCTTTTTTTTTCTTCTTG
TTTGTTTTTCCGTCGTTTTTGTCGCAGGCAGCAGCGACGACAAGCGAAGA
AAAACAAAGGAGGACGCGCCGCCGCCCCTTCTAAGGGCTTCGGATAAAAA
TTTAAAAATGAGGGAGAATCGGACCGTGGCCTTCAGTGTTAGGGCCGTTC
GTTATACTCCTATTTAGTTTCCATTCTTCATCGGTTGAAGTAGAGAATTT
CGGTGGACAGAGAGGGACGCGCGCGTGCGCATAGCAGTCCATTTGCGATT
GTTGTGGGCGTTTTCTCTTCCTTCTCCAGGGTCGTAACTAAAGTCACGCT
GGGTCCTCGGCGCATCGTGGGATTGTGCGCCAAGGGGGGTATACCATAGG
TCAAAACAGGGCGGTTATTGTCAGAACAGGGCGGTTAATATCCTCCGTTA
AATCCCCGACAAATGACCTAGGCCCTCCGCGTTTGATTGAGTGATCATCC
TGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1643:18542..23444+

>mRNA_L-elsbetiae_contig1643.4370.1 ID=mRNA_L-elsbetiae_contig1643.4370.1|Name=mRNA_L-elsbetiae_contig1643.4370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig1643:18542..23444+ (Laminarionema elsbetiae ELsaHSoW15)
TTTACCGCGTTTCCAGGCAGCGAGAGCTGCAGAACTCGAGCCTGTGCCCA
CCTCCCCTCTAGCAAGCGACGTACTTGTCTGTCGGCCTGCCGAATCGAGG
TTTCGTGTTATTCTCCTTTTGTACACAACAGCAGTGTTCCAGCGAATGGG
AGAGACTTCGCACCCGCTACCTATCCTATCGTTTTCAAGTCCCAACCACT
TTTTTCTCGGTCGTCTGTCCGCAGGCGTTCCTCAAAGAGTTCCGGGGTAT
GCAGAGCAACATGTCGAGGATGGGTAATTTACCGCGTTTCCAGGCAGCGA
GAGCTGCAGAACTCGAGCCTGTGCCCACCTCCCCTCTAGCAAGCGACGTA
CTTGTCTGTCGGCCTGCCGAATCGAGGTTTCGTGTTATTCTCCTTTTGTA
CACAACAGCAGTGTTCCAGCGAATGGGAGAGACTTCGCACCCGCTACCTA
TCCTATCGTTTTCAAGTCCCAACCACTTTTTTCTCGGTCGTCTGTCCGCA
GGCGTTCCTCAAAGAGTTCCGGGGTATGCAGAGCAACATGTCGAGGATGG
GTAAAGGCCACGCCCTTTGATGGGCTCGGCGGGCCCCCCATCGAGCCGGG
AGCGGCACCGTCGATGAACAGAGGCCACGCCCTTTGATGGGCTCGGCGGG
CCCCCCATCGAGCCGGGAGCGGCACCGTCGATGAACAGGCAGCAGCGACG
ACAAGCGAAGAAAAACAAAGGAGGACGCGCCGCCGCCCCTTCTAAGGGCT
TCGGATAAGCAGCAGCGACGACAAGCGAAGAAAAACAAAGGAGGACGCGC
CGCCGCCCCTTCTAAGGGCTTCGGATAA
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