mRNA_L-elsbetiae_contig16232.4263.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16232.4263.1
Unique NamemRNA_L-elsbetiae_contig16232.4263.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16232.4263.1 vs. uniprot
Match: A0A6H5K5X7_9PHAE (MRG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5X7_9PHAE)

HSP 1 Score: 439 bits (1130), Expect = 2.090e-150
Identity = 240/264 (90.91%), Postives = 249/264 (94.32%), Query Frame = 1
Query:    1 QVIKLKPSGDQFTYFLHYMGWNSRWDKWVVESDLMAAGPEALEMQKQLKEKKKKQKVSAAKRXXXXXXXXXXXXXXXXIKRARVDVKKDTEDDTGVAEVKVAMPFTLKKQLVTDWENVTQEPRRLVKLPRELTAADVMKQYMDSKANRSTPQQMARAQELMDGVRIYFDKALPLILLYRQERTQYDITVQKHPGKSPSEIYGAEHLLRVFVRLPQLLAQSALTASEVTQVQKLLGDFLRFMQKNHATFFVQEYEEEEPEEPQTA 792
            +VIKLKPSG+QFTYFLHYMGWNSRWDKWVVESDLMAAGPEALEMQ+QLK+KKKK KV+AAKR    XXXXXXXXXXXX KRARVDVKKDTEDD+GV EVKVAMPFTLKKQLVTDWE+VTQEPRRLVKLPRE+TAADVM QYMDSKANR TPQQ ARAQELMDGVRIYFDKALPLILLYRQERTQYDITVQK PGKSPSEIYGAEHLLRVFVRLPQLLAQSALT  EVTQVQKLL DFLRFMQKNHA FFVQEYE+EEPEEPQTA
Sbjct:   36 KVIKLKPSGEQFTYFLHYMGWNSRWDKWVVESDLMAAGPEALEMQQQLKDKKKKAKVNAAKRKEDQXXXXXXXXXXXXXKRARVDVKKDTEDDSGVTEVKVAMPFTLKKQLVTDWEHVTQEPRRLVKLPREVTAADVMAQYMDSKANRGTPQQTARAQELMDGVRIYFDKALPLILLYRQERTQYDITVQKLPGKSPSEIYGAEHLLRVFVRLPQLLAQSALTPPEVTQVQKLLADFLRFMQKNHAAFFVQEYEDEEPEEPQTA 299          
BLAST of mRNA_L-elsbetiae_contig16232.4263.1 vs. uniprot
Match: A0A836CM09_9STRA (Putative chromatin binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM09_9STRA)

HSP 1 Score: 231 bits (589), Expect = 9.850e-69
Identity = 135/268 (50.37%), Postives = 187/268 (69.78%), Query Frame = 1
Query:    1 QVIKLKPSGD-QFTYFLHYMGWNSRWDKWVVESDLMAAGPEALEMQKQLKEKKKKQKVS--AAKRXXXXXXXXXXXXXXXXI------------KRARVDVKKDTEDDTGVAEVKVAMPFTLKKQLVTDWENVTQEPRRLVKLPRELTAADVMKQYMDSKANRSTPQQMARAQELMDGVRIYFDKALPLILLYRQERTQYDITVQKHPGKSPSEIYGAEHLLRVFVRLPQLLAQSALTASEVTQVQKLLGDFLRFMQKNHATFFVQEY 759
            +++KLK + D +  YF+HY+GWNSRWDKW  E +LM  GPE+ E+QK+LK++ K+++ +  AA R       XXXXXXXXX             K+ R+D K  TEDD+ +A++K+ +PFTLK+QLV DWENVTQEPR L+ LPR  TAA V+  +++SK    T  Q+AR +EL+DG+R+YFD+ALPLILLY  ER  +   V  + G++ SE+YGAEHLLR+F +LP LLAQ+ L ++EV Q+Q  LG+FL++MQKN    F  +Y
Sbjct:   31 RIMKLKQTDDGKHHYFVHYLGWNSRWDKWSEEQELMPDGPESEELQKRLKDEIKQRQGAPKAAVRKSISGGGXXXXXXXXXXXXXXXXXXXAARKKPRIDTKAATEDDSELAQIKLPIPFTLKRQLVQDWENVTQEPRCLLPLPRARTAAHVLDAFIESKRGACTAAQLARFRELVDGLRLYFDRALPLILLYAHEREHHAAVVAHNKGRAASELYGAEHLLRLFTKLPALLAQTNLNSNEVGQLQAKLGEFLKYMQKNAGELFHGDY 298          
BLAST of mRNA_L-elsbetiae_contig16232.4263.1 vs. uniprot
Match: A0A7S2RY99_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RY99_9STRA)

HSP 1 Score: 194 bits (493), Expect = 1.170e-54
Identity = 106/251 (42.23%), Postives = 155/251 (61.75%), Query Frame = 1
Query:   10 KLKPSGDQFTYFLHYMGWNSRWDKWVVESDLMAAGPEALEMQKQLKEKKKKQKVSAAKRXXXXXXXXXXXXXXXXIKRARVDVKKDTEDDT-GVAEVKVAMPFTLKKQLVTDWENVTQ-EPRRLVKLPRELTAADVMKQYMDSKANRSTPQQMARAQELMDGVRIYFDKALPLILLYRQERTQYDITVQKHPGKSPSEIYGAEHLLRVFVRLPQLLAQSALTASEVTQVQKLLGDFLRFMQKNHATFFVQE 756
            K++  G    YF+HY GW+ +WD+WV  S L+  GP A +M K+L  ++++++ +AA+                  K+AR+D ++D E    G  E+K+ +PFTLKK+LV DWE +TQ  P ++V LPR      ++ +Y++SK  RS+ Q   R  EL  G+R YFD ALP+ LLYRQER QY   VQ HP  + SE+YGAEHLLR+F +LPQ+L ++ L + E  Q+Q  LG+F ++MQ+     F QE
Sbjct:   54 KVRRVGQDGQYFIHYQGWSKKWDRWVHCSLLLKEGPAADKMSKKLMAEEQQRQETAARLKREARADEKSSQEK---KKARIDHQRDVEAPAQGTFELKLPLPFTLKKKLVEDWERITQTSPGQVVPLPRTPCVKGIIDEYLESKKERSSSQNHQRLTELFGGLRTYFDAALPITLLYRQERAQYYQYVQDHPDATMSEVYGAEHLLRLFTKLPQILGRARLASVEAAQLQTNLGEFFKYMQRQATDLFTQE 301          
BLAST of mRNA_L-elsbetiae_contig16232.4263.1 vs. uniprot
Match: A0A4D9CY10_9STRA (MRG domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CY10_9STRA)

HSP 1 Score: 186 bits (473), Expect = 7.760e-51
Identity = 116/292 (39.73%), Postives = 160/292 (54.79%), Query Frame = 1
Query:    1 QVIKLKPSGDQFTYFLHYMGWNSRWDKWVVESDLMAAGPEALEMQKQLKEKKKKQKVSAAKRXXXXXXXXXXXXXXXXIKRAR----VDVKKDTEDDTGVA-------EVKVAMPFTLKKQLVTDWENVTQEPRRLVKLPRELTAADVMKQYMDSKANRSTPQ--QMARAQELMDGVRIYFDKALPLILLYRQERTQYDITVQKHPGKS--------------------PSEIYGAEHLLRVFVRLPQLLAQSALTASEVTQVQKLLGDFLRFMQKNHATFFVQEYEEEEPE 777
            Q ++    G    YF+HY GW S+WD+WV   DL+     +L++Q QL++  K++    A++                 KR +     DV +  + D   A       +VK+AMPFTLKKQLV DWE VT+ P  LV LPR  +AA V+  ++  K  + T    Q+AR +E++ G+R YFDKALPLILLYR ER QY       P  S                    PS++YGAEHLLR+FVRLP+LLA + L  +E+TQVQ  LG+ L+F+QK H   F+  Y ++E E
Sbjct:   68 QKVQEGKKGSAPQYFIHYQGWKSKWDRWVGAEDLLPKDEHSLKLQAQLRQAAKRRPGPVAEKEDGREGG---------FKRGKGEGGEDVSRPADPDLEPAPEKNSDPQVKLAMPFTLKKQLVDDWELVTRPPHHLVPLPRSPSAAAVLSSFLAHKKEQGTASTVQLARLEEMLHGLREYFDKALPLILLYRHEREQYASLFPAAPPSSACRPTSTEPALGSSSGAAPRPSDVYGAEHLLRLFVRLPRLLALAPLAPAEMTQVQAKLGELLKFLQKQHGEIFLTSYMKKEEE 350          
BLAST of mRNA_L-elsbetiae_contig16232.4263.1 vs. uniprot
Match: A0A7S2GFK6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GFK6_9STRA)

HSP 1 Score: 182 bits (461), Expect = 3.490e-50
Identity = 101/235 (42.98%), Postives = 152/235 (64.68%), Query Frame = 1
Query:   76 DKWVVESDLMAAGPEALEMQKQLKEKKKKQKVSAAKRXXXXXXXXXXXXXXXXIKRARVDVKKDTED-DTGVAEVKVAMPFTLKKQLVTDWENVTQ-EPRRLVKLPRELTAADVMKQYMDSKANRSTPQQMARAQELMDGVRIYFDKALPLILLYRQERTQYDITVQKHPGKSPSEIYGAEHLLRVFVRLPQLLAQSALTASEVTQVQKLLGDFLRFMQKNHATFFVQEYEEEEP 774
            DKWV  S +MA GPEA +  K+L + +KK++ +  K                  K+ R+DV +  E  D    ++K+ +PFTLKKQLV DWE+++Q +P  LV LPR+ T +DV+ ++++ KA R++  +     EL++G+RIYFD +LP+ILLY QER Q+    ++HP    S+IYGAEHLLR+F +LP +L ++ L + E  Q+Q  LG+FL+++QKNHAT F++ YEE  P
Sbjct:    1 DKWVHASLMMAEGPEAEKYAKKLADAEKKREEAKVKARAGEKEAAGQSRR----KKPRIDVGRALEAADETAPQIKLPLPFTLKKQLVDDWESISQMDPHMLVTLPRKPTVSDVISEFLEFKAKRTSTAKQQHLTELLEGLRIYFDNSLPVILLYPQERQQFADITKQHPDVPVSKIYGAEHLLRLFTKLPHVLGKARLASVESAQLQTNLGEFLKYLQKNHATIFLKNYEEYTP 231          
BLAST of mRNA_L-elsbetiae_contig16232.4263.1 vs. uniprot
Match: A0A2D4BDJ4_PYTIN (Chromatin modification-related protein EAF3, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDJ4_PYTIN)

HSP 1 Score: 185 bits (470), Expect = 1.710e-48
Identity = 105/268 (39.18%), Postives = 154/268 (57.46%), Query Frame = 1
Query:   10 KLKPSGDQFTYFLHYMGWNSRWDKWVVESDLMAAGPEALEMQKQLKEKKKKQ----KVSAAKRXXXXXXXXXXXXXXXXIKRARVDVKKDTE-------DDTGVAEVKVAMPFTLKKQLVTDWENVTQEPRRLVKLPRELTAADVMKQYMDSKANRSTPQQMARAQEL------MDGVRIYFDKALPLILLYRQERTQYDITVQKHPGKSPSEIYGAEHLLRVFVRLPQLLAQSALTASEVTQVQKLLGDFLRFMQKNHATFFVQEYE 762
            KLKP+     YF+HY+GW+ +WD+WV  S  +   P   ++Q + KE   K+    + +A K+                 K+ +++ + DTE       D     +V + MPF+LKKQLV DW+++T EPR+LV LPR+ + A ++  Y++ K  +  P   A  +EL      M+G++ YFD+AL  ILLYR ER QY    QKHP    SEIYGAEHL+R+FVRLP LL  + +   E+ Q+Q  L DFL++MQK  ++ F  EY+
Sbjct:   37 KLKPTAST-QYFVHYLGWHKKWDEWVAFSRTLEDTPANRKLQAEAKENAAKEAANKRSAAKKKKISTGGIDPGSTRKSPFKKMKLNPENDTEELPMGNGDFDAARQVALQMPFSLKKQLVEDWKHITHEPRKLVPLPRKPSVAQIIANYLEVKKAKLKPDNAADEKELKNIEGIMEGIQSYFDRALGSILLYRHERQQYQDLQQKHPNTPLSEIYGAEHLVRLFVRLPVLLGSATIPERELAQIQPRLNDFLKYMQKQASSLFTNEYQ 303          
BLAST of mRNA_L-elsbetiae_contig16232.4263.1 vs. uniprot
Match: H3GNF0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GNF0_PHYRM)

HSP 1 Score: 183 bits (465), Expect = 2.370e-48
Identity = 109/275 (39.64%), Postives = 155/275 (56.36%), Query Frame = 1
Query:    4 VIKLKPSGDQFT----YFLHYMGWNSRWDKWVVESDLMAAGPEALEMQKQLKEK---KKKQKVSAAKRXXXXXXXXXXXXXXXXIKRARVDVKKD--------TEDDTGVAEVKVAMPFTLKKQLVTDWENVTQEPRRLVKLPRELTAADVMKQYMDSKANRSTPQQMARAQE------LMDGVRIYFDKALPLILLYRQERTQYDITVQKHPGKSP-SEIYGAEHLLRVFVRLPQLLAQSALTASEVTQVQKLLGDFLRFMQKNHATFFVQEYE 762
            V++ +  G   T    Y+LHY GW  +WD+WV    ++ A P    +QKQ K++    KK K  A K+                 KR +     D        TE+     ++ + MPF+LKKQLV DW+NVTQ P +LV LPR+   + ++K Y++ K ++    + +  +E      +M+GV+ YFD+AL  ILLYR ER QY    QK   + P S+IYGAEHL+R+FVRLP LLA S ++  E+ Q+Q  L DFL+F+QKN A +FV EYE
Sbjct:   31 VLEAEGEGGNATASTQYYLHYQGWAKKWDEWVRHDRVLEASPANRALQKQAKQEVAQAKKDKRLAKKKKISSAGVDTPSSRKSPFKRLKRSTDNDYEEFPGPSTEESAAAKQINIQMPFSLKKQLVEDWKNVTQAPHKLVPLPRKPNVSQIIKTYLEFKKSKVHEDEASEEKEYKNIEGIMEGVQSYFDRALSSILLYRMERRQYQELRQKQAEELPLSQIYGAEHLIRLFVRLPVLLASSNISPRELHQIQARLNDFLKFIQKNSAAWFVTEYE 305          
BLAST of mRNA_L-elsbetiae_contig16232.4263.1 vs. uniprot
Match: K3W9B5_GLOUD (MRG domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9B5_GLOUD)

HSP 1 Score: 177 bits (449), Expect = 5.600e-48
Identity = 103/260 (39.62%), Postives = 148/260 (56.92%), Query Frame = 1
Query:   40 YFLHYMGWNSRWDKWVVESDLMAAGPEALEMQKQLKEK-KKKQKVSAAKRXXXXXXXXXXXXXXXXIKRARVDVKKDTE-----DDTGVA-------EVKVAMPFTLKKQLVTDWENVTQEPRRLVKLPRELTAADVMKQYMDSKANRSTPQQMARAQE------LMDGVRIYFDKALPLILLYRQERTQYDITVQKHPGKSPSEIYGAEHLLRVFVRLPQLLAQSALTASEVTQVQKLLGDFLRFMQKNHATFFVQEYE 762
            Y++HY GW+ +WD+WV    ++   P    +QKQ KE  KKK K +  K+                 K+ + + + DTE     DD  +        ++ + MPF+LKKQLV DW ++TQEP RLV LPR+ T + ++  Y++ K ++      A  +E      +M+G++ YFD+AL  ILLYR ER QY    QK+     SEIYGAEHL+R+FVRLP LL  + L   E+  +Q  L DFL+++QKN AT+F  EYE
Sbjct:   48 YYVHYQGWHKKWDEWVAHDRVLEDTPANRALQKQAKEDAKKKPKSAVPKKKISTSGIDPSAAKKSPFKKLKRNTENDTEEMPSPDDESILSGGGNAKQISIQMPFSLKKQLVEDWRHITQEPYRLVSLPRKPTVSQIINNYLEFKKSKLKEGDEADEKEYKNLEGIMEGIQSYFDRALGSILLYRMERKQYHEIKQKNGDVPVSEIYGAEHLIRLFVRLPILLGGANLPPRELASIQSRLNDFLKYIQKNAATWFSPEYE 307          
BLAST of mRNA_L-elsbetiae_contig16232.4263.1 vs. uniprot
Match: A0A8K1FHE4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHE4_PYTOL)

HSP 1 Score: 172 bits (437), Expect = 2.890e-46
Identity = 100/269 (37.17%), Postives = 156/269 (57.99%), Query Frame = 1
Query:   10 KLKPSGDQFTYFLHYMGWNSRWDKWVVESDLMAAGPEALEMQKQLKEK---KKKQKVSAAKRXXXXXXXXXXXXXXXXIKRARVDVKKDTED-DTGVAEVKVA------MPFTLKKQLVTDWENVTQEPRRLVKLPRELTAADVMKQYMDSKANR-------STPQQMARAQELMDGVRIYFDKALPLILLYRQERTQYDITVQKHPGKSPSEIYGAEHLLRVFVRLPQLLAQSALTASEVTQVQKLLGDFLRFMQKNHATFFVQEYEE 765
            K+ P+  Q  YF+HY GW+ +WD+WV    ++   P + ++Q + KE+   +K  K S AK+                 K+ +V+   DTE+     AE++ A      +PF+LKKQLV DW+ +T EP RLV LPR+   A ++  Y++ K ++       +  ++    + +M+G++ YFD+AL  ILLYR ER QY     K+     S+IYGAEHL+R+FVRLP LL  + +   E++Q+Q  L DFL++MQK+ A+ F+ EY+E
Sbjct:   37 KIAPTS-QTQYFVHYQGWHKKWDEWVSFDRILEDTPASRKLQVEAKERAAEEKANKKSVAKKKINTGGIDPGTARKSPFKKLKVNPDNDTEELPMDKAEMETARQVALQLPFSLKKQLVEDWKRITHEPYRLVPLPRKPCVAQIITNYLEFKKSKLKADDGGADEKEYKNIESIMEGIQAYFDRALSSILLYRFERQQYQEIKSKNEDTPLSQIYGAEHLIRLFVRLPVLLGSATIPERELSQIQPRLNDFLKYMQKHSASLFLNEYQE 304          
BLAST of mRNA_L-elsbetiae_contig16232.4263.1 vs. uniprot
Match: A0A3R7JUX1_9STRA (MRG domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JUX1_9STRA)

HSP 1 Score: 172 bits (435), Expect = 6.250e-46
Identity = 101/262 (38.55%), Postives = 152/262 (58.02%), Query Frame = 1
Query:   40 YFLHYMGWNSRWDKWVVESDLMAAGPEALEMQKQLKEK--KKKQKVSAAKRXXXXXXXXXXXXXXXXIKRARVDVKKDTEDDTGVA------------EVKVAMPFTLKKQLVTDWENVTQEPRRLVKLPRELTAADVMKQYMDSKANR------STPQQMARAQELMDGVRIYFDKALPLILLYRQERTQYDITVQKHPGKSP-SEIYGAEHLLRVFVRLPQLLAQSALTASEVTQVQKLLGDFLRFMQKNHATFFVQEYE 762
            Y+LHY GW  +WD+WV    ++   P   ++Q + KE+  + K++   AK+                 KR +  V  + E+  G +            ++ + MPF+LKKQLV DW+NVTQ P +LV LPR+   + ++K Y++ K ++      S  ++    + +M+GV+ YFD+AL  ILLYR ER QY    QK   + P S+IYGAEHL+R+FVRLP LLA +++   E+ Q+Q  L DFL+F+QKN +T+FV EYE
Sbjct:   47 YYLHYQGWAKKWDEWVRHDRVLEDTPANRKLQLKAKEELAQAKKEKRLAKKKISSAGVDAPSSRKSPFKRMKRSVDNEYEEFPGPSPDGANEETPTAKQINIQMPFSLKKQLVEDWKNVTQAPYKLVPLPRKPNVSQIIKTYLEFKKSKVHEGEASEEKEYKNIEGIMEGVQSYFDRALSSILLYRMERRQYQELRQKQEEEIPLSQIYGAEHLIRLFVRLPVLLASASIPPRELHQIQARLNDFLKFIQKNSSTWFVTEYE 308          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16232.4263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5X7_9PHAE2.090e-15090.91MRG domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CM09_9STRA9.850e-6950.37Putative chromatin binding protein n=1 Tax=Tribone... [more]
A0A7S2RY99_9STRA1.170e-5442.23Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A4D9CY10_9STRA7.760e-5139.73MRG domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S2GFK6_9STRA3.490e-5042.98Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2D4BDJ4_PYTIN1.710e-4839.18Chromatin modification-related protein EAF3, putat... [more]
H3GNF0_PHYRM2.370e-4839.64Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
K3W9B5_GLOUD5.600e-4839.62MRG domain-containing protein n=1 Tax=Globisporang... [more]
A0A8K1FHE4_PYTOL2.890e-4637.17Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7JUX1_9STRA6.250e-4638.55MRG domain-containing protein n=3 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16232contigL-elsbetiae_contig16232:147..3675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score401.4
Seed ortholog evalue3.1e-109
Seed eggNOG ortholog2880.D7FRM2
KEGG koko:K11339
Hectar predicted targeting categoryother localisation
EggNOG free text desc.histone H2A acetylation
EggNOG OGsKOG3001@1,KOG3001@2759
Ec32 ortholog descriptionMRG and Chromo domain protein
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03400
Ec32 ortholog descriptionMRG domain protein
Ec32 orthologEc-12_002520.1
Exons6
Model size1451
Cds size741
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16232.4263.1prot_L-elsbetiae_contig16232.4263.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16232 803..3621 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.372208-UTR-L-elsbetiae_contig16232:146..8021622815670.372208-UTR-L-elsbetiae_contig16232:146..802Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16232 147..802 -
1691683027.5016766-UTR-L-elsbetiae_contig16232:146..8021691683027.5016766-UTR-L-elsbetiae_contig16232:146..802Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16232 147..802 -
1622815670.453717-UTR-L-elsbetiae_contig16232:3621..36751622815670.453717-UTR-L-elsbetiae_contig16232:3621..3675Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16232 3622..3675 -
1691683027.564482-UTR-L-elsbetiae_contig16232:3621..36751691683027.564482-UTR-L-elsbetiae_contig16232:3621..3675Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16232 3622..3675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.382722-CDS-L-elsbetiae_contig16232:802..8231622815670.382722-CDS-L-elsbetiae_contig16232:802..823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16232 803..823 -
1691683027.5116646-CDS-L-elsbetiae_contig16232:802..8231691683027.5116646-CDS-L-elsbetiae_contig16232:802..823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16232 803..823 -
1622815670.3924603-CDS-L-elsbetiae_contig16232:1069..12121622815670.3924603-CDS-L-elsbetiae_contig16232:1069..1212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16232 1070..1212 -
1691683027.5197344-CDS-L-elsbetiae_contig16232:1069..12121691683027.5197344-CDS-L-elsbetiae_contig16232:1069..1212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16232 1070..1212 -
1622815670.4088023-CDS-L-elsbetiae_contig16232:1671..17921622815670.4088023-CDS-L-elsbetiae_contig16232:1671..1792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16232 1672..1792 -
1691683027.5279357-CDS-L-elsbetiae_contig16232:1671..17921691683027.5279357-CDS-L-elsbetiae_contig16232:1671..1792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16232 1672..1792 -
1622815670.4220736-CDS-L-elsbetiae_contig16232:2132..23721622815670.4220736-CDS-L-elsbetiae_contig16232:2132..2372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16232 2133..2372 -
1691683027.5358117-CDS-L-elsbetiae_contig16232:2132..23721691683027.5358117-CDS-L-elsbetiae_contig16232:2132..2372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16232 2133..2372 -
1622815670.4329498-CDS-L-elsbetiae_contig16232:3068..31701622815670.4329498-CDS-L-elsbetiae_contig16232:3068..3170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16232 3069..3170 -
1691683027.5438082-CDS-L-elsbetiae_contig16232:3068..31701691683027.5438082-CDS-L-elsbetiae_contig16232:3068..3170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16232 3069..3170 -
1622815670.4433646-CDS-L-elsbetiae_contig16232:3507..36211622815670.4433646-CDS-L-elsbetiae_contig16232:3507..3621Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16232 3508..3621 -
1691683027.5526333-CDS-L-elsbetiae_contig16232:3507..36211691683027.5526333-CDS-L-elsbetiae_contig16232:3507..3621Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16232 3508..3621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16232.4263.1

>prot_L-elsbetiae_contig16232.4263.1 ID=prot_L-elsbetiae_contig16232.4263.1|Name=mRNA_L-elsbetiae_contig16232.4263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=247bp
MGWNSRWDKWVVESDLMAAGPEALEMQKQLKEKKKKQKVSAAKRKEDQKA
KEQTKKEDQKIKRARVDVKKDTEDDTGVAEVKVAMPFTLKKQLVTDWENV
TQEPRRLVKLPRELTAADVMKQYMDSKANRSTPQQMARAQELMDGVRIYF
DKALPLILLYRQERTQYDITVQKHPGKSPSEIYGAEHLLRVFVRLPQLLA
QSALTASEVTQVQKLLGDFLRFMQKNHATFFVQEYEEEEPEEPQTA*
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mRNA from alignment at L-elsbetiae_contig16232:147..3675-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16232.4263.1 ID=mRNA_L-elsbetiae_contig16232.4263.1|Name=mRNA_L-elsbetiae_contig16232.4263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3529bp|location=Sequence derived from alignment at L-elsbetiae_contig16232:147..3675- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTCATCAAACTCAAGCCCTCGGGAGATCAGTTCACGTACTTCTTGCA TTACATGGGCTGGAACAGCCGGTGGGATAAGTGGGTGGTCGAGTCGGACC TGATGGCGGCGGGGCCTGAGGCGTTGGAGATGCAGAAGCAGCTCAAGGAG AAGAAGAAGAAGCAAAAGGTGAGCCTCGCAGAGGGