mRNA_L-elsbetiae_contig1626.4276.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1626.4276.1 vs. uniprot
Match: D7G330_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G330_ECTSI) HSP 1 Score: 404 bits (1037), Expect = 3.030e-132 Identity = 217/315 (68.89%), Postives = 248/315 (78.73%), Query Frame = 2 Query: 188 YISTMATIQAAQEAAENVIDVTTSILKIGEDMPLVGGLCTAVLNAKDMVDEASRNKEELDKLCARCRGITVQVVEKLRGTPSLNIDVSTLEGCVEELEKVAKRYGRKCWCTRLAQFRKDGEDIQDLRTRIDSAINDLTAAGVVEM-NLALQQFGEILARLQPGPKLAXXXXXXXXXXSFHVVRDGVVDRVCKILGGDGGPAVAALTGQSGAGKTTSAAAMVGERQGPIRPRVGETENQARTRLDCLRAHFSDGVVWLQVGMGEGATDRLPTLMRKLAKALHEDVMKSHVDAPTLGEAGESYVKRIVEQESLRCAL 1129 Y+S MAT VI+VTTSILKIGED+P VGGLCTAVLNAKDMVD+AS N+ +L+KLC RC GITVQVVEKL+G L ++VS LE CV+ELE+VA+RYG+K CTRL F+KD EDI+DL RI +AI+DLTAAGVVE+ NL QQ GEILARLQP PKLA S+H +RDGVVDRV ILGGDGGPAVAAL G+SGAGKTT+AAAMVGERQGPI P E E QA TRLD LRA FSDGVVWL+VG G G DRLP LMRKLAKALHE+V+KS+VD P +GE GESYVK+IVEQESL+C + Sbjct: 8 YVSIMAT---------EVIEVTTSILKIGEDIPFVGGLCTAVLNAKDMVDKASDNQAKLEKLCERCCGITVQVVEKLKGPTPLMVNVSPLEDCVKELEEVAERYGKKSCCTRLTHFQKDDEDIRDLEKRISTAIDDLTAAGVVEVGNLMQQQVGEILARLQPRPKLAPVPPGVPMGQSWHTMRDGVVDRVYDILGGDGGPAVAALGGRSGAGKTTAAAAMVGERQGPIHPLARENEEQAGTRLDRLRARFSDGVVWLRVGKGAGVADRLPLLMRKLAKALHEEVLKSYVDGPGIGEDGESYVKKIVEQESLKCRV 313
BLAST of mRNA_L-elsbetiae_contig1626.4276.1 vs. uniprot
Match: A0A6H5JSI2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI2_9PHAE) HSP 1 Score: 308 bits (790), Expect = 1.620e-87 Identity = 165/264 (62.50%), Postives = 195/264 (73.86%), Query Frame = 1 Query: 1126 LVVADDACEPQVVEKLRETGMWVLMTTRLPEMVETNERVVMDTLTET*AEDVLRGAAELPRGERLCDAAVRVLKICGGVAMDIAFVGSWIRHVETK---RKEDVWARAVENIEAQGGRV-----------DAGRADNRRAVLRAGFEYLGTENVLAQKLYAELAVFPDGHAFGKSDAAVLLGDGEVATKPMSILERWGVLKADASQKYRIHDAHADFARGELMGWDKIRKPAVERWTKHISRLNFAAEMDVYALLRMWRALEKV 1875 LVVADD E VV+KLRETGMWVL+TTR PEM E ERVVMDTL AEDVLRGAAELP GERLCDA+++VL+ICG VAMD AFVGSW T + W R VE + AQ V D RA NR AVLRAGF+Y+G E+ LAQ+LY +LAVFP+G FG+SDAAVLL + EVA P+SILERWGVL+ DAS+KYR HDAHADFAR +LM + +R+PAVERWT+HISRL+FA ++++ LL MWRALE+V Sbjct: 296 LVVADDVWEASVVQKLRETGMWVLLTTRFPEMGEPEERVVMDTLIPAEAEDVLRGAAELPLGERLCDASMKVLEICGRVAMDTAFVGSWTSVRTTNGVPKSNKAWERTVEELTAQIDHVRGQMKVGNTGEDNDRAINRLAVLRAGFKYIGREDPLAQELYVKLAVFPEGFLFGESDAAVLLENEEVAKGPISILERWGVLRTDASEKYRTHDAHADFARKKLMDRNDLREPAVERWTEHISRLDFAVGVEIFVLLPMWRALEEV 559
BLAST of mRNA_L-elsbetiae_contig1626.4276.1 vs. uniprot
Match: A0A6H5KE50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE50_9PHAE) HSP 1 Score: 293 bits (750), Expect = 1.700e-83 Identity = 177/326 (54.29%), Postives = 223/326 (68.40%), Query Frame = 2 Query: 194 STMAT----IQAAQEAAE----NVID-VTTSILKIGEDMPLVGGLCTAVLNAKDMVDEASRNKEELDKLCARCRGITVQVVEKLRGTPSLNIDVSTLEGCVEELEKVAKRYGRKCWCTRLAQFRKDGEDIQDLRTRIDSAINDLTAAGVVEMNLALQQFGEILARLQPGP--KLAXXXXXXXXXXSFHVVRDGVVDRVCKILGGDGGPAVAALTGQSGAGKTTSAAAMVGERQGPIRPRVGETENQARTRLDCL---RAHFSDGVVWLQVGMGEGATDRLPTLMRKLAKALHEDVMKSHVDAPTLGEAGESYVKRIVEQESLRCAL 1129 STMAT +Q+AQE A V++ V T I++IG P+V LC A+L AK +VD ASRNKEEL +LC RC ITVQV++K + + + IDVS L+GCV++L++VAKRY + RLAQFR+DG+DIQ LR RI++ + + AGVV + L+ +ILARLQP P KLA ++H VRD V D V KIL GD PAVAALTG+SGAGK+T+AA MV R+ IR ETE+QARTR+D L RA FSDGVV+L+VG GEGA DRLP LMRKLAKALHEDV+K AP GE GESYVK+++ + RC + Sbjct: 77 STMATRGDAVQSAQETARLGISTVVESVATGIIEIGAATPVVAPLCVALLKAKGIVDGASRNKEELGELCERCDLITVQVIDKAKASNTSTIDVSPLQGCVDKLDEVAKRYHDQGCLARLAQFRRDGDDIQRLRARIEAIVPIMGLAGVVNIMDRLEDVRQILARLQPRPRPKLAPVPPGLPAGEAWHAVRDHVEDEVYKILSGDE-PAVAALTGKSGAGKSTAAADMVRNRKVDIRGLDDETEDQARTRMDRLERVRARFSDGVVYLRVGKGEGAADRLPDLMRKLAKALHEDVLKKTAGAPEAGEKGESYVKKMMTRTKKRCLV 401
BLAST of mRNA_L-elsbetiae_contig1626.4276.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI) HSP 1 Score: 194 bits (493), Expect = 7.220e-49 Identity = 117/270 (43.33%), Postives = 166/270 (61.48%), Query Frame = 1 Query: 1126 LVVADDACEPQVVEKLRETGMWVLMTTRLPEMVETN--ERVVMDTLTET*AEDVLRGAAELPRGERLCDAAVRVLKICGGVAMDIAFVGSWIRHVETKRKEDVWARAVENIEAQGGRV----DAGRADN-----RRAVLRAGFEYL--GTENVLAQKLYAELAVFPDGHAFGKSDAAVLLGDGEVATKP-------MSILERWGVLKADASQKYRIHDAHADFARGELMGWDKIRKPAVERWTKHISRLNFAAEMDVYALLRMWRALEKV 1875 LVVAD+ E VV KL ETGMWVL++TR +V+ + + VV+D L++ AE VL+ AAELPR RL D AV ++K+CG VAMD+AFVG W V + W+ A I + +V D A+N R+A+L+ GFE L G+++ Q+LY LAV PDGHAF DAAVLL D +T+ + +LERW ++++ A YR+HDAH DFAR L+ +R+PA++RWT+++S L+ D Y L +W A+E++ Sbjct: 307 LVVADNVWEEDVVSKLVETGMWVLLSTRDEAVVKRSRGKAVVVDELSQADAESVLKRAAELPRESRLPDDAVDLIKLCGRVAMDVAFVGRWST-VRGRHDPASWSDAASTIRTEMEKVGHDPDNDSAENIPAKRRKAILQGGFEDLAIGSDDERVQRLYLSLAVMPDGHAFSLKDAAVLLYDRSPSTEDEASAGGVVDVLERWSIIRS-AQGTYRMHDAHTDFARECLLDRGHVRRPALKRWTRYLSSLDILRSTDRYVLKGLWLAIERL 574
BLAST of mRNA_L-elsbetiae_contig1626.4276.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE) HSP 1 Score: 186 bits (473), Expect = 2.220e-46 Identity = 120/270 (44.44%), Postives = 160/270 (59.26%), Query Frame = 1 Query: 1126 LVVADDACEPQVVEKLRETGMWVLMTTRLPEMV-ETNERVV-MDTLTET*AEDVLRGAAELPRGERLCDAAVRVLKICGGVAMDIAFVGSWIRHVETKRKEDVWARAVENIEAQGGRVDAGRADN---------RRAVLRAGFEYL--GTENVLAQKLYAELAVFPDGHAFGKSDAAVLLGDGEVATKP-------MSILERWGVLKADASQKYRIHDAHADFARGELMGWDKIRKPAVERWTKHISRLNFAAEMDVYALLRMWRALEKV 1875 LVVAD+ E +VV KL ETGMWVL++TR +V E + VV +D L+E A VLR AAELP ++ AV ++++CG VAMD+AFVG W V ++ W+ AV + + G+V +G A R+A+LRAGFE L G+++ Q+LY LAVFPDGHAF DAAVLL D E + + LERW VL+++ YR+HDAH+ FAR LM +R+PAV+RW IS L D Y L +W A+E V Sbjct: 163 LVVADNVWEKEVVSKLLETGMWVLLSTRNITLVTEAHGEVVGVDELSEADAMSVLRRAAELPPQGKIPGDAVDLIELCGRVAMDLAFVGRWST-VRGRQDRMAWSDAVSKVREEMGKVGSGDASEKLAETRDARRKAILRAGFEDLAIGSDDERVQRLYLSLAVFPDGHAFTVRDAAVLLYDREPCAEDEASVAVVVDTLERWTVLRSEQGA-YRMHDAHSIFARETLMDHGYVRRPAVKRWVSSISCLEVLRSSDPYVLKGLWLAVEGV 430
BLAST of mRNA_L-elsbetiae_contig1626.4276.1 vs. uniprot
Match: A0A6H5K0A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A6_9PHAE) HSP 1 Score: 181 bits (459), Expect = 6.810e-46 Identity = 101/152 (66.45%), Postives = 114/152 (75.00%), Query Frame = 2 Query: 614 VEMNLALQQFGEIL--ARLQPGPKLAXXXXXXXXXXSFHVVRDGVVDRVCKILGGDGGPAVAALTGQSGAGKTTSAAA-MVGERQGPIRPRVGETENQARTRLDCLRAHFSDGVVWLQVGMGEGATDRLPTLMRKLAKALHEDVMKSHVDAP 1060 V+ ++ L+Q +L ARL P PKL S+H +RDGVVDRV ILGGDGGPA AAL GQ GAGKTT+AAA MVGERQGPI P E E QARTRLD LRA FSDGV+WL+VG G GA+DRLP LMRKLAKALHE+V+KSHVDAP Sbjct: 254 VDNHVFLRQTPPVLVQARLPPRPKLVSVPPGVPMGQSWHTMRDGVVDRVYAILGGDGGPAAAALGGQRGAGKTTAAAAAMVGERQGPIHPLAHENEEQARTRLDRLRARFSDGVMWLRVGKGAGASDRLPLLMRKLAKALHEEVLKSHVDAP 405
BLAST of mRNA_L-elsbetiae_contig1626.4276.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI) HSP 1 Score: 180 bits (456), Expect = 4.540e-44 Identity = 124/313 (39.62%), Postives = 175/313 (55.91%), Query Frame = 1 Query: 1054 CSNVGRGRRELREED----------RGAGVAAVR-LVVADDACEPQVVEKLRETGMWVLMTTRLPEMVETNERVVM--DTLTET*AEDVLRGAAELPRGERLCDAAVRVLKICGGVAMDIAFVGSWIRHVETKRKEDVWARAVENIEAQGGRVDAGRADN---------RRAVLRAGFEYL--GTENVLAQKLYAELAVFPDGHAFGKSDAAVLLGDGEVATKP-------MSILERWGVLK--------ADASQKYRIHDAHADFARGELMGWDKIRKPAVERWTKHISRLNFAAEMDVYALLRMWRALEKV 1875 C VG GRR +D RG G ++ LVVAD+ E +VV KL ETGMWVL++TR E+V +E V+ D ++E AE VLR A+ELP RL D AV ++++CG VAMD+AFVG W V + W+ A + A+ G+++ R R+AVL+AGFE L G+++ Q+LY LAV PDG F DAAVLL D + + + + ILERW VL+ A Y +HDAH+DFAR +LM +R+PA+ RWT++IS L+ + + + +W +E+V Sbjct: 293 CEEVG-GRRPATSDDGAAYIKEKMQRGHGGKGLKCLVVADNVWEKEVVWKLLETGMWVLLSTRDEELVVGSEGEVVGVDEMSEVEAESVLRKASELPPETRLPDDAVDLIELCGRVAMDLAFVGRWST-VRGRSDRTAWSDAAGKVRAEMGKIEGERVSGTVVETRDARRKAVLQAGFEDLASGSDDERVQRLYLSLAVLPDGRGFTVKDAAVLLYDRKPSAEDEASAAGVVEILERWSVLRSIRGCYRMAWRGGHYVLHDAHSDFAREKLMDRGDVRRPALVRWTRNISSLDTLRSVRWHDVRDLWLGVEQV 603
BLAST of mRNA_L-elsbetiae_contig1626.4276.1 vs. uniprot
Match: A0A6H5KUE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE6_9PHAE) HSP 1 Score: 168 bits (425), Expect = 1.450e-43 Identity = 103/201 (51.24%), Postives = 128/201 (63.68%), Query Frame = 2 Query: 518 TRLAQFRKDGEDIQDLRTRIDSAINDLTAAGVVEMNLALQQFGEILARLQPGPKLAXXXXXXXXXXSFHVVRDGVVDRVCKILGGDGGPAVAALTGQSGAGKTTSAAAMVGERQGPIRPRVGETENQARTRLDCLRAHFSDGVVWLQVGMGEGATDRLPTLMRKLAKALHEDVMKSHVDAPTLGEAGESYVKRIVEQESLR 1120 +RLA+FR G++IQ LR I + + + AGVV ++ L++ +LARLQP P+LA S+ VR GV DRVC+ILGG PAVAALTG+SG GKTTSAAA++ ER GPI PR GETE+ ARTRLD GEG +R P+LM LAKA +EDVM+ VD P GE GESYV + V +ESLR Sbjct: 27 SRLARFRAFGDNIQGLRASIKAVVPIMGLAGVVNLDEKLEK---VLARLQPRPQLAPVPEGIPVRQSWPAVRHGVEDRVCRILGGGRRPAVAALTGRSGTGKTTSAAAVLRER-GPIHPRAGETEDMARTRLD----------------RGEGDENRSPSLMHTLAKARYEDVMEKRVDTPAAGEDGESYVNKFVSRESLR 207
BLAST of mRNA_L-elsbetiae_contig1626.4276.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI) HSP 1 Score: 172 bits (436), Expect = 1.350e-41 Identity = 115/285 (40.35%), Postives = 158/285 (55.44%), Query Frame = 1 Query: 1099 RGAGVAAVR---LVVADDACEPQVVEKLRETGMWVLMTTRLPEMVETNERVVM--DTLTET*AEDVLRGAAELPRGERLCDAAVRVLKICGGVAMDIAFVGSWIRHVETKRKEDVWARAVENIEAQ----GGRVDAGRADN------RRAVLRAGFEYLGTENVLAQKLYAELAVFPDGHAFGKSDAAVLLGDG-----------EVATKPMSILERWGVLKADASQKYRIHDAHADFARGELMGWDKIRKPAVERWTKHISRLNFAAEMDVYALLRMWRALEKV 1875 RG G AA R LVVADD E ++E+LR TGMWVL T+R P++VE E V+ D L++ AE +LRGAAEL G L AA +V++ C +A + FVG W V+ E+ WA AV I+A+ G +A ++D R A+LRAGF L +N LY LAV PDG AFG +AAV L D A K ++ LE+W V+ + +R+HDAH+DFAR +L + +R A+ RW SRL+ MD + ++ +W A E + Sbjct: 360 RGKGSAAGRKRCLVVADDVWEVDILEELRHTGMWVLFTSRDPDLVERVEGSVVPVDQLSKAEAECLLRGAAELSTGSSLPSAAAQVIERCDRMANRLEFVGRWST-VKGSDDEEDWAEAVSAIDAEMSAMAGEANAQKSDEDLSGVKRVAILRAGFLDLAAQNGFNPLLYLSLAVMPDGRAFGAKEAAVFLFDDWAEERASQRRTRQAAKVVANLEQWAVVTMHGNL-FRMHDAHSDFARNKLKRSEDVRASALRRWRGFTSRLDTIRSMDYFEMVDLWHATEMI 642
BLAST of mRNA_L-elsbetiae_contig1626.4276.1 vs. uniprot
Match: A0A6H5L204_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L204_9PHAE) HSP 1 Score: 125 bits (314), Expect = 4.410e-27 Identity = 89/221 (40.27%), Postives = 117/221 (52.94%), Query Frame = 1 Query: 1219 MVETNERVVMDTLTET*AEDVLRGAAELPRGERLCDAAVRVLKICGGVAMDIAFVGSW--IRHVETKRKEDVWA--RAVENIEAQGGRVDAGRADNRRAVLRAGFEYLGTENVLAQKLYAELAVFPDGHAFGKS-----------DAAVLLGDGEVATKPMSILERWGVLK-----------ADASQKYRIHDAHADFARGELMG-WDKIRKPAVERWTKH 1800 M+ ERV +D L T A +VLRGAA LPR LCD A++VL+ GGVAMDIAFVGSW +R ++ + WA RAVE IEAQGG V R NR A+LRAGF YL + LAQ+LY +LA FPD H+F DA + + + + E W V + +DASQ + +H GE +G + I + +E + H Sbjct: 1 MLSLAERVFVDKLGATDASNVLRGAANLPRDGDLCDDALKVLETYGGVAMDIAFVGSWSSVRTPDSCAPKSSWAWTRAVEEIEAQGGGVGVDRDANRLAILRAGFMYLARDYPLAQELYDKLAAFPDRHSFRSQTQLRFWTTKRVDAYAMFNMRKTSEEAGG--EGWWVYRPHDEQLIPMEASDASQVHAVHVLAELCCHGEKLGELEAIMRKLLEHYDAH 219 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1626.4276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1626.4276.1 >prot_L-elsbetiae_contig1626.4276.1 ID=prot_L-elsbetiae_contig1626.4276.1|Name=mRNA_L-elsbetiae_contig1626.4276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=325bp MATIQAAQEAAENVIDVTTSILKIGEDMPLVGGLCTAVLNAKDMVDEASRback to top mRNA from alignment at L-elsbetiae_contig1626:8125..10719- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1626.4276.1 ID=mRNA_L-elsbetiae_contig1626.4276.1|Name=mRNA_L-elsbetiae_contig1626.4276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2595bp|location=Sequence derived from alignment at L-elsbetiae_contig1626:8125..10719- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1626:8125..10719- >mRNA_L-elsbetiae_contig1626.4276.1 ID=mRNA_L-elsbetiae_contig1626.4276.1|Name=mRNA_L-elsbetiae_contig1626.4276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1950bp|location=Sequence derived from alignment at L-elsbetiae_contig1626:8125..10719- (Laminarionema elsbetiae ELsaHSoW15)back to top |