mRNA_L-elsbetiae_contig1640.4351.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1640.4351.1
Unique NamemRNA_L-elsbetiae_contig1640.4351.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1640.4351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1640contigL-elsbetiae_contig1640:20801..22499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1061
Cds size756
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1640.4351.1prot_L-elsbetiae_contig1640.4351.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1640 20844..21599 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.773488-UTR-L-elsbetiae_contig1640:20800..208431622815677.773488-UTR-L-elsbetiae_contig1640:20800..20843Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1640 20801..20843 +
1691683032.1615076-UTR-L-elsbetiae_contig1640:20800..208431691683032.1615076-UTR-L-elsbetiae_contig1640:20800..20843Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1640 20801..20843 +
1622815677.79961-UTR-L-elsbetiae_contig1640:21599..216421622815677.79961-UTR-L-elsbetiae_contig1640:21599..21642Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1640 21600..21642 +
1691683032.1809826-UTR-L-elsbetiae_contig1640:21599..216421691683032.1809826-UTR-L-elsbetiae_contig1640:21599..21642Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1640 21600..21642 +
1622815677.8105423-UTR-L-elsbetiae_contig1640:22280..224991622815677.8105423-UTR-L-elsbetiae_contig1640:22280..22499Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1640 22281..22499 +
1691683032.1891348-UTR-L-elsbetiae_contig1640:22280..224991691683032.1891348-UTR-L-elsbetiae_contig1640:22280..22499Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1640 22281..22499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.7862425-CDS-L-elsbetiae_contig1640:20843..215991622815677.7862425-CDS-L-elsbetiae_contig1640:20843..21599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1640 20844..21599 +
1691683032.1727874-CDS-L-elsbetiae_contig1640:20843..215991691683032.1727874-CDS-L-elsbetiae_contig1640:20843..21599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1640 20844..21599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1640.4351.1

>prot_L-elsbetiae_contig1640.4351.1 ID=prot_L-elsbetiae_contig1640.4351.1|Name=mRNA_L-elsbetiae_contig1640.4351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=252bp
MVNVKSKKCTHHGGCTKVPSYGNAGGKKEYCRDHAKDEMVDVKSKRCTHH
GCTKVPSYGKAGGKREYCNGHAKDGMVDMKRKKCTHGGCTSRPSDGKAGD
KAGYYCDHAEDAMANVVEKRCIVHGCTTMANSAAEDTGTRNICIRHAGEG
MIHLAGRPGRGSERSGGPNGTGARASGSTASRASCRGQRGSRVPLPSAAD
ASSGESRKANKRSADSANLTPVRVKSETIDKEVDDKNAAACPKPDTAVVK
R*
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mRNA from alignment at L-elsbetiae_contig1640:20801..22499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1640.4351.1 ID=mRNA_L-elsbetiae_contig1640.4351.1|Name=mRNA_L-elsbetiae_contig1640.4351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1699bp|location=Sequence derived from alignment at L-elsbetiae_contig1640:20801..22499+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCGGCAAGGCGGAGAACTGCCGTGGCCATTCTAAGGGCGGGATGGTGA
ACGTGAAGAGCAAAAAATGCACCCATCACGGCGGTTGCACCAAGGTGCCG
TCATACGGCAATGCTGGCGGCAAGAAAGAGTACTGCCGTGACCATGCTAA
GGATGAGATGGTGGACGTGAAGAGCAAGAGATGCACCCATCACGGTTGCA
CCAAGGTGCCGTCATACGGCAAGGCTGGTGGCAAGAGAGAGTACTGCAAT
GGCCATGCCAAGGACGGGATGGTGGACATGAAGAGGAAGAAATGCACTCA
CGGCGGTTGCACCAGTCGGCCGTCAGACGGCAAGGCTGGCGACAAGGCGG
GGTACTACTGTGATCATGCGGAGGATGCGATGGCGAACGTCGTCGAAAAG
AGATGTATCGTTCATGGGTGCACCACAATGGCCAACAGCGCCGCAGAAGA
TACTGGCACCCGGAACATTTGTATACGGCATGCTGGAGAAGGCATGATCC
ATCTTGCTGGCCGGCCCGGGAGAGGAAGTGAAAGAAGCGGTGGACCAAAT
GGCACGGGAGCAAGGGCTAGTGGCAGCACTGCCAGTCGTGCTAGTTGCCG
TGGACAGCGGGGGAGCCGCGTCCCTTTGCCCTCCGCCGCAGATGCTTCCT
CCGGCGAGAGCAGGAAGGCCAACAAGCGATCTGCGGATAGCGCGAACTTA
ACCCCAGTCCGGGTGAAGAGCGAGACGATCGACAAGGAGGTCGACGACAA
GAATGCTGCGGCATGCCCGAAGCCGGACACCGCTGTGGTGAAGAGATAAG
TTATGGATGTGCCTTGCAAGACGGAGCCGACGGGAGCTGCAGGTGCATTG
AAATCAAGTAGTCGGTGTCTCGGAGTGCTGTCGTTTTTTTCTGGTTGATG
TTAGAAGAGAGGCTACGATTGAAGGCAAAACCCAGCTACAGTAGTACCAC
GCGCAACGATCATAGACGCCTGTATACACCGCCGCTGCAGCGTTGAATGT
CGAACATGTGCAGTAACGGCGCGGCGAGGCCGGTTTGGAAGTCTTACTTA
CCTCGATCTGCTGCTCGTTATGCTCGCACTGGAGACCCACGTGCTATGAT
TCAATATCGTACAGAGGAAGGGCGTTGCACTCACTTCGTGTTTGATTTTT
GTTTTTTGTCACCTACCCGCGTGTATCTCAATGAAGCTGCCCCCTATATG
ACCTGCTTGTATTCAGTCTGTTGTCGTCCACCATCGGGGCAAGTTTTGCT
TTGTCACCCGTGTACGACCGACAGAACCGACGTTGCTGGACCGTGCAGTA
CTCTGTGCGACACAGGGACATGTGGTGTTGTCACGCTTGGCACATCACAG
TTACATCATACGCCCCCCCCCCCCCCGGCTTTGTTTGTTTTACATCTATC
GTGACCTCATTCGCGTGCCTTATCTATTTCTCGTCTGGATGTGGCTCTTG
TGCGCCTGCCCCTTTCTCCAATCAACACAGACCATCCAGGTGCAGCGAGG
ACGAAGCGGAGGAAGACCGCGGGGGGGAAGGCGCGAGGTTCCTGATATCG
CACCAACAGCAGCAGCACCACACCATGGTGCACGCAAAGAACCGTAGTGG
GACAGGGTGGCCATGAGCGACTGCAAGCAGCGAAACTCCTGCCAATGTGG
TGCTGGATTTATACAGTTAGTCTACTTTTGTTGACCGGTATGGTCTGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1640:20801..22499+

>mRNA_L-elsbetiae_contig1640.4351.1 ID=mRNA_L-elsbetiae_contig1640.4351.1|Name=mRNA_L-elsbetiae_contig1640.4351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1512bp|location=Sequence derived from alignment at L-elsbetiae_contig1640:20801..22499+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAACGTGAAGAGCAAAAAATGCACCCATCACGGCGGTTGCACCAA
GGTGCCGTCATACGGCAATGCTGGCGGCAAGAAAGAGTACTGCCGTGACC
ATGCTAAGGATGAGATGGTGGACGTGAAGAGCAAGAGATGCACCCATCAC
GGTTGCACCAAGGTGCCGTCATACGGCAAGGCTGGTGGCAAGAGAGAGTA
CTGCAATGGCCATGCCAAGGACGGGATGGTGGACATGAAGAGGAAGAAAT
GCACTCACGGCGGTTGCACCAGTCGGCCGTCAGACGGCAAGGCTGGCGAC
AAGGCGGGGTACTACTGTGATCATGCGGAGGATGCGATGGCGAACGTCGT
CGAAAAGAGATGTATCGTTCATGGGTGCACCACAATGGCCAACAGCGCCG
CAGAAGATACTGGCACCCGGAACATTTGTATACGGCATGCTGGAGAAGGC
ATGATCCATCTTGCTGGCCGGCCCGGGAGAGGAAGTGAAAGAAGCGGTGG
ACCAAATGGCACGGGAGCAAGGGCTAGTGGCAGCACTGCCAGTCGTGCTA
GTTGCCGTGGACAGCGGGGGAGCCGCGTCCCTTTGCCCTCCGCCGCAGAT
GCTTCCTCCGGCGAGAGCAGGAAGGCCAACAAGCGATCTGCGGATAGCGC
GAACTTAACCCCAGTCCGGGTGAAGAGCGAGACGATCGACAAGGAGGTCG
ACGACAAGAATGCTGCGGCATGCCCGAAGCCGGACACCGCTGTGGTGAAG
AGATAAATGGTGAACGTGAAGAGCAAAAAATGCACCCATCACGGCGGTTG
CACCAAGGTGCCGTCATACGGCAATGCTGGCGGCAAGAAAGAGTACTGCC
GTGACCATGCTAAGGATGAGATGGTGGACGTGAAGAGCAAGAGATGCACC
CATCACGGTTGCACCAAGGTGCCGTCATACGGCAAGGCTGGTGGCAAGAG
AGAGTACTGCAATGGCCATGCCAAGGACGGGATGGTGGACATGAAGAGGA
AGAAATGCACTCACGGCGGTTGCACCAGTCGGCCGTCAGACGGCAAGGCT
GGCGACAAGGCGGGGTACTACTGTGATCATGCGGAGGATGCGATGGCGAA
CGTCGTCGAAAAGAGATGTATCGTTCATGGGTGCACCACAATGGCCAACA
GCGCCGCAGAAGATACTGGCACCCGGAACATTTGTATACGGCATGCTGGA
GAAGGCATGATCCATCTTGCTGGCCGGCCCGGGAGAGGAAGTGAAAGAAG
CGGTGGACCAAATGGCACGGGAGCAAGGGCTAGTGGCAGCACTGCCAGTC
GTGCTAGTTGCCGTGGACAGCGGGGGAGCCGCGTCCCTTTGCCCTCCGCC
GCAGATGCTTCCTCCGGCGAGAGCAGGAAGGCCAACAAGCGATCTGCGGA
TAGCGCGAACTTAACCCCAGTCCGGGTGAAGAGCGAGACGATCGACAAGG
AGGTCGACGACAAGAATGCTGCGGCATGCCCGAAGCCGGACACCGCTGTG
GTGAAGAGATAA
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