mRNA_L-elsbetiae_contig16279.4288.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16279.4288.1
Unique NamemRNA_L-elsbetiae_contig16279.4288.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16279.4288.1 vs. uniprot
Match: D8LES5_ECTSI (UVR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES5_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 4.040e-49
Identity = 81/88 (92.05%), Postives = 87/88 (98.86%), Query Frame = 2 
Query:  383 QFQWVIYDCETRGVQLLEEFSPRPFFLKMYLPYFDMFAQGFTPWAPDSKSFAYVSADAAFVQEVPDDGLAPMPRELGPNMEFVSWSFC 646
            +FQWVIYDCETR VQLL+EFSPRPFFLKMYLPYFDMFAQGFTPWAPDSKSF+YVSA+A+FVQEVPDDGLAP+PRELGPNMEFVSWSFC
Sbjct:  618 KFQWVIYDCETRDVQLLDEFSPRPFFLKMYLPYFDMFAQGFTPWAPDSKSFSYVSAEASFVQEVPDDGLAPLPRELGPNMEFVSWSFC 705
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BLAST of mRNA_L-elsbetiae_contig16279.4288.1 vs. uniprot
Match: A0A7S3XSM8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSM8_HETAK)

HSP 1 Score: 93.6 bits (231), Expect = 6.930e-18
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 2 
Query:  389 QWVIYDCETRGVQLLEEFSPRPFFLKMYLPYFDMFAQGFTPWAPDSKSFAYVSADAAFVQEVPDDGLAPMPRELGPNMEFVSWSFC 646
            +W + D +T  V    EF+PR F++K+YLP+FD +AQ +TPW+PDS+SF YVS + AFVQ + ++G    P  +    EF +WS+C
Sbjct:  339 RWKVVDVDTGKVTNYPEFTPRTFYIKVYLPFFDQYAQSYTPWSPDSQSFGYVSQEGAFVQRIGEEG----PLRIAKQAEFSTWSWC 420
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BLAST of mRNA_L-elsbetiae_contig16279.4288.1 vs. uniprot
Match: A0A7S1TSH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSH1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.730e-12
Identity = 31/70 (44.29%), Postives = 48/70 (68.57%), Query Frame = 2 
Query:  389 QWVIYDC------ETRGVQLLEEFSPRPFFLKMYLPYFDMFAQGFTPWAPDSKSFAYVSADAAFVQEVPD 580
            +W++YD       +        +F+PRP+F+++YLP+FD +AQ FTPW+PDSKSF +V+ +  FVQ +PD
Sbjct:  570 RWLVYDVHADPESDAPNPVPFPQFTPRPYFMRLYLPFFDQYAQSFTPWSPDSKSFVFVAQEGVFVQPLPD 639
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16279.4288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LES5_ECTSI4.040e-4992.05UVR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3XSM8_HETAK6.930e-1845.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1TSH1_9STRA6.730e-1244.29Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16279contigL-elsbetiae_contig16279:968..3751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size912
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16279.4288.1prot_L-elsbetiae_contig16279.4288.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16279 1093..3528 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.9243026-UTR-L-elsbetiae_contig16279:967..10921622815671.9243026-UTR-L-elsbetiae_contig16279:967..1092Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16279 968..1092 +
1691683028.3961382-UTR-L-elsbetiae_contig16279:967..10921691683028.3961382-UTR-L-elsbetiae_contig16279:967..1092Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16279 968..1092 +
1622815671.9712727-UTR-L-elsbetiae_contig16279:3528..37511622815671.9712727-UTR-L-elsbetiae_contig16279:3528..3751Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16279 3529..3751 +
1691683028.4315588-UTR-L-elsbetiae_contig16279:3528..37511691683028.4315588-UTR-L-elsbetiae_contig16279:3528..3751Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16279 3529..3751 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.9372723-CDS-L-elsbetiae_contig16279:1092..14671622815671.9372723-CDS-L-elsbetiae_contig16279:1092..1467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16279 1093..1467 +
1691683028.4047585-CDS-L-elsbetiae_contig16279:1092..14671691683028.4047585-CDS-L-elsbetiae_contig16279:1092..1467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16279 1093..1467 +
1622815671.947799-CDS-L-elsbetiae_contig16279:2103..21741622815671.947799-CDS-L-elsbetiae_contig16279:2103..2174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16279 2104..2174 +
1691683028.414997-CDS-L-elsbetiae_contig16279:2103..21741691683028.414997-CDS-L-elsbetiae_contig16279:2103..2174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16279 2104..2174 +
1622815671.9591813-CDS-L-elsbetiae_contig16279:3410..35281622815671.9591813-CDS-L-elsbetiae_contig16279:3410..3528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16279 3411..3528 +
1691683028.4231055-CDS-L-elsbetiae_contig16279:3410..35281691683028.4231055-CDS-L-elsbetiae_contig16279:3410..3528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16279 3411..3528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16279.4288.1

>prot_L-elsbetiae_contig16279.4288.1 ID=prot_L-elsbetiae_contig16279.4288.1|Name=mRNA_L-elsbetiae_contig16279.4288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp
MYACMYLRPLSPDTYVCSLFFFFLFPLLAYLFVVCPTGPLPPLRQGRRPS
RGHTGIYLSTSVSAHNFLSDSSVRCRGGLLLSAPSRSSSGSSTTARRGVC
SCWRSFLPGRFSSRCTSPTSTCLRKVSRRGRRTPSPSRTCRRTPLLYKRY
QTTASLPCRGSSGLTWSSFRGRSAERSGAGVSRAKPS*
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mRNA from alignment at L-elsbetiae_contig16279:968..3751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16279.4288.1 ID=mRNA_L-elsbetiae_contig16279.4288.1|Name=mRNA_L-elsbetiae_contig16279.4288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2784bp|location=Sequence derived from alignment at L-elsbetiae_contig16279:968..3751+ (Laminarionema elsbetiae ELsaHSoW15)
CACATAAATATGGAGGGTTGTATGTAGAAGCTACACACGTTTCCTTGCTG
TGGTGCTGCTGCTGCTGTTTCAGGTCGGTGTTGTCCTCCTCGTTGTCGTC
GTCGCAAATCGGCAGGCGCGCACGTATGTATGCATGTATGTATCTCCGCC
CGCTCTCTCCTGATACGTATGTATGTAGTTTATTTTTCTTTTTTCTTTTT
CCATTATTGGCCTATCTATTCGTCGTCTGCCCCACTGGCCCGCTTCCCCC
ACTACGACAAGGTAGACGACCCAGCCGGGGTCACACAGGTATCTATCTAT
CTACCTCCGTCTCCGCCCACAATTTTCTGTCTGATTCTTCGGTGCGTTGC
CGTGGCGGCCTCCTTTTATCTGCCCCCTCTCGCAGTTCCAGTGGGTCATC
TACGACTGCGAGACGAGGGGTGTGCAGCTGCTGGAGGAGTTTTCTCCCCG
GCCGTTTTTCCTCAAGATGTACCTCCCCTACTTCGACATGTTTGCGCAAG
GTATGTACCGTGTGTGTGTATGCGCTTGTAAAGCAAACAAGCTACCCTAC
CCTACTCTACCCTCCGTCGCCGCCTGTGGGTGCGGAGAAAAAGGCCACAC
GGCTCCTTCCTGGGTGTTGAAGAACGCTCCCTTCCTGTGTTGCATTTTGT
TTTGTTTTTTTGTTGAAGGATGCCTTCGGCTTTCGTCAAACTTTTCGTCT
GTTGTTTCGAGGGATTTTTCCTTCTCTTTCTTTTTGTTTTTGCGAAAGTG
GTTGTCGCGCCTTTTCTTTCGTTCACTCCCCGCGCGCGCGCGCCCGCCCT
TCCTGCCTCCCTCTCAATACGTGTTCTCCCCTACCCCGCTGTGCACAAGA
TGGGTGGATCAAATACTTAATTTCCCTTCTCTTTGGGCTTCTTCATCGCT
CGAAAAAAAAAACTTCTGTGAAAACCCATCTCGTGGGAGTATGCTGCACC
TTTCATTTGTGCTGAACGTTCCCACAGGAATCGACCTGGTCAGTGTTGCG
GTTACGTAGCACGGACTCATAGAGGTACTGGATAGATAGATCGGGACGGT
TTTTAATGTGAAGACAACAACAATAGCAGGTTCTCTGACAACGAAAACCA
CGCCCGCCCGATGCTTCCTTGTTCCGTGATCACCAGGTTTCACGCCGTGG
GCGCCGGACTCCAAGTCCTTCGCGTACGTGTCGGCGGACGCCGCTTTTGT
ACAAGAGGTGCGGTTATTTCGCTTTTTTTTAGAAACATCAACAGCAACAT
GCGTTTTCGAAGTCTTTGTGAGTTTTCTTACTTAAACCCTCAAGGTTTGC
GGGAAAAGACAACATCAACAACAACAACATACGTTTTCGAAGTCTTTGTG
AGTTTTTCTTAGTCAAATCCTCCAGGTTTGCGCGGAAAGAGAGAGGGGGG
CGGGCGAGCGGTCGGTCGGTCGCAAGCAGCCGATTTCCCCAAACAGGGCT
CAACGATTTCTGCACGTTTACAGTCCCACGATGCCGTTGTTTCGTTTTTT
ATCCTTGGCTTGGTGCTTCCTGACCTCTGTCAAGTCAATAGGGCGTAATG
TTTGCACGGCCAACGCGGCTGCCGTGTGTAGGGCAGTTAGCAGCCCCACT
GACTACGCACGCGTGGGGCCTGTTACAGTTGCACTAAGAATGCTTAGAGA
AGATTAACGTGGCACGCGCGCGGCTCACACTTTTGCCCGGCAGGCGTTGT
TCTCCCTCTCGCCCCATCAAGAAAGCCAGACATATTTACAGCCAAAGAAA
GATACCACGTGGTATATTCCAGCTGCATACACTCTTGCGGAACAACGGCG
GTTTGGGATGACGGCAGGATACGCTTGATCACGCACGTCAAGTAAAAGGC
CCAGAGCTCTTACGCGACCATTTTTGTGTCCGACTTGAAGTCCGGTTTGA
GTATATTTACGTGCCCCGTTTTTTGTCTTTCCTCGGAGAAGGTACCGCGT
TTTTTTGCTTTACAACAAATTTACCCCCCCCCCCTCCCCCCGACAGAGCT
TGCGATTTTATTGTTGATGTGCGTGCAGAAGTCAAAAATTTTGAACGCAT
TCTCGGCGGGAGTGACTTTTTCTTGCGAAGTGACTTTTTTTCTCTCGCTT
CCGTCCCTGTCAGTGGATAGTGCTTATGTAGCGTGTGTACACAAACTTCA
ACCTCACCGTCGACGAGGGAAAGGGACGGGACGGCTGGACCCTTCTCGCG
ATAAAAATAGTAGGCAAGCACCGCAGACGGGGGTTCTGTGTGACCACGGT
TCGGTACTCTGGCAAGATGTCTTCGTGACAAGGGAGCCCATCGAGCACTG
GAAATAAATGTGAACCGAAAAAAAAGCTTGTACATGTTCTACCAGCAGGT
CTGCTTTTACAAAATATATAAAGTATATTTCGAAGCATATGTATATATGC
CAACGTCGCTTGGGCTCCCCCCCGTTCGAAAATGCATCTTCAGGTACCAG
ACGACGGCCTCGCTCCCATGCCGCGGGAGCTCGGGCCTAACATGGAGTTC
GTTTCGTGGTCGTTCTGCTGAGCGGAGCGGAGCCGGAGTGAGCAGGGCCA
AGCCAAGCTGAACCGGAAGGAGTTTCGCCGCTCTGGACTCGGGATCTGGT
TCACCGAGTCGGAGAGGTTATCGGTGTGTCCCGCCTAAAGTATCTCCGCG
GTCGGCTGCTGGTCGAGTTACGCGGCCGTTTTTGTCGATTGCCGGTCGGT
GTAGCCAGCCGGCCACGGAGGGGCTTGGAAGACAGGCTAATAGCTGATGG
TCCAGTGATCTCCTGCGTCGTTGCTCGTGGTTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16279:968..3751+

>mRNA_L-elsbetiae_contig16279.4288.1 ID=mRNA_L-elsbetiae_contig16279.4288.1|Name=mRNA_L-elsbetiae_contig16279.4288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1128bp|location=Sequence derived from alignment at L-elsbetiae_contig16279:968..3751+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGCATGTATGTATCTCCGCCCGCTCTCTCCTGATACGTATGTATG
TAGTTTATTTTTCTTTTTTCTTTTTCCATTATTGGCCTATCTATTCGTCG
TCTGCCCCACTGGCCCGCTTCCCCCACTACGACAAGGTAGACGACCCAGC
CGGGGTCACACAGGTATCTATCTATCTACCTCCGTCTCCGCCCACAATTT
TCTGTCTGATTCTTCGGTGCGTTGCCGTGGCGGCCTCCTTTTATCTGCCC
CCTCTCGCAGTTCCAGTGGGTCATCTACGACTGCGAGACGAGGGGTGTGC
AGCTGCTGGAGGAGTTTTCTCCCCGGCCGTTTTTCCTCAAGATGTACCTC
CCCTACTTCGACATGTTTGCGCAAGATGTATGCATGTATGTATCTCCGCC
CGCTCTCTCCTGATACGTATGTATGTAGTTTATTTTTCTTTTTTCTTTTT
CCATTATTGGCCTATCTATTCGTCGTCTGCCCCACTGGCCCGCTTCCCCC
ACTACGACAAGGTAGACGACCCAGCCGGGGTCACACAGGTATCTATCTAT
CTACCTCCGTCTCCGCCCACAATTTTCTGTCTGATTCTTCGGTGCGTTGC
CGTGGCGGCCTCCTTTTATCTGCCCCCTCTCGCAGTTCCAGTGGGTCATC
TACGACTGCGAGACGAGGGGTGTGCAGCTGCTGGAGGAGTTTTCTCCCCG
GCCGTTTTTCCTCAAGATGTACCTCCCCTACTTCGACATGTTTGCGCAAG
GTTTCACGCCGTGGGCGCCGGACTCCAAGTCCTTCGCGTACGTGTCGGCG
GACGCCGCTTTTGTACAAGAGGTTTCACGCCGTGGGCGCCGGACTCCAAG
TCCTTCGCGTACGTGTCGGCGGACGCCGCTTTTGTACAAGAGGTACCAGA
CGACGGCCTCGCTCCCATGCCGCGGGAGCTCGGGCCTAACATGGAGTTCG
TTTCGTGGTCGTTCTGCTGAGCGGAGCGGAGCCGGAGTGAGCAGGGCCAA
GCCAAGCTGAGTACCAGACGACGGCCTCGCTCCCATGCCGCGGGAGCTCG
GGCCTAACATGGAGTTCGTTTCGTGGTCGTTCTGCTGAGCGGAGCGGAGC
CGGAGTGAGCAGGGCCAAGCCAAGCTGA
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