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Homology
BLAST of mRNA_L-elsbetiae_contig16279.4288.1 vs. uniprot
Match: D8LES5_ECTSI (UVR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES5_ECTSI) HSP 1 Score: 183 bits (464), Expect = 4.040e-49 Identity = 81/88 (92.05%), Postives = 87/88 (98.86%), Query Frame = 2
Query: 383 QFQWVIYDCETRGVQLLEEFSPRPFFLKMYLPYFDMFAQGFTPWAPDSKSFAYVSADAAFVQEVPDDGLAPMPRELGPNMEFVSWSFC 646
+FQWVIYDCETR VQLL+EFSPRPFFLKMYLPYFDMFAQGFTPWAPDSKSF+YVSA+A+FVQEVPDDGLAP+PRELGPNMEFVSWSFC
Sbjct: 618 KFQWVIYDCETRDVQLLDEFSPRPFFLKMYLPYFDMFAQGFTPWAPDSKSFSYVSAEASFVQEVPDDGLAPLPRELGPNMEFVSWSFC 705
BLAST of mRNA_L-elsbetiae_contig16279.4288.1 vs. uniprot
Match: A0A7S3XSM8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSM8_HETAK) HSP 1 Score: 93.6 bits (231), Expect = 6.930e-18 Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 2
Query: 389 QWVIYDCETRGVQLLEEFSPRPFFLKMYLPYFDMFAQGFTPWAPDSKSFAYVSADAAFVQEVPDDGLAPMPRELGPNMEFVSWSFC 646
+W + D +T V EF+PR F++K+YLP+FD +AQ +TPW+PDS+SF YVS + AFVQ + ++G P + EF +WS+C
Sbjct: 339 RWKVVDVDTGKVTNYPEFTPRTFYIKVYLPFFDQYAQSYTPWSPDSQSFGYVSQEGAFVQRIGEEG----PLRIAKQAEFSTWSWC 420
BLAST of mRNA_L-elsbetiae_contig16279.4288.1 vs. uniprot
Match: A0A7S1TSH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSH1_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 6.730e-12 Identity = 31/70 (44.29%), Postives = 48/70 (68.57%), Query Frame = 2
Query: 389 QWVIYDC------ETRGVQLLEEFSPRPFFLKMYLPYFDMFAQGFTPWAPDSKSFAYVSADAAFVQEVPD 580
+W++YD + +F+PRP+F+++YLP+FD +AQ FTPW+PDSKSF +V+ + FVQ +PD
Sbjct: 570 RWLVYDVHADPESDAPNPVPFPQFTPRPYFMRLYLPFFDQYAQSFTPWSPDSKSFVFVAQEGVFVQPLPD 639
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal anchor |
Exons | 3 |
Model size | 912 |
Cds size | 564 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815671.9243026-UTR-L-elsbetiae_contig16279:967..1092 | 1622815671.9243026-UTR-L-elsbetiae_contig16279:967..1092 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig16279 968..1092 + |
1691683028.3961382-UTR-L-elsbetiae_contig16279:967..1092 | 1691683028.3961382-UTR-L-elsbetiae_contig16279:967..1092 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig16279 968..1092 + |
1622815671.9712727-UTR-L-elsbetiae_contig16279:3528..3751 | 1622815671.9712727-UTR-L-elsbetiae_contig16279:3528..3751 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig16279 3529..3751 + |
1691683028.4315588-UTR-L-elsbetiae_contig16279:3528..3751 | 1691683028.4315588-UTR-L-elsbetiae_contig16279:3528..3751 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig16279 3529..3751 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815671.9372723-CDS-L-elsbetiae_contig16279:1092..1467 | 1622815671.9372723-CDS-L-elsbetiae_contig16279:1092..1467 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16279 1093..1467 + |
1691683028.4047585-CDS-L-elsbetiae_contig16279:1092..1467 | 1691683028.4047585-CDS-L-elsbetiae_contig16279:1092..1467 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16279 1093..1467 + |
1622815671.947799-CDS-L-elsbetiae_contig16279:2103..2174 | 1622815671.947799-CDS-L-elsbetiae_contig16279:2103..2174 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16279 2104..2174 + |
1691683028.414997-CDS-L-elsbetiae_contig16279:2103..2174 | 1691683028.414997-CDS-L-elsbetiae_contig16279:2103..2174 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16279 2104..2174 + |
1622815671.9591813-CDS-L-elsbetiae_contig16279:3410..3528 | 1622815671.9591813-CDS-L-elsbetiae_contig16279:3410..3528 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16279 3411..3528 + |
1691683028.4231055-CDS-L-elsbetiae_contig16279:3410..3528 | 1691683028.4231055-CDS-L-elsbetiae_contig16279:3410..3528 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16279 3411..3528 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig16279.4288.1 >prot_L-elsbetiae_contig16279.4288.1 ID=prot_L-elsbetiae_contig16279.4288.1|Name=mRNA_L-elsbetiae_contig16279.4288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp
MYACMYLRPLSPDTYVCSLFFFFLFPLLAYLFVVCPTGPLPPLRQGRRPS RGHTGIYLSTSVSAHNFLSDSSVRCRGGLLLSAPSRSSSGSSTTARRGVC SCWRSFLPGRFSSRCTSPTSTCLRKVSRRGRRTPSPSRTCRRTPLLYKRY QTTASLPCRGSSGLTWSSFRGRSAERSGAGVSRAKPS* back to topmRNA from alignment at L-elsbetiae_contig16279:968..3751+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig16279.4288.1 ID=mRNA_L-elsbetiae_contig16279.4288.1|Name=mRNA_L-elsbetiae_contig16279.4288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2784bp|location=Sequence derived from alignment at L-elsbetiae_contig16279:968..3751+ (Laminarionema elsbetiae ELsaHSoW15) CACATAAATATGGAGGGTTGTATGTAGAAGCTACACACGTTTCCTTGCTG
TGGTGCTGCTGCTGCTGTTTCAGGTCGGTGTTGTCCTCCTCGTTGTCGTC
GTCGCAAATCGGCAGGCGCGCACGTATGTATGCATGTATGTATCTCCGCC
CGCTCTCTCCTGATACGTATGTATGTAGTTTATTTTTCTTTTTTCTTTTT
CCATTATTGGCCTATCTATTCGTCGTCTGCCCCACTGGCCCGCTTCCCCC
ACTACGACAAGGTAGACGACCCAGCCGGGGTCACACAGGTATCTATCTAT
CTACCTCCGTCTCCGCCCACAATTTTCTGTCTGATTCTTCGGTGCGTTGC
CGTGGCGGCCTCCTTTTATCTGCCCCCTCTCGCAGTTCCAGTGGGTCATC
TACGACTGCGAGACGAGGGGTGTGCAGCTGCTGGAGGAGTTTTCTCCCCG
GCCGTTTTTCCTCAAGATGTACCTCCCCTACTTCGACATGTTTGCGCAAG
GTATGTACCGTGTGTGTGTATGCGCTTGTAAAGCAAACAAGCTACCCTAC
CCTACTCTACCCTCCGTCGCCGCCTGTGGGTGCGGAGAAAAAGGCCACAC
GGCTCCTTCCTGGGTGTTGAAGAACGCTCCCTTCCTGTGTTGCATTTTGT
TTTGTTTTTTTGTTGAAGGATGCCTTCGGCTTTCGTCAAACTTTTCGTCT
GTTGTTTCGAGGGATTTTTCCTTCTCTTTCTTTTTGTTTTTGCGAAAGTG
GTTGTCGCGCCTTTTCTTTCGTTCACTCCCCGCGCGCGCGCGCCCGCCCT
TCCTGCCTCCCTCTCAATACGTGTTCTCCCCTACCCCGCTGTGCACAAGA
TGGGTGGATCAAATACTTAATTTCCCTTCTCTTTGGGCTTCTTCATCGCT
CGAAAAAAAAAACTTCTGTGAAAACCCATCTCGTGGGAGTATGCTGCACC
TTTCATTTGTGCTGAACGTTCCCACAGGAATCGACCTGGTCAGTGTTGCG
GTTACGTAGCACGGACTCATAGAGGTACTGGATAGATAGATCGGGACGGT
TTTTAATGTGAAGACAACAACAATAGCAGGTTCTCTGACAACGAAAACCA
CGCCCGCCCGATGCTTCCTTGTTCCGTGATCACCAGGTTTCACGCCGTGG
GCGCCGGACTCCAAGTCCTTCGCGTACGTGTCGGCGGACGCCGCTTTTGT
ACAAGAGGTGCGGTTATTTCGCTTTTTTTTAGAAACATCAACAGCAACAT
GCGTTTTCGAAGTCTTTGTGAGTTTTCTTACTTAAACCCTCAAGGTTTGC
GGGAAAAGACAACATCAACAACAACAACATACGTTTTCGAAGTCTTTGTG
AGTTTTTCTTAGTCAAATCCTCCAGGTTTGCGCGGAAAGAGAGAGGGGGG
CGGGCGAGCGGTCGGTCGGTCGCAAGCAGCCGATTTCCCCAAACAGGGCT
CAACGATTTCTGCACGTTTACAGTCCCACGATGCCGTTGTTTCGTTTTTT
ATCCTTGGCTTGGTGCTTCCTGACCTCTGTCAAGTCAATAGGGCGTAATG
TTTGCACGGCCAACGCGGCTGCCGTGTGTAGGGCAGTTAGCAGCCCCACT
GACTACGCACGCGTGGGGCCTGTTACAGTTGCACTAAGAATGCTTAGAGA
AGATTAACGTGGCACGCGCGCGGCTCACACTTTTGCCCGGCAGGCGTTGT
TCTCCCTCTCGCCCCATCAAGAAAGCCAGACATATTTACAGCCAAAGAAA
GATACCACGTGGTATATTCCAGCTGCATACACTCTTGCGGAACAACGGCG
GTTTGGGATGACGGCAGGATACGCTTGATCACGCACGTCAAGTAAAAGGC
CCAGAGCTCTTACGCGACCATTTTTGTGTCCGACTTGAAGTCCGGTTTGA
GTATATTTACGTGCCCCGTTTTTTGTCTTTCCTCGGAGAAGGTACCGCGT
TTTTTTGCTTTACAACAAATTTACCCCCCCCCCCTCCCCCCGACAGAGCT
TGCGATTTTATTGTTGATGTGCGTGCAGAAGTCAAAAATTTTGAACGCAT
TCTCGGCGGGAGTGACTTTTTCTTGCGAAGTGACTTTTTTTCTCTCGCTT
CCGTCCCTGTCAGTGGATAGTGCTTATGTAGCGTGTGTACACAAACTTCA
ACCTCACCGTCGACGAGGGAAAGGGACGGGACGGCTGGACCCTTCTCGCG
ATAAAAATAGTAGGCAAGCACCGCAGACGGGGGTTCTGTGTGACCACGGT
TCGGTACTCTGGCAAGATGTCTTCGTGACAAGGGAGCCCATCGAGCACTG
GAAATAAATGTGAACCGAAAAAAAAGCTTGTACATGTTCTACCAGCAGGT
CTGCTTTTACAAAATATATAAAGTATATTTCGAAGCATATGTATATATGC
CAACGTCGCTTGGGCTCCCCCCCGTTCGAAAATGCATCTTCAGGTACCAG
ACGACGGCCTCGCTCCCATGCCGCGGGAGCTCGGGCCTAACATGGAGTTC
GTTTCGTGGTCGTTCTGCTGAGCGGAGCGGAGCCGGAGTGAGCAGGGCCA
AGCCAAGCTGAACCGGAAGGAGTTTCGCCGCTCTGGACTCGGGATCTGGT
TCACCGAGTCGGAGAGGTTATCGGTGTGTCCCGCCTAAAGTATCTCCGCG
GTCGGCTGCTGGTCGAGTTACGCGGCCGTTTTTGTCGATTGCCGGTCGGT
GTAGCCAGCCGGCCACGGAGGGGCTTGGAAGACAGGCTAATAGCTGATGG
TCCAGTGATCTCCTGCGTCGTTGCTCGTGGTTTC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig16279:968..3751+ >mRNA_L-elsbetiae_contig16279.4288.1 ID=mRNA_L-elsbetiae_contig16279.4288.1|Name=mRNA_L-elsbetiae_contig16279.4288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1128bp|location=Sequence derived from alignment at L-elsbetiae_contig16279:968..3751+ (Laminarionema elsbetiae ELsaHSoW15) ATGTATGCATGTATGTATCTCCGCCCGCTCTCTCCTGATACGTATGTATG TAGTTTATTTTTCTTTTTTCTTTTTCCATTATTGGCCTATCTATTCGTCG TCTGCCCCACTGGCCCGCTTCCCCCACTACGACAAGGTAGACGACCCAGC CGGGGTCACACAGGTATCTATCTATCTACCTCCGTCTCCGCCCACAATTT TCTGTCTGATTCTTCGGTGCGTTGCCGTGGCGGCCTCCTTTTATCTGCCC CCTCTCGCAGTTCCAGTGGGTCATCTACGACTGCGAGACGAGGGGTGTGC AGCTGCTGGAGGAGTTTTCTCCCCGGCCGTTTTTCCTCAAGATGTACCTC CCCTACTTCGACATGTTTGCGCAAGATGTATGCATGTATGTATCTCCGCC CGCTCTCTCCTGATACGTATGTATGTAGTTTATTTTTCTTTTTTCTTTTT CCATTATTGGCCTATCTATTCGTCGTCTGCCCCACTGGCCCGCTTCCCCC ACTACGACAAGGTAGACGACCCAGCCGGGGTCACACAGGTATCTATCTAT CTACCTCCGTCTCCGCCCACAATTTTCTGTCTGATTCTTCGGTGCGTTGC CGTGGCGGCCTCCTTTTATCTGCCCCCTCTCGCAGTTCCAGTGGGTCATC TACGACTGCGAGACGAGGGGTGTGCAGCTGCTGGAGGAGTTTTCTCCCCG GCCGTTTTTCCTCAAGATGTACCTCCCCTACTTCGACATGTTTGCGCAAG GTTTCACGCCGTGGGCGCCGGACTCCAAGTCCTTCGCGTACGTGTCGGCG GACGCCGCTTTTGTACAAGAGGTTTCACGCCGTGGGCGCCGGACTCCAAG TCCTTCGCGTACGTGTCGGCGGACGCCGCTTTTGTACAAGAGGTACCAGA CGACGGCCTCGCTCCCATGCCGCGGGAGCTCGGGCCTAACATGGAGTTCG TTTCGTGGTCGTTCTGCTGAGCGGAGCGGAGCCGGAGTGAGCAGGGCCAA GCCAAGCTGAGTACCAGACGACGGCCTCGCTCCCATGCCGCGGGAGCTCG GGCCTAACATGGAGTTCGTTTCGTGGTCGTTCTGCTGAGCGGAGCGGAGC CGGAGTGAGCAGGGCCAAGCCAAGCTGA back to top
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