mRNA_L-elsbetiae_contig16392.4342.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16392.4342.1
Unique NamemRNA_L-elsbetiae_contig16392.4342.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16392.4342.1 vs. uniprot
Match: A0A6H5LAP0_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAP0_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 5.030e-44
Identity = 91/190 (47.89%), Postives = 118/190 (62.11%), Query Frame = 1
Query:    1 MLRFQPNEREIFSVALTASSQDTEAALGQRRSEMDQAWRRIDEGWKDLQQRMAEIGITKASDANEGMVQLNVGGSCVNVRRSVLDGKQGSSSSGWTLANLFEARWDKRVPVDKEGRYVLDESPIAVKHLIHALLTGPQAGEKRSQESGAPLIAVDEEP-FLPFVSHALGLSD--STVMAAVTGGSTVLGP 561
            MLR Q NE++ FS  L  SS+  EAAL QRR EMD  W  IDEGW+ L++RM E+GITK  ++ EG+V+LNVGG  +  RRSVLD +       W L NLFEA WDKRVP D +G  VLDESP  VK L+H LLT   + +     +G    A +E+P  L + +  LGLS   + V  ++ GG+T+  P
Sbjct:    1 MLRCQSNEKKTFSATLAVSSRAMEAALSQRRLEMDHEWDSIDEGWQTLRERMTEVGITKPLESKEGIVKLNVGGLLLAFRRSVLDSEGKQQPPTWALGNLFEAEWDKRVPRDSDGHIVLDESPTCVKQLVHRLLTASSSSKATVGRAGD--FARNEDPALLHYTAGVLGLSGCLAPVGMSIQGGTTIFEP 188          
BLAST of mRNA_L-elsbetiae_contig16392.4342.1 vs. uniprot
Match: A0A6H5L232_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L232_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.130e-40
Identity = 90/189 (47.62%), Postives = 118/189 (62.43%), Query Frame = 1
Query:    1 MLRFQPNEREIFSVALTASSQDTEAALGQRRSEMDQAWRRIDEGWKDLQQRMAEIGITKASDANEGMVQLNVGGSCVNVRRSVLDGKQGSSSSGWTLANLFEARWDKRVPVDKEGRYVLDESPIAVKHLIHALL--TGPQAGEKRSQESGAPLIAVDEEPFLPFVSHALGLSDSTVMAA--VTGGSTVL 555
            M R   NE + FS  +TA S++ EAALGQRR  M QAW  ++ GW +L Q   + GITK   + EGM++LNVGGS +  RR VLDGK+  S++ W L NLFE+ WD R+P D +GR VLD+SP  VK LIH+L+  +G   G     E+ AP    DE  +LP V+ ALGLS    +    V GG+T+L
Sbjct:    1 MSRCHMNEDDTFSATVTAYSKEMEAALGQRRKGMSQAWEDVERGWHELNQCRIDAGITKPFGSQEGMLRLNVGGSHLRFRRCVLDGKKEPSAT-WALGNLFESVWDDRLPRDSDGRIVLDKSPACVKDLIHSLIESSGAAPGSLPRGETLAP----DEMAYLPHVARALGLSAYIPLQGMEVVGGTTIL 184          
BLAST of mRNA_L-elsbetiae_contig16392.4342.1 vs. uniprot
Match: D7FIX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX9_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.900e-38
Identity = 83/194 (42.78%), Postives = 111/194 (57.22%), Query Frame = 1
Query:    1 MLRFQPNEREIFSVALTASSQDTEAALGQRRSEMDQAWRRIDEGWKDLQQRMAEIGITKASDANEGMVQLNVGGSCVNVRRSVLD----GKQGSSSSGWTLANLFEARWDKRVPVDKEGRYVLDESPIAVKHLIHALLTGPQAGEKRSQESGAPLIAVDEE-PFLPFVSHALGLSDSTV--MAAVTGGSTVLGP 561
            MLRF  NE++ FS  + A + +TEAAL QR                 L++RM ++GIT   D+ +G+ +LNVGGS V+ RRSVL     GKQ    S W L NLFEA WDKRVP D +GR VLDESP  VKHL+H LLT     E  +   G   +A D++   L + +  LGLS   V  + ++ GG+++  P
Sbjct:    1 MLRFHSNEKKSFSATMEAFALETEAALAQRWQXXXXXXXXXXXXXXXLRERMTQVGITTPLDSKKGIDKLNVGGSLVSFRRSVLSTEAGGKQQQQPSTWALENLFEAEWDKRVPGDSDGRIVLDESPTCVKHLVHGLLTRSSLAEDTAAREGE--VACDDKLDLLDYTARVLGLSGRLVPVLMSIIGGTSISEP 192          
BLAST of mRNA_L-elsbetiae_contig16392.4342.1 vs. uniprot
Match: D7FIX7_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX7_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.310e-24
Identity = 72/175 (41.14%), Postives = 89/175 (50.86%), Query Frame = 1
Query:   46 LTASSQDTEAALGQRRSEMDQAWRRIDEGWKDLQQRMAEIGITKASDANEGMVQLNVGGSCVNVRRSVLDGKQGSSSSGWTLANLFEARWDKRVPVDKEGRYVLDESPIAVKHLIHALLTGPQAGEKRSQESGAPLIAVDEEPFL-PFVSHALGLSDSTVMAAVT--GGSTVLGP 561
            + AS++ TEAAL QRR EMDQAW   D+GW++LQ  M E                               GK    SS W L +LFEA WDKRVP D +GR VLDESPI VKHLI ALL  P A    +  +G   ++ D++P L    +  LGLS       +T  GG+T   P
Sbjct:    1 MEASARATEAALSQRRREMDQAWDDTDQGWQELQAHMTE-------------------------------GKGEQPSSTWALGDLFEAEWDKRVPRDADGRIVLDESPICVKHLIEALLLRPNAANGTA--TGEADMSRDDQPDLFHHTARVLGLSGQLAPVGMTIKGGTTTFDP 142          
BLAST of mRNA_L-elsbetiae_contig16392.4342.1 vs. uniprot
Match: D7FIV0_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV0_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 2.250e-23
Identity = 66/153 (43.14%), Postives = 89/153 (58.17%), Query Frame = 1
Query:  100 MDQAWRRIDEGWKDLQQRMAEIGITKASDANEGMVQLNVGGSCVNVRRSVLDGKQGSSSSGWTLANLFEAR-WDKRVPVDKEGRYVLDESPIAVKHLIHALLTGPQAGEKRSQESGAPLIAVDEEPFLPFVSHALGLSDSTVMAAVTGGSTVL 555
            M + W ++D GW+ L+ +M E G++  S     +V+LNVGG  VN+ RSVL     SSSS WTL +LFE   WDKR+P  ++GR VLDESP+ V+ L+        A  KR   S  P    DE+P++  V+ ALGL    +   V GGST L
Sbjct:    1 MKKEWDKLDSGWEALESKMNETGMSMVSSIQPSIVRLNVGGLDVNIARSVLRKAGESSSSTWTLGDLFEGCVWDKRLPRCEDGRIVLDESPVCVEELLC------DASSKRPGNSNFP---DDEKPYIGGVASALGLD---LGMTVPGGSTTL 141          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16392.4342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5LAP0_9PHAE5.030e-4447.89TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L232_9PHAE1.130e-4047.62TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIX9_ECTSI3.900e-3842.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FIX7_ECTSI2.310e-2441.14BTB_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FIV0_ECTSI2.250e-2343.14TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16392contigL-elsbetiae_contig16392:1934..2494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size561
Cds size561
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.6762552-CDS-L-elsbetiae_contig16392:1933..24941622815676.6762552-CDS-L-elsbetiae_contig16392:1933..2494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16392 1934..2494 -
1691683031.3307943-CDS-L-elsbetiae_contig16392:1933..24941691683031.3307943-CDS-L-elsbetiae_contig16392:1933..2494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16392 1934..2494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16392.4342.1prot_L-elsbetiae_contig16392.4342.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16392 1934..2494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16392.4342.1

>prot_L-elsbetiae_contig16392.4342.1 ID=prot_L-elsbetiae_contig16392.4342.1|Name=mRNA_L-elsbetiae_contig16392.4342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
MLRFQPNEREIFSVALTASSQDTEAALGQRRSEMDQAWRRIDEGWKDLQQ
RMAEIGITKASDANEGMVQLNVGGSCVNVRRSVLDGKQGSSSSGWTLANL
FEARWDKRVPVDKEGRYVLDESPIAVKHLIHALLTGPQAGEKRSQESGAP
LIAVDEEPFLPFVSHALGLSDSTVMAAVTGGSTVLGP
back to top

mRNA from alignment at L-elsbetiae_contig16392:1934..2494-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16392.4342.1 ID=mRNA_L-elsbetiae_contig16392.4342.1|Name=mRNA_L-elsbetiae_contig16392.4342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=561bp|location=Sequence derived from alignment at L-elsbetiae_contig16392:1934..2494- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTACGTTTCCAACCGAACGAGCGGGAGATCTTCTCGGTGGCTCTCAC GGCCTCCTCCCAGGATACTGAGGCAGCTCTTGGACAGAGGCGGAGCGAGA TGGACCAGGCGTGGAGGCGCATCGATGAGGGATGGAAAGACCTTCAGCAA CGCATGGCCGAAATCGGTATCACTAAGGCCTCCGATGCGAACGAGGGGAT GGTGCAGCTAAATGTGGGGGGCTCATGTGTCAACGTTCGCCGCTCGGTTC TTGACGGGAAACAGGGTTCGTCGTCCTCCGGCTGGACGTTGGCCAACCTG TTTGAAGCACGATGGGATAAGCGTGTTCCAGTTGACAAGGAAGGCCGCTA CGTCCTGGATGAATCTCCCATTGCCGTGAAACATCTGATCCACGCTCTTC TGACTGGCCCGCAAGCAGGGGAGAAACGTTCCCAGGAGTCAGGGGCTCCG TTGATCGCGGTCGACGAGGAACCGTTTCTTCCGTTCGTCTCCCATGCCCT TGGTCTGTCGGACTCTACCGTCATGGCCGCAGTGACGGGAGGGAGCACTG TTCTCGGGCCA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16392:1934..2494-

>mRNA_L-elsbetiae_contig16392.4342.1 ID=mRNA_L-elsbetiae_contig16392.4342.1|Name=mRNA_L-elsbetiae_contig16392.4342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig16392:1934..2494- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTACGTTTCCAACCGAACGAGCGGGAGATCTTCTCGGTGGCTCTCAC
GGCCTCCTCCCAGGATACTGAGGCAGCTCTTGGACAGAGGCGGAGCGAGA
TGGACCAGGCGTGGAGGCGCATCGATGAGGGATGGAAAGACCTTCAGCAA
CGCATGGCCGAAATCGGTATCACTAAGGCCTCCGATGCGAACGAGGGGAT
GGTGCAGCTAAATGTGGGGGGCTCATGTGTCAACGTTCGCCGCTCGGTTC
TTGACGGGAAACAGGGTTCGTCGTCCTCCGGCTGGACGTTGGCCAACCTG
TTTGAAGCACGATGGGATAAGCGTGTTCCAGTTGACAAGGAAGGCCGCTA
CGTCCTGGATGAATCTCCCATTGCCGTGAAACATCTGATCCACGCTCTTC
TGACTGGCCCGCAAGCAGGGGAGAAACGTTCCCAGGAGTCAGGGGCTCCG
TTGATCGCGGTCGACGAGGAACCGTTTCTTCCGTTCGTCTCCCATGCCCT
TGGTCTGTCGGACTCTACCGTCATGGCCGCAGTGACGGGAGGGAGCACTG
TTCTCGGGCCAATGCTACGTTTCCAACCGAACGAGCGGGAGATCTTCTCG
GTGGCTCTCACGGCCTCCTCCCAGGATACTGAGGCAGCTCTTGGACAGAG
GCGGAGCGAGATGGACCAGGCGTGGAGGCGCATCGATGAGGGATGGAAAG
ACCTTCAGCAACGCATGGCCGAAATCGGTATCACTAAGGCCTCCGATGCG
AACGAGGGGATGGTGCAGCTAAATGTGGGGGGCTCATGTGTCAACGTTCG
CCGCTCGGTTCTTGACGGGAAACAGGGTTCGTCGTCCTCCGGCTGGACGT
TGGCCAACCTGTTTGAAGCACGATGGGATAAGCGTGTTCCAGTTGACAAG
GAAGGCCGCTACGTCCTGGATGAATCTCCCATTGCCGTGAAACATCTGAT
CCACGCTCTTCTGACTGGCCCGCAAGCAGGGGAGAAACGTTCCCAGGAGT
CAGGGGCTCCGTTGATCGCGGTCGACGAGGAACCGTTTCTTCCGTTCGTC
TCCCATGCCCTTGGTCTGTCGGACTCTACCGTCATGGCCGCAGTGACGGG
AGGGAGCACTGTTCTCGGGCCA
back to top