mRNA_L-elsbetiae_contig1635.4323.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1635.4323.1
Unique NamemRNA_L-elsbetiae_contig1635.4323.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1635.4323.1 vs. uniprot
Match: A0A6H5K5U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5U4_9PHAE)

HSP 1 Score: 347 bits (889), Expect = 1.660e-113
Identity = 209/334 (62.57%), Postives = 231/334 (69.16%), Query Frame = 1 
Query:   40 AGLIAHSVLSCLSGLSVAVTGFGCDISRELLHLLVAADDVYAPTTAINTGLAAALVTAAQATLQRRLINRGLLLNMIPLTFIGVVLSLNVFSAAALAAIVPALGAILFGLCLARLWMELADCRHKASVREWDDGRDASNSWTWTGAYCCVLSVASLTGGLLSGRCPPPGPAFMLVLXXXXXXXXXXXXXLGVGGGEWRATAALVTCSASLLRVGLLLLENGASVGPLPEVFALVAGGLAGLGAGNLSLRLLFPPS---NTTDAINPNTGAD--RSHNTPPXXXXXXXXXXXXXXXXXXXXXXXXXAALAGVSRPLVAGALAVVLAVALCGGLWG 1026
            AGL+ H  LS LSGLSVA+TGF CD +RE+L  L      +  ++AIN G +A LVTA QA L RRLIN  LLLN +PLTFIGVVLSLNVFS + LAA+VPALGA LFGL LA+LWMELADCRH+ SVRE DDGR++S SW WTG  C VLSVASLTGGLLSG CPPPGPAFM+VL             L VGGGEWRATAALVTCSASLLRVGLLLLENGA+VGPLPEV  LV GGLAGLG GNLSLRLL  P    N +   + N+ AD  R H+TP                          AALA VSRP+VAGALA  L VA  G LWG
Sbjct:    2 AGLLVHGALSFLSGLSVAITGFDCDSAREILTELAPDSSAFDASSAINMGFSAGLVTAVQAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSVREPDDGRESSRSWKWTGDLC-VLSVASLTGGLLSGSCPPPGPAFMVVLLAAGVGGSGDA--LAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPEVSGLVLGGLAGLGIGNLSLRLLSRPRWGINDSKNGSANSAADAYRWHDTPTAAALRRAVLAVALVSSIAMAAGGPPAALAAVSRPVVAGALAATLLVASFGALWG 332
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BLAST of mRNA_L-elsbetiae_contig1635.4323.1 vs. uniprot
Match: D7FQ64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ64_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 2.760e-90
Identity = 159/231 (68.83%), Postives = 177/231 (76.62%), Query Frame = 1 
Query:   34 MTAGLIAHSVLSCLSGLSVAVTGFGCDISRELLHLLVAADDVYAPTTAINTGLAAALVTAAQATLQRRLINRGLLLNMIPLTFIGVVLSLNVFSAAALAAIVPALGAILFGLCLARLWMELADCRHKASVREWDDGRDASNSWTWTGAYCCVLSVASLTGGLLSGRCPPPGPAFMLVLXXXXXXXXXXXXXLGVGGGEWRATAALVTCSASLLRVGLLLLENGASVGPLPE 726
            M AGL+ H  LS LSGLSVA+TGF CD +RE+L  +      +  ++AIN G +A LVTA QA L RRLIN  LLLN +PLTFIGVVLSLNVFS + LAA+VPALGA LFGL LA+LWMELADCRH+ SVRE DD R++S SW WTG    VLSVASLTGGLLSG CPPPGPAFM+VL             L VGGGEWRATAALVTCSASLLRVGLLLLENGA+VGPLPE
Sbjct:   70 MAAGLLMHGTLSFLSGLSVAITGFDCDSAREILTEMAPDSSAFDASSAINMGFSAGLVTAVQAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSVREPDDDRESSRSWKWTG----VLSVASLTGGLLSGSCPPPGPAFMVVLLAAGVGGSGDA--LAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPE 294
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1635.4323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5U4_9PHAE1.660e-11362.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ64_ECTSI2.760e-9068.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1635contigL-elsbetiae_contig1635:6883..9159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007280.1
Exons5
Model size1026
Cds size1026
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1635.4323.1prot_L-elsbetiae_contig1635.4323.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1635 6883..9159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.0482144-CDS-L-elsbetiae_contig1635:6882..71821622815675.0482144-CDS-L-elsbetiae_contig1635:6882..7182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1635 6883..7182 -
1691683030.3621628-CDS-L-elsbetiae_contig1635:6882..71821691683030.3621628-CDS-L-elsbetiae_contig1635:6882..7182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1635 6883..7182 -
1622815675.0592217-CDS-L-elsbetiae_contig1635:7483..77251622815675.0592217-CDS-L-elsbetiae_contig1635:7483..7725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1635 7484..7725 -
1691683030.371808-CDS-L-elsbetiae_contig1635:7483..77251691683030.371808-CDS-L-elsbetiae_contig1635:7483..7725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1635 7484..7725 -
1622815675.0711424-CDS-L-elsbetiae_contig1635:7995..80801622815675.0711424-CDS-L-elsbetiae_contig1635:7995..8080Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1635 7996..8080 -
1691683030.3808033-CDS-L-elsbetiae_contig1635:7995..80801691683030.3808033-CDS-L-elsbetiae_contig1635:7995..8080Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1635 7996..8080 -
1622815675.0818331-CDS-L-elsbetiae_contig1635:8397..85771622815675.0818331-CDS-L-elsbetiae_contig1635:8397..8577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1635 8398..8577 -
1691683030.390868-CDS-L-elsbetiae_contig1635:8397..85771691683030.390868-CDS-L-elsbetiae_contig1635:8397..8577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1635 8398..8577 -
1622815675.0921867-CDS-L-elsbetiae_contig1635:8940..91591622815675.0921867-CDS-L-elsbetiae_contig1635:8940..9159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1635 8941..9159 -
1691683030.401811-CDS-L-elsbetiae_contig1635:8940..91591691683030.401811-CDS-L-elsbetiae_contig1635:8940..9159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1635 8941..9159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1635.4323.1

>prot_L-elsbetiae_contig1635.4323.1 ID=prot_L-elsbetiae_contig1635.4323.1|Name=mRNA_L-elsbetiae_contig1635.4323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=342bp
RGFDRRGVGREMTAGLIAHSVLSCLSGLSVAVTGFGCDISRELLHLLVAA
DDVYAPTTAINTGLAAALVTAAQATLQRRLINRGLLLNMIPLTFIGVVLS
LNVFSAAALAAIVPALGAILFGLCLARLWMELADCRHKASVREWDDGRDA
SNSWTWTGAYCCVLSVASLTGGLLSGRCPPPGPAFMLVLLGAGAGGGGGG
GALGVGGGEWRATAALVTCSASLLRVGLLLLENGASVGPLPEVFALVAGG
LAGLGAGNLSLRLLFPPSNTTDAINPNTGADRSHNTPPPAAFRRSVLAVA
TTSSVALAAGGPPAALAGVSRPLVAGALAVVLAVALCGGLWG
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mRNA from alignment at L-elsbetiae_contig1635:6883..9159-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1635.4323.1 ID=mRNA_L-elsbetiae_contig1635.4323.1|Name=mRNA_L-elsbetiae_contig1635.4323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2277bp|location=Sequence derived from alignment at L-elsbetiae_contig1635:6883..9159- (Laminarionema elsbetiae ELsaHSoW15)
CGCGGGTTTGATCGGAGGGGAGTCGGACGAGAGATGACTGCAGGACTGAT
AGCCCACAGCGTCTTGTCGTGTTTGTCGGGGTTGTCGGTGGCGGTGACGG
GTTTTGGGTGCGACATATCACGGGAGCTTTTACACCTGCTCGTGGCAGCA
GATGATGTTTATGCCCCAACGACCGCGATCAACACGGGGCTAGCAGCAGC
GCTGGTGACGGCTGCCCAGGTGAATCACCAGTTGGTGTCCTCTCGTGAAC
AGATAATGCTCATATGCCTGTCTGTCGCAGAGAGGATGGACGGCGGAAGG
GATGAAACAGGTCGCGGAACAAAATGCGGCGAGATTAAGTCTACTGTGTA
GATATGTACTTCTAGATACGTGTAATAAAACATAGATAGACAATGTATCC
AGTCTAGCAGTAGCAGTTGGATATGAACGATAACGCACTTACGCTGCTGC
GCTGCCGGAAGACTTGAGTGTGTGCACCCTTGAAAATGATGACCCCGTCA
ATACCGACGCTGATATCACGAGCGATCTGCCTTTCTTTGCTGGCCGTGCT
TTTCTCCTCGACGACTCCTTCGCCACCCCCAGGCGACGCTCCAGCGACGA
TTGATCAACCGAGGCCTGCTCCTCAATATGATACCCTTGACGTTTATCGG
CGTGGTGCTGTCCCTCAACGTATTCTCCGCCGCCGCTCTGGCGGCAATCG
TGCCCGCCCTTGGAGCGATCCTGTTCGGGCTGTGCCTGGCTAGGCTCTGG
ATGGAGCTGGCGGTAAGTGGAGTGGAGTGGAGTAGAGTGGAGCGCGGCTA
GTCTGCGGTGCTGTTTGTTACCACTGCTGTAGCAGCATGTACCCTGTACT
GAATTGAGAGTCCTGCCCTCCCGCAGCGTACGTTCAACTCTTGGAGATAT
CGGGCATGACCAAATTCCACTTCTTCCGCGTCTTGTCTTCCCTCTTTTCG
CTCGCCCTCTCGGTTTAGAGCCTCCGTTCCACCTCCACCCGACCCACCAA
ATCAGGAAGTCGCGCACTGACACGCTGCTGCTTTCTTTGGTACGCCTCCT
TTGTTCGCGTGTCTACCCCGCTTCCATAGGACTGCCGGCACAAGGCGTCC
GTCAGAGAGTGGGATGACGGCCGCGATGCCTCCAACTCATGGACGTGGAC
AGGCGCGTACTGCTGTGTGCACGCTCTCGCCTGTGTGTCGCATGTTGGCT
GCCGAAGTTCAAAAAGCCTGCAGTTTGCCGCAGTTCCCCCCTCCCTTGGT
GTCATGATATTATCCACACGAAACCCAGCCTGGGCTCGTGATAACCCGGT
CAATCACTCTGTCCCGGTGTCGATGGTTTGACGAGAACCATTGTCCCACT
CCGCCCTCAAAACGATCGAAACTATGTACGTGTCGTATTAATGATCGTTT
TCGTTTTTGGCTTGTATTCGTGCCTGTCCGACAGGTGTTTTGTCGGTGGC
GAGCCTCACAGGAGGGCTACTTTCCGGGCGTTGCCCCCCCCCCGGTCCAG
CTTTCATGTTGGTGCTGCTTGGGGCGGGAGCGGGAGGGGGCGGTGGCGGC
GGCGCTTTGGGCGTAGGCGGTGGCGAGTGGAGGGCCACGGCGGCCTTGGT
CACGTGCAGCGCTTCCCTTCTCCGAGTCGGCTTGTTGTTGCTGGAGAATG
GAGCGTCAGTGGGGCCGCTACCCGAGGTGTGTGTTATCCTGCGTGTGTCT
TGTGTGTGCCGCTTCACCGGCAACGATTACAACCCGTTCGGGCGGGGTGG
GGGGCAATCGGTTTCTTTAGTCAATCGTGATATTTGACCTCATACATGTC
TTTTTTTTTTCGGCCGGTGAGGGAGGGGCACTGAGAGGCAAACGATCCAA
AGTAACATAAGTACGCCCTACCTATGTATGTACCCTGCCGAGCGCATCGT
GTGTGCCACGCTCTCGCCTCCGGGAGCGAAAAACTTGGTTTCAGTGTCCT
GCGTTGTTCCATCTACCCATGACATAGGTGTTCGCGCTCGTCGCGGGAGG
CCTAGCGGGCCTCGGGGCGGGCAACCTCTCCCTCCGCCTGCTGTTCCCGC
CCAGCAACACCACCGACGCCATCAACCCCAACACGGGAGCCGATCGATCG
CACAACACCCCCCCTCCGGCGGCTTTTCGGCGCTCCGTCCTCGCCGTCGC
GACCACCTCTTCCGTGGCCCTGGCCGCGGGAGGCCCCCCCGCTGCCCTGG
CCGGCGTCTCGCGGCCGCTGGTGGCCGGGGCGCTCGCGGTCGTTCTGGCC
GTTGCTCTGTGCGGCGGGCTGTGGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1635:6883..9159-

>mRNA_L-elsbetiae_contig1635.4323.1 ID=mRNA_L-elsbetiae_contig1635.4323.1|Name=mRNA_L-elsbetiae_contig1635.4323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2052bp|location=Sequence derived from alignment at L-elsbetiae_contig1635:6883..9159- (Laminarionema elsbetiae ELsaHSoW15)
CGCGGGTTTGATCGGAGGGGAGTCGGACGAGAGATGACTGCAGGACTGAT
AGCCCACAGCGTCTTGTCGTGTTTGTCGGGGTTGTCGGTGGCGGTGACGG
GTTTTGGGTGCGACATATCACGGGAGCTTTTACACCTGCTCGTGGCAGCA
GATGATGTTTATGCCCCAACGACCGCGATCAACACGGGGCTAGCAGCAGC
GCTGGTGACGGCTGCCCAGCGCGGGTTTGATCGGAGGGGAGTCGGACGAG
AGATGACTGCAGGACTGATAGCCCACAGCGTCTTGTCGTGTTTGTCGGGG
TTGTCGGTGGCGGTGACGGGTTTTGGGTGCGACATATCACGGGAGCTTTT
ACACCTGCTCGTGGCAGCAGATGATGTTTATGCCCCAACGACCGCGATCA
ACACGGGGCTAGCAGCAGCGCTGGTGACGGCTGCCCAGGCGACGCTCCAG
CGACGATTGATCAACCGAGGCCTGCTCCTCAATATGATACCCTTGACGTT
TATCGGCGTGGTGCTGTCCCTCAACGTATTCTCCGCCGCCGCTCTGGCGG
CAATCGTGCCCGCCCTTGGAGCGATCCTGTTCGGGCTGTGCCTGGCTAGG
CTCTGGATGGAGCTGGCGGCGACGCTCCAGCGACGATTGATCAACCGAGG
CCTGCTCCTCAATATGATACCCTTGACGTTTATCGGCGTGGTGCTGTCCC
TCAACGTATTCTCCGCCGCCGCTCTGGCGGCAATCGTGCCCGCCCTTGGA
GCGATCCTGTTCGGGCTGTGCCTGGCTAGGCTCTGGATGGAGCTGGCGGA
CTGCCGGCACAAGGCGTCCGTCAGAGAGTGGGATGACGGCCGCGATGCCT
CCAACTCATGGACGTGGACAGGCGCGTACTGCTGACTGCCGGCACAAGGC
GTCCGTCAGAGAGTGGGATGACGGCCGCGATGCCTCCAACTCATGGACGT
GGACAGGCGCGTACTGCTGTGTTTTGTCGGTGGCGAGCCTCACAGGAGGG
CTACTTTCCGGGCGTTGCCCCCCCCCCGGTCCAGCTTTCATGTTGGTGCT
GCTTGGGGCGGGAGCGGGAGGGGGCGGTGGCGGCGGCGCTTTGGGCGTAG
GCGGTGGCGAGTGGAGGGCCACGGCGGCCTTGGTCACGTGCAGCGCTTCC
CTTCTCCGAGTCGGCTTGTTGTTGCTGGAGAATGGAGCGTCAGTGGGGCC
GCTACCCGAGGTGTTTTGTCGGTGGCGAGCCTCACAGGAGGGCTACTTTC
CGGGCGTTGCCCCCCCCCCGGTCCAGCTTTCATGTTGGTGCTGCTTGGGG
CGGGAGCGGGAGGGGGCGGTGGCGGCGGCGCTTTGGGCGTAGGCGGTGGC
GAGTGGAGGGCCACGGCGGCCTTGGTCACGTGCAGCGCTTCCCTTCTCCG
AGTCGGCTTGTTGTTGCTGGAGAATGGAGCGTCAGTGGGGCCGCTACCCG
AGGTGTTCGCGCTCGTCGCGGGAGGCCTAGCGGGCCTCGGGGCGGGCAAC
CTCTCCCTCCGCCTGCTGTTCCCGCCCAGCAACACCACCGACGCCATCAA
CCCCAACACGGGAGCCGATCGATCGCACAACACCCCCCCTCCGGCGGCTT
TTCGGCGCTCCGTCCTCGCCGTCGCGACCACCTCTTCCGTGGCCCTGGCC
GCGGGAGGCCCCCCCGCTGCCCTGGCCGGCGTCTCGCGGCCGCTGGTGGC
CGGGGCGCTCGCGGTCGTTCTGGCCGTTGCTCTGTGCGGCGGGCTGTGGG
GCGTGTTCGCGCTCGTCGCGGGAGGCCTAGCGGGCCTCGGGGCGGGCAAC
CTCTCCCTCCGCCTGCTGTTCCCGCCCAGCAACACCACCGACGCCATCAA
CCCCAACACGGGAGCCGATCGATCGCACAACACCCCCCCTCCGGCGGCTT
TTCGGCGCTCCGTCCTCGCCGTCGCGACCACCTCTTCCGTGGCCCTGGCC
GCGGGAGGCCCCCCCGCTGCCCTGGCCGGCGTCTCGCGGCCGCTGGTGGC
CGGGGCGCTCGCGGTCGTTCTGGCCGTTGCTCTGTGCGGCGGGCTGTGGG
GC
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