mRNA_L-elsbetiae_contig16392.4342.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig16392.4342.1 vs. uniprot
Match: A0A6H5LAP0_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAP0_9PHAE) HSP 1 Score: 163 bits (412), Expect = 5.030e-44 Identity = 91/190 (47.89%), Postives = 118/190 (62.11%), Query Frame = 1 Query: 1 MLRFQPNEREIFSVALTASSQDTEAALGQRRSEMDQAWRRIDEGWKDLQQRMAEIGITKASDANEGMVQLNVGGSCVNVRRSVLDGKQGSSSSGWTLANLFEARWDKRVPVDKEGRYVLDESPIAVKHLIHALLTGPQAGEKRSQESGAPLIAVDEEP-FLPFVSHALGLSD--STVMAAVTGGSTVLGP 561 MLR Q NE++ FS L SS+ EAAL QRR EMD W IDEGW+ L++RM E+GITK ++ EG+V+LNVGG + RRSVLD + W L NLFEA WDKRVP D +G VLDESP VK L+H LLT + + +G A +E+P L + + LGLS + V ++ GG+T+ P Sbjct: 1 MLRCQSNEKKTFSATLAVSSRAMEAALSQRRLEMDHEWDSIDEGWQTLRERMTEVGITKPLESKEGIVKLNVGGLLLAFRRSVLDSEGKQQPPTWALGNLFEAEWDKRVPRDSDGHIVLDESPTCVKQLVHRLLTASSSSKATVGRAGD--FARNEDPALLHYTAGVLGLSGCLAPVGMSIQGGTTIFEP 188
BLAST of mRNA_L-elsbetiae_contig16392.4342.1 vs. uniprot
Match: A0A6H5L232_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L232_9PHAE) HSP 1 Score: 153 bits (387), Expect = 1.130e-40 Identity = 90/189 (47.62%), Postives = 118/189 (62.43%), Query Frame = 1 Query: 1 MLRFQPNEREIFSVALTASSQDTEAALGQRRSEMDQAWRRIDEGWKDLQQRMAEIGITKASDANEGMVQLNVGGSCVNVRRSVLDGKQGSSSSGWTLANLFEARWDKRVPVDKEGRYVLDESPIAVKHLIHALL--TGPQAGEKRSQESGAPLIAVDEEPFLPFVSHALGLSDSTVMAA--VTGGSTVL 555 M R NE + FS +TA S++ EAALGQRR M QAW ++ GW +L Q + GITK + EGM++LNVGGS + RR VLDGK+ S++ W L NLFE+ WD R+P D +GR VLD+SP VK LIH+L+ +G G E+ AP DE +LP V+ ALGLS + V GG+T+L Sbjct: 1 MSRCHMNEDDTFSATVTAYSKEMEAALGQRRKGMSQAWEDVERGWHELNQCRIDAGITKPFGSQEGMLRLNVGGSHLRFRRCVLDGKKEPSAT-WALGNLFESVWDDRLPRDSDGRIVLDKSPACVKDLIHSLIESSGAAPGSLPRGETLAP----DEMAYLPHVARALGLSAYIPLQGMEVVGGTTIL 184
BLAST of mRNA_L-elsbetiae_contig16392.4342.1 vs. uniprot
Match: D7FIX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX9_ECTSI) HSP 1 Score: 139 bits (349), Expect = 3.900e-38 Identity = 83/194 (42.78%), Postives = 111/194 (57.22%), Query Frame = 1 Query: 1 MLRFQPNEREIFSVALTASSQDTEAALGQRRSEMDQAWRRIDEGWKDLQQRMAEIGITKASDANEGMVQLNVGGSCVNVRRSVLD----GKQGSSSSGWTLANLFEARWDKRVPVDKEGRYVLDESPIAVKHLIHALLTGPQAGEKRSQESGAPLIAVDEE-PFLPFVSHALGLSDSTV--MAAVTGGSTVLGP 561 MLRF NE++ FS + A + +TEAAL QR L++RM ++GIT D+ +G+ +LNVGGS V+ RRSVL GKQ S W L NLFEA WDKRVP D +GR VLDESP VKHL+H LLT E + G +A D++ L + + LGLS V + ++ GG+++ P Sbjct: 1 MLRFHSNEKKSFSATMEAFALETEAALAQRWQXXXXXXXXXXXXXXXLRERMTQVGITTPLDSKKGIDKLNVGGSLVSFRRSVLSTEAGGKQQQQPSTWALENLFEAEWDKRVPGDSDGRIVLDESPTCVKHLVHGLLTRSSLAEDTAAREGE--VACDDKLDLLDYTARVLGLSGRLVPVLMSIIGGTSISEP 192
