prot_L-elsbetiae_contig1643.4370.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1643.4370.1
Unique Nameprot_L-elsbetiae_contig1643.4370.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length138
Homology
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BLAST of mRNA_L-elsbetiae_contig1643.4370.1 vs. uniprot
Match: D8LN22_ECTSI (PFfh, plastid Ffh subunit of the signal recognition particle n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN22_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.850e-9
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0 
Query:   95 TPFDGLGGPPIEPGAAPSMNRQQRRQAKKNKGGRAAAPSKGFG 137
            +PF GLGG    PGAAPSMNRQQRRQ+KKNK GR+AAPSKGFG
Sbjct:  516 SPFQGLGGD-TAPGAAPSMNRQQRRQSKKNKAGRSAAPSKGFG 557
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1643.4370.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN22_ECTSI1.850e-979.07PFfh, plastid Ffh subunit of the signal recognitio... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1643contigL-elsbetiae_contig1643:18542..23088 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1643.4370.1mRNA_L-elsbetiae_contig1643.4370.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1643 18542..23444 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1643.4370.1 ID=prot_L-elsbetiae_contig1643.4370.1|Name=mRNA_L-elsbetiae_contig1643.4370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
FTAFPGSESCRTRACAHLPSSKRRTCLSACRIEVSCYSPFVHNSSVPANG
RDFAPATYPIVFKSQPLFSRSSVRRRSSKSSGVCRATCRGWVKATPFDGL
GGPPIEPGAAPSMNRQQRRQAKKNKGGRAAAPSKGFG*
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