mRNA_L-elsbetiae_contig164.4347.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig164.4347.1
Unique NamemRNA_L-elsbetiae_contig164.4347.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig164.4347.1 vs. uniprot
Match: D7FR34_ECTSI (4HBT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR34_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.040e-6
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 3 
Query:    3 PNVYDVDRILAKTPLLKNDNAFHDTLNSES 92
            PNV+DVD+IL KTPLL+NDNAFHDTLN++S
Sbjct:   90 PNVHDVDKILVKTPLLRNDNAFHDTLNNDS 119
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig164.4347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FR34_ECTSI1.040e-680.004HBT domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig164contigL-elsbetiae_contig164:37957..38577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size621
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig164.4347.1prot_L-elsbetiae_contig164.4347.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig164 38106..38483 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.7945678-UTR-L-elsbetiae_contig164:37956..381051622815676.7945678-UTR-L-elsbetiae_contig164:37956..38105Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig164 37957..38105 +
1691683031.395343-UTR-L-elsbetiae_contig164:37956..381051691683031.395343-UTR-L-elsbetiae_contig164:37956..38105Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig164 37957..38105 +
1622815676.8203523-UTR-L-elsbetiae_contig164:38483..385771622815676.8203523-UTR-L-elsbetiae_contig164:38483..38577Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig164 38484..38577 +
1691683031.4170213-UTR-L-elsbetiae_contig164:38483..385771691683031.4170213-UTR-L-elsbetiae_contig164:38483..38577Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig164 38484..38577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.8093607-CDS-L-elsbetiae_contig164:38105..384831622815676.8093607-CDS-L-elsbetiae_contig164:38105..38483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig164 38106..38483 +
1691683031.4086547-CDS-L-elsbetiae_contig164:38105..384831691683031.4086547-CDS-L-elsbetiae_contig164:38105..38483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig164 38106..38483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig164.4347.1

>prot_L-elsbetiae_contig164.4347.1 ID=prot_L-elsbetiae_contig164.4347.1|Name=mRNA_L-elsbetiae_contig164.4347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MRRRGCSRAHCMCWWKRARSRVNDVQKAMSAALHTATTALKKGARSVGRH
GISTALFLFPGRYALRAVVAVVTPTHAPPPLRNFFFTFAACTARCGIFRA
EGWLLCDPPVCIEVAFFGVGLEPWP*
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mRNA from alignment at L-elsbetiae_contig164:37957..38577+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig164.4347.1 ID=mRNA_L-elsbetiae_contig164.4347.1|Name=mRNA_L-elsbetiae_contig164.4347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=621bp|location=Sequence derived from alignment at L-elsbetiae_contig164:37957..38577+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCGAACGTTTACGACGTGGACAGAATTCTTGCGAAGACACCTTTGCTC
AAGAACGACAACGCCTTCCACGATACCCTGAACAGTGAGTCTAGGTGGCG
GTCGCCTTAAGAGTTCCCGTACGCTGGCAGGCACGGCTTAGTTTGAGCAA
TGCGCCGCCGCGGTTGCAGCCGAGCGCACTGCATGTGCTGGTGGAAACGC
GCGCGCTCTCGGGTCAATGACGTGCAAAAGGCCATGTCTGCTGCGCTGCA
TACGGCCACCACAGCCTTGAAAAAGGGAGCGCGCTCTGTAGGGAGACACG
GCATTTCAACGGCTTTGTTTTTATTTCCAGGTAGGTATGCGCTGCGTGCC
GTGGTCGCAGTAGTCACTCCTACTCACGCCCCCCCCCCTTTACGCAATTT
TTTTTTCACGTTCGCTGCGTGCACAGCTCGTTGCGGGATTTTTCGTGCAG
AGGGGTGGTTACTATGCGACCCACCCGTGTGTATCGAGGTGGCTTTTTTT
GGTGTCGGGCTGGAACCATGGCCTTGATGAATGCCAGAATGGGAGAGCTC
CACGACACGGATTTCGATATCCGTTGACCTCCCGGACCCCCCCCCCCCCC
TATCTCCTTGATACCCCGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig164:37957..38577+

>mRNA_L-elsbetiae_contig164.4347.1 ID=mRNA_L-elsbetiae_contig164.4347.1|Name=mRNA_L-elsbetiae_contig164.4347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig164:37957..38577+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCCGCCGCGGTTGCAGCCGAGCGCACTGCATGTGCTGGTGGAAACG
CGCGCGCTCTCGGGTCAATGACGTGCAAAAGGCCATGTCTGCTGCGCTGC
ATACGGCCACCACAGCCTTGAAAAAGGGAGCGCGCTCTGTAGGGAGACAC
GGCATTTCAACGGCTTTGTTTTTATTTCCAGGTAGGTATGCGCTGCGTGC
CGTGGTCGCAGTAGTCACTCCTACTCACGCCCCCCCCCCTTTACGCAATT
TTTTTTTCACGTTCGCTGCGTGCACAGCTCGTTGCGGGATTTTTCGTGCA
GAGGGGTGGTTACTATGCGACCCACCCGTGTGTATCGAGGTGGCTTTTTT
TGGTGTCGGGCTGGAACCATGGCCTTGAATGCGCCGCCGCGGTTGCAGCC
GAGCGCACTGCATGTGCTGGTGGAAACGCGCGCGCTCTCGGGTCAATGAC
GTGCAAAAGGCCATGTCTGCTGCGCTGCATACGGCCACCACAGCCTTGAA
AAAGGGAGCGCGCTCTGTAGGGAGACACGGCATTTCAACGGCTTTGTTTT
TATTTCCAGGTAGGTATGCGCTGCGTGCCGTGGTCGCAGTAGTCACTCCT
ACTCACGCCCCCCCCCCTTTACGCAATTTTTTTTTCACGTTCGCTGCGTG
CACAGCTCGTTGCGGGATTTTTCGTGCAGAGGGGTGGTTACTATGCGACC
CACCCGTGTGTATCGAGGTGGCTTTTTTTGGTGTCGGGCTGGAACCATGG
CCTTGA
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