BLAST of mRNA_L-elsbetiae_contig16392.4342.1 vs. uniprot
Match: D7FIX7_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX7_ECTSI) HSP 1 Score: 108 bits (271), Expect = 2.310e-24 Identity = 72/175 (41.14%), Postives = 89/175 (50.86%), Query Frame = 1 Query: 46 LTASSQDTEAALGQRRSEMDQAWRRIDEGWKDLQQRMAEIGITKASDANEGMVQLNVGGSCVNVRRSVLDGKQGSSSSGWTLANLFEARWDKRVPVDKEGRYVLDESPIAVKHLIHALLTGPQAGEKRSQESGAPLIAVDEEPFL-PFVSHALGLSDSTVMAAVT--GGSTVLGP 561 + AS++ TEAAL QRR EMDQAW D+GW++LQ M E GK SS W L +LFEA WDKRVP D +GR VLDESPI VKHLI ALL P A + +G ++ D++P L + LGLS +T GG+T P Sbjct: 1 MEASARATEAALSQRRREMDQAWDDTDQGWQELQAHMTE-------------------------------GKGEQPSSTWALGDLFEAEWDKRVPRDADGRIVLDESPICVKHLIEALLLRPNAANGTA--TGEADMSRDDQPDLFHHTARVLGLSGQLAPVGMTIKGGTTTFDP 142
BLAST of mRNA_L-elsbetiae_contig16392.4342.1 vs. uniprot
Match: D7FIV0_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV0_ECTSI) HSP 1 Score: 106 bits (264), Expect = 2.250e-23 Identity = 66/153 (43.14%), Postives = 89/153 (58.17%), Query Frame = 1 Query: 100 MDQAWRRIDEGWKDLQQRMAEIGITKASDANEGMVQLNVGGSCVNVRRSVLDGKQGSSSSGWTLANLFEAR-WDKRVPVDKEGRYVLDESPIAVKHLIHALLTGPQAGEKRSQESGAPLIAVDEEPFLPFVSHALGLSDSTVMAAVTGGSTVL 555 M + W ++D GW+ L+ +M E G++ S +V+LNVGG VN+ RSVL SSSS WTL +LFE WDKR+P ++GR VLDESP+ V+ L+ A KR S P DE+P++ V+ ALGL + V GGST L Sbjct: 1 MKKEWDKLDSGWEALESKMNETGMSMVSSIQPSIVRLNVGGLDVNIARSVLRKAGESSSSTWTLGDLFEGCVWDKRLPRCEDGRIVLDESPVCVEELLC------DASSKRPGNSNFP---DDEKPYIGGVASALGLD---LGMTVPGGSTTL 141 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16392.4342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig16392.4342.1 >prot_L-elsbetiae_contig16392.4342.1 ID=prot_L-elsbetiae_contig16392.4342.1|Name=mRNA_L-elsbetiae_contig16392.4342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp MLRFQPNEREIFSVALTASSQDTEAALGQRRSEMDQAWRRIDEGWKDLQQback to top mRNA from alignment at L-elsbetiae_contig16392:1934..2494- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig16392.4342.1 ID=mRNA_L-elsbetiae_contig16392.4342.1|Name=mRNA_L-elsbetiae_contig16392.4342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=561bp|location=Sequence derived from alignment at L-elsbetiae_contig16392:1934..2494- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig16392:1934..2494- >mRNA_L-elsbetiae_contig16392.4342.1 ID=mRNA_L-elsbetiae_contig16392.4342.1|Name=mRNA_L-elsbetiae_contig16392.4342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig16392:1934..2494- (Laminarionema elsbetiae ELsaHSoW15)back to top |