prot_L-elsbetiae_contig1635.4323.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1635.4323.1
Unique Nameprot_L-elsbetiae_contig1635.4323.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length342
Homology
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BLAST of mRNA_L-elsbetiae_contig1635.4323.1 vs. uniprot
Match: A0A6H5K5U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5U4_9PHAE)

HSP 1 Score: 347 bits (889), Expect = 1.660e-113
Identity = 209/334 (62.57%), Postives = 231/334 (69.16%), Query Frame = 0 
Query:   14 AGLIAHSVLSCLSGLSVAVTGFGCDISRELLHLLVAADDVYAPTTAINTGLAAALVTAAQATLQRRLINRGLLLNMIPLTFIGVVLSLNVFSAAALAAIVPALGAILFGLCLARLWMELADCRHKASVREWDDGRDASNSWTWTGAYCCVLSVASLTGGLLSGRCPPPGPAFMLVLXXXXXXXXXXXXXLGVGGGEWRATAALVTCSASLLRVGLLLLENGASVGPLPEVFALVAGGLAGLGAGNLSLRLLFPPS---NTTDAINPNTGAD--RSHNTPPXXXXXXXXXXXXXXXXXXXXXXXXXAALAGVSRPLVAGALAVVLAVALCGGLWG 342
            AGL+ H  LS LSGLSVA+TGF CD +RE+L  L      +  ++AIN G +A LVTA QA L RRLIN  LLLN +PLTFIGVVLSLNVFS + LAA+VPALGA LFGL LA+LWMELADCRH+ SVRE DDGR++S SW WTG  C VLSVASLTGGLLSG CPPPGPAFM+VL             L VGGGEWRATAALVTCSASLLRVGLLLLENGA+VGPLPEV  LV GGLAGLG GNLSLRLL  P    N +   + N+ AD  R H+TP                          AALA VSRP+VAGALA  L VA  G LWG
Sbjct:    2 AGLLVHGALSFLSGLSVAITGFDCDSAREILTELAPDSSAFDASSAINMGFSAGLVTAVQAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSVREPDDGRESSRSWKWTGDLC-VLSVASLTGGLLSGSCPPPGPAFMVVLLAAGVGGSGDA--LAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPEVSGLVLGGLAGLGIGNLSLRLLSRPRWGINDSKNGSANSAADAYRWHDTPTAAALRRAVLAVALVSSIAMAAGGPPAALAAVSRPVVAGALAATLLVASFGALWG 332
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BLAST of mRNA_L-elsbetiae_contig1635.4323.1 vs. uniprot
Match: D7FQ64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ64_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 2.760e-90
Identity = 159/231 (68.83%), Postives = 177/231 (76.62%), Query Frame = 0 
Query:   12 MTAGLIAHSVLSCLSGLSVAVTGFGCDISRELLHLLVAADDVYAPTTAINTGLAAALVTAAQATLQRRLINRGLLLNMIPLTFIGVVLSLNVFSAAALAAIVPALGAILFGLCLARLWMELADCRHKASVREWDDGRDASNSWTWTGAYCCVLSVASLTGGLLSGRCPPPGPAFMLVLXXXXXXXXXXXXXLGVGGGEWRATAALVTCSASLLRVGLLLLENGASVGPLPE 242
            M AGL+ H  LS LSGLSVA+TGF CD +RE+L  +      +  ++AIN G +A LVTA QA L RRLIN  LLLN +PLTFIGVVLSLNVFS + LAA+VPALGA LFGL LA+LWMELADCRH+ SVRE DD R++S SW WTG    VLSVASLTGGLLSG CPPPGPAFM+VL             L VGGGEWRATAALVTCSASLLRVGLLLLENGA+VGPLPE
Sbjct:   70 MAAGLLMHGTLSFLSGLSVAITGFDCDSAREILTEMAPDSSAFDASSAINMGFSAGLVTAVQAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSVREPDDDRESSRSWKWTG----VLSVASLTGGLLSGSCPPPGPAFMVVLLAAGVGGSGDA--LAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPE 294
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1635.4323.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5U4_9PHAE1.660e-11362.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ64_ECTSI2.760e-9068.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..52
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 151..172
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 184..205
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 73..83
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 212..231
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..101
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 266..295
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 296..317
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 102..106
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..72
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 173..183
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 243..265
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 232..242
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 206..211
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 318..322
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 107..130
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 342..342
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 131..150
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 323..341
NoneNo IPR availableTMHMMTMhelixcoord: 84..103
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 55..72
NoneNo IPR availableTMHMMTMhelixcoord: 295..317
NoneNo IPR availableTMHMMTMhelixcoord: 107..129
NoneNo IPR availableTMHMMTMhelixcoord: 184..206
NoneNo IPR availableTMHMMTMhelixcoord: 152..174
NoneNo IPR availableTMHMMTMhelixcoord: 322..341

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1635contigL-elsbetiae_contig1635:6883..9159 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1635.4323.1mRNA_L-elsbetiae_contig1635.4323.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1635 6883..9159 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1635.4323.1 ID=prot_L-elsbetiae_contig1635.4323.1|Name=mRNA_L-elsbetiae_contig1635.4323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=342bp
RGFDRRGVGREMTAGLIAHSVLSCLSGLSVAVTGFGCDISRELLHLLVAA
DDVYAPTTAINTGLAAALVTAAQATLQRRLINRGLLLNMIPLTFIGVVLS
LNVFSAAALAAIVPALGAILFGLCLARLWMELADCRHKASVREWDDGRDA
SNSWTWTGAYCCVLSVASLTGGLLSGRCPPPGPAFMLVLLGAGAGGGGGG
GALGVGGGEWRATAALVTCSASLLRVGLLLLENGASVGPLPEVFALVAGG
LAGLGAGNLSLRLLFPPSNTTDAINPNTGADRSHNTPPPAAFRRSVLAVA
TTSSVALAAGGPPAALAGVSRPLVAGALAVVLAVALCGGLWG
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