mRNA_L-elsbetiae_contig16416.4361.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig16416.4361.1 vs. uniprot
Match: D7FNV4_ECTSI (Calcium channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNV4_ECTSI) HSP 1 Score: 370 bits (949), Expect = 2.450e-124 Identity = 186/241 (77.18%), Postives = 209/241 (86.72%), Query Frame = 1 Query: 28 RHILGAVAEIWVLICLNIVLFAWVGVILFAGTSEGEEKFPDLFEASWRLFVLFTTTNFPEIMMDALDQVRASIIYFAGFVILNVFFFAPLSLAMIFNVFRGGQSGIPRMEEEIRLESSAAAFALLDNRQTGQVSVADMGAFLLEVHSMRGVACREMSRLQDLMEEAGETTPEGGPSLNLQDFKDAVSVMDRSLRHAEWITEVQWYFPRLYQSPGFRRLTRLVKHQRVTLWPGGLGLSRFSV 750 RHILGAVAEIWVLI NI LFAWVGVILF+GT EG ++F DL EASWRLFVLFTTTNFP IMM ALDQVRA+II+FA FVILNVFF APLSLA IFNVFRGGQSGIP+MEEEIRL S+AAAF LLD+RQ+GQV A+MGAFLLE+HSMRGVA RE+SRLQ L++E G TPE PSL LQDF+DAV V+DRS HAEWITE+QWY+P+LYQSPGFRRLTR+VKH+RVT WPG G +FS+ Sbjct: 13 RHILGAVAEIWVLILFNIGLFAWVGVILFSGTEEGGKQFSDLCEASWRLFVLFTTTNFPTIMMTALDQVRATIIFFAFFVILNVFFLAPLSLAFIFNVFRGGQSGIPQMEEEIRLRSTAAAFTLLDDRQSGQVLSANMGAFLLELHSMRGVASRELSRLQGLIDEVGARTPEEAPSLTLQDFQDAVDVLDRSREHAEWITEIQWYYPQLYQSPGFRRLTRIVKHKRVTFWPGCCGTPQFSM 253
BLAST of mRNA_L-elsbetiae_contig16416.4361.1 vs. uniprot
Match: A0A6H5KIA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA0_9PHAE) HSP 1 Score: 373 bits (958), Expect = 1.010e-119 Identity = 187/241 (77.59%), Postives = 212/241 (87.97%), Query Frame = 1 Query: 28 RHILGAVAEIWVLICLNIVLFAWVGVILFAGTSEGEEKFPDLFEASWRLFVLFTTTNFPEIMMDALDQVRASIIYFAGFVILNVFFFAPLSLAMIFNVFRGGQSGIPRMEEEIRLESSAAAFALLDNRQTGQVSVADMGAFLLEVHSMRGVACREMSRLQDLMEEAGETTPEGGPSLNLQDFKDAVSVMDRSLRHAEWITEVQWYFPRLYQSPGFRRLTRLVKHQRVTLWPGGLGLSRFSV 750 RHILGAVAEIWVLI NI LFAWVGVILF+GT EG E+F DL EASWRLF+LFTTTNFP IMM ALDQVRA+I++FA FVILNVFF APLSLA IFNVFRGGQSGIP+MEEEIRL S+AAAF LLD+RQ+GQVS A+MGAFLLE+HSMRGVA RE+SRLQ+L++EAG TPE PSL LQDF+DAV VM+RS HAEWITE+QWY+P+LYQS GFRRLTR+VKH+RVTLWPG G +FS+ Sbjct: 300 RHILGAVAEIWVLILFNIGLFAWVGVILFSGTEEGGEQFSDLCEASWRLFILFTTTNFPTIMMTALDQVRATIVFFAFFVILNVFFLAPLSLAFIFNVFRGGQSGIPQMEEEIRLRSTAAAFTLLDDRQSGQVSSANMGAFLLELHSMRGVASRELSRLQELIDEAGARTPEEAPSLTLQDFQDAVGVMERSREHAEWITEIQWYYPQLYQSHGFRRLTRIVKHKRVTLWPGFCGTRQFSM 540
BLAST of mRNA_L-elsbetiae_contig16416.4361.1 vs. uniprot
Match: W4GNX5_9STRA (EF-hand domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GNX5_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 9.980e-18 Identity = 49/136 (36.03%), Postives = 79/136 (58.09%), Query Frame = 1 Query: 16 KHNRRHILGAVAEIWVLICLN---IVLFAWVGVILFAGTSEGEEKFPDLFEASWRLFVLFTTTNFPEIMMDALDQVRASIIYFAGFVILNVFFFAPLSLAMIFNVFRGGQSGIPRMEEEIRLESSAAAFALLDNRQ 414 + + R IL ++EI+ ++ L I+ +AW+ ++LF+GT EG+ + P++ EASW +L TT+NFP+IMM A + R + ++F F+ +FF + LA+IFN F + IR E AF LL +Q Sbjct: 68 RRSLRKILLVLSEIYSILSLVFVFILFYAWMSIVLFSGTPEGDAQMPNMIEASWHFLILLTTSNFPDIMMPAYNANRVTCLFFMLFICFGLFFLMNIVLAVIFNNFARYTEAEASLRHAIRKEKLTQAFQLLATKQ 203
BLAST of mRNA_L-elsbetiae_contig16416.4361.1 vs. uniprot
Match: A0A1V9YH00_9STRA (Two-pore ion channel n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YH00_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.690e-17 Identity = 67/264 (25.38%), Postives = 118/264 (44.70%), Query Frame = 1 Query: 34 ILGAVAEIWVLICLNIVLFAWVGVILFAGTSEGEEKF--------------PDLFEASWRLFVLFTTTNFPEIMMDALDQVRASIIYFAGFVILNVFFFAPLSLAMIFNVFRGGQSGIPRMEEEIRLESSAAAFALL-------------------------DNRQTGQVSVADMGAFLLEVHSMRGVACREMSRLQDLMEEAGETTPEGGPSLNLQDFKDAVSVMDRSLR-HAEWITEVQWYFPRLYQSPGFRRLTRLVKHQR 705 +L V + L+ + + FAWV ILF ++EG ++ P +++A W LFVL TT NFP++ M A + RASI++FA FV+ +FF + LA+I+ F R RL AF LL +R + + A ++++ + + + +++ L + +G L+ +F +V+D++L + E+Q ++P +Y S GF L+ +V+H R Sbjct: 190 VLREVHHVLTLLIVYVAFFAWVATILFRQSTEGCVEYLLRHSHRIVGSLYMPTIYDAGWNLFVLLTTANFPDVFMPAYTERRASILFFAVFVVFGLFFLLNVLLAVIYQTFSSHVVAYKRARAATRLLKLQRAFELLVIVPKAQVAQSFSPTKGPHRRFDEWQSRSNASIPLDTSLALFAQLNAYKNIRYIKQCKMRLLFD---ILDTDGDERLSWPEFAQICAVLDKALTTRPRPLPEIQNWWPIVYYSSGFTALSHIVRHPR 450
BLAST of mRNA_L-elsbetiae_contig16416.4361.1 vs. uniprot
Match: A0A024TGM3_9STRA (EF-hand domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TGM3_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 7.590e-16 Identity = 67/249 (26.91%), Postives = 120/249 (48.19%), Query Frame = 1 Query: 16 KHNRRHILGAVAEIWVLICLN---IVLFAWVGVILFAGTSEGEEKFPDLFEASWRLFVLFTTTNFPEIMMDALDQVRASIIYFAGFVILNVFFFAPLSLAMIFNVFRGGQSGIPRMEEEIRLESSAAAFALLDNRQTGQVSVADMGAFLLEVHSMRGVA-------------CREMSRLQD--LMEEAGETTPEGGPSLNLQDFKDAVSVMDRSLRHAEWI--TEVQWYFPRLYQSPGFRRLTRLVKHQ 702 + + R IL ++EI+ ++ L I+ +AW+ ++LF+GT EG+ + P++ A W +VL TT+NFP+IMM A + RA+ ++F F+ +FF + LA+IFN F ++ IR AF LL T F + S G+A C+ +S +Q + + G + L +F V++ +L A+ + +EV+ + P + + + L R+++ Q Sbjct: 193 RRSLRKILLVLSEIYSILSLVFVFILFYAWMSIVLFSGTPEGDAQMPNMTTACWHFYVLLTTSNFPDIMMPAYNANRATCLFFMLFICFGLFFLMNVVLAVIFNNFARYTEAETKLRHGIRETKLTQAFHLLATHTT---------RFSRDGASADGIALDVCVRMFDELNRCKHVSHIQKAKMRQVFAALDTNGDNQIQLGEFLQTCDVLE-TLLFADDVFQSEVEVWCPAVVHASWYVALDRVIRSQ 431
BLAST of mRNA_L-elsbetiae_contig16416.4361.1 vs. uniprot
Match: T0PXW7_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PXW7_SAPDV) HSP 1 Score: 79.7 bits (195), Expect = 2.330e-13 Identity = 70/260 (26.92%), Postives = 106/260 (40.77%), Query Frame = 1 Query: 34 ILGAVAEIWVLICLNIVLFAWVGVILFAGTSEGEEKFPDLFEASWRLFVLFTTTNFPEIMMDALDQVRASIIYFAGFVILNVFFFAPLSLAMIFNVFRGGQSGIPRMEEEIRLESSAAAFALLDNRQTGQVSVADMGAFLLEVHSMRGVACREMSRLQDLMEEAGETTPEGG--------------PSLNLQDFKDAVSVMDR---------------SLRHAEWIT------EVQWYFPRLYQSPGFRRLTRLVKHQRV 708 +L V VLI + + +WV +LF T+EG +++EASW LFVL TT NFP++ M A R+S+++F F+ +FF + LA+ + F + R +++ AF LL + GQ + + + L H R D G P+ P L K + +D S+ H T E+Q Y PRLY S F++L RLV R+ Sbjct: 177 VLNEVQHALVLIFVYVAFCSWVATVLFHHTTEGTLYLGNIYEASWNLFVLLTTANFPDVFMPAYSTQRSSVLFFVFFLCFGLFFLLNVVLAVTYTAFTRQLAAFKRKRRRVQVSKLQVAFQLLCHVD-GQRAPTNYSSTELWAH-----------RHDDWTPPIGAAIPKATCLRLFETLNHYKNIPYLKHDKMKTLFATLDIAQDDQLSWPEFARLCSVFHTALATRTLPPPELQRYCPRLYYSAPFQKLARLVCDARL 424
BLAST of mRNA_L-elsbetiae_contig16416.4361.1 vs. uniprot
Match: Q05KM6_PHYPA (Putative two-pore calcium channel n=2 Tax=Physcomitrium patens TaxID=3218 RepID=Q05KM6_PHYPA) HSP 1 Score: 77.4 bits (189), Expect = 1.460e-12 Identity = 51/221 (23.08%), Postives = 105/221 (47.51%), Query Frame = 1 Query: 49 AEIWVLICLNIVLFAWVGVILFAGTSEGEEKFPDLFEASWRLFVLFTTTNFPEIMMDALDQVRASIIYFAGFVILNVFFFAPLSLAMIFNVFRGGQSGIPRMEEEIRLESSAAAFALLDNRQTGQVSVADMGAFLLEVHSMRG---VACREMSRLQDLMEEAGETTPEGGPSLNLQDFKDAVSVMDRSLRHAEWITEVQWYFPRLYQSPGFRRLTRLVKHQ 702 A+I L+ L ++ +W+ ++F T +G+ F +++ +LFTT+N P++ +DA R ++F ++++ V+FF L LA++++ F+G + + E R + AAF LLD ++ G + E++ R +A +M + ++++G+ + + D +A+S+ W Y+P Y S + V+ Q Sbjct: 234 ADIAALLGLYLLFSSWLAYVMFEDTVQGKTTFTSYSTTLYQMAILFTTSNSPDVWLDAYKSSRFYSLFFILYILIGVYFFMNLVLAVVYDSFKGQLAKLLLNEANERQQVLGAAFNLLDEQKRGFLDKLQCARLFKELNKYRSLPKIADDDMEAVFCALDDSGDFRID---RVEFNDLCNAISLKFDKADEPSWFE----YYPAFYNSAALNAIKAFVRSQ 447
BLAST of mRNA_L-elsbetiae_contig16416.4361.1 vs. uniprot
Match: UPI00201A8D4D (two pore calcium channel protein 1A isoform X1 n=4 Tax=Ricinus communis TaxID=3988 RepID=UPI00201A8D4D) HSP 1 Score: 76.6 bits (187), Expect = 2.650e-12 Identity = 57/223 (25.56%), Postives = 100/223 (44.84%), Query Frame = 1 Query: 37 LGAVAEIWVLICLNIVLFAWVGVILFAGTSEGEEKFPDLFEASWRLFVLFTTTNFPEIMMDALDQVRASIIYFAGFVILNVFFFAPLSLAMIFNVFRGGQSGIPRMEEEIRLESSAAAFALLDNRQTGQVSVADMGAFLLEVHSMRGVACREMSRLQDLMEEAGETTPEGGPSLNLQDFKDAVSVMDRSLRHAEWITEVQWYFPRLYQSPGFRRLTRLVKHQR 705 LG I + L +V +WV I+F T +GE F + + +F+LFTT+N P++ + A R ++F +V+L V+F L LA +++ F+G + + I+ AF L+D G V+ L E++ R + + + EE +T ++L +F D V+ + + I YFP +Y SP L + ++ Sbjct: 224 LGTYLNILAVCLLFLVFSSWVAYIMFEDTQQGELVFTSYGKTLYEMFILFTTSNNPDVWIPAYKASRWYCLFFVLYVLLAVYFITSLILAAVYDSFKGQLAKQVSQADRIKKSMLVKAFNLIDEYNVGYVNKDQCFRLLGELNRFRTLPKILKEEFEYIFEELDDTRDF---KIDLNEFGDLCDVIAVRFQKDD-IPSCFEYFPSIYHSPFSENLKAFARSRK 442
BLAST of mRNA_L-elsbetiae_contig16416.4361.1 vs. uniprot
Match: A0A328D0I1_9ASTE (EF-hand domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328D0I1_9ASTE) HSP 1 Score: 73.6 bits (179), Expect = 2.930e-11 Identity = 52/220 (23.64%), Postives = 102/220 (46.36%), Query Frame = 1 Query: 37 LGAVAEIWVLICLNIVLFAWVGVILFAGTSEGEEKFPDLFEASWRLFVLFTTTNFPEIMMDALDQVRASIIYFAGFVILNVFFFAPLSLAMIFNVFRGGQSGIPRMEEEIRLESSAAAFALLDNRQTGQVSVADMGAFLLEVHSMRGVACREMSRLQDLMEEAGETTPEGGPSLNLQDFKDAVSVMDRSLRHAEWITEVQWYFPRLYQSPGFRRLTRLVK 696 LG + VL L ++ +W+G ++F T +G+ F ++FVLFTT+N P++ + A + R ++F +V+L V+F L LA++++ F+ + ++ +RL AF+L+D G ++ E++ R + + + +E +T ++L +F D + + E + + FP LY S +L V+ Sbjct: 215 LGTYLNVMVLSVLFLLFCSWLGYVIFEDTQQGKTVFSSYSATLSQMFVLFTTSNNPDVWIPAYKESRWYCLFFVLYVLLGVYFVTNLILAVVYDSFKSELAKRVAEKDRVRLRILRKAFSLVDYHSCGYLNKEQCIHLFEELNKYRSLPKISRDDFELIFDELDDTRDF---KIDLDEFFDLCKAISLRFQEEESLPIFET-FPNLYHSTTSEKLRNFVR 430
BLAST of mRNA_L-elsbetiae_contig16416.4361.1 vs. uniprot
Match: UPI00125E8497 (two pore calcium channel protein 1A-like isoform X1 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI00125E8497) HSP 1 Score: 73.6 bits (179), Expect = 2.940e-11 Identity = 48/219 (21.92%), Postives = 106/219 (48.40%), Query Frame = 1 Query: 40 GAVAEIWVLICLNIVLFAWVGVILFAGTSEGEEKFPDLFEASWRLFVLFTTTNFPEIMMDALDQVRASIIYFAGFVILNVFFFAPLSLAMIFNVFRGGQSGIPRMEEEIRLESSAAAFALLDNRQTGQVSVADMGAFLLEVHSMRGVACREMSRLQDLMEEAGETTPEGGPSLNLQDFKDAVSVMDRSLRHAEWITEVQWYFPRLYQSPGFRRLTRLVK 696 G + VL L ++ +W+G ++F T +G+ F + +F+LFTT+N P++ + A + R ++F +V+L V+F L LA++++ F+ + ++ +RL + AF+L+D+ G ++ E+++ R + + + +E +T ++L +F D + + + + + + FP +Y S +L + V+ Sbjct: 223 GTYLNVMVLSALFLLFSSWLGYVIFEDTEQGKTVFTSFGITLYEMFILFTTSNNPDVWIPAYKESRWYCLFFVLYVLLGVYFVTNLILAVVYDSFKSELAKQVSEKDRVRLRTLKKAFSLVDDNNCGFLNKEQCIRLFEELNNYRSLPKISRDDFELIFDELDDTRDF---KIDLDEFFDLCNAISLRFQKEDSLPVFET-FPYVYHSTTSEKLRKFVR 437 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16416.4361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig16416.4361.1 >prot_L-elsbetiae_contig16416.4361.1 ID=prot_L-elsbetiae_contig16416.4361.1|Name=mRNA_L-elsbetiae_contig16416.4361.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=250bp MYLTPKHNRRHILGAVAEIWVLICLNIVLFAWVGVILFAGTSEGEEKFPDback to top mRNA from alignment at L-elsbetiae_contig16416:131..3430+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig16416.4361.1 ID=mRNA_L-elsbetiae_contig16416.4361.1|Name=mRNA_L-elsbetiae_contig16416.4361.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3300bp|location=Sequence derived from alignment at L-elsbetiae_contig16416:131..3430+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig16416:131..3430+ >mRNA_L-elsbetiae_contig16416.4361.1 ID=mRNA_L-elsbetiae_contig16416.4361.1|Name=mRNA_L-elsbetiae_contig16416.4361.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1500bp|location=Sequence derived from alignment at L-elsbetiae_contig16416:131..3430+ (Laminarionema elsbetiae ELsaHSoW15)back to top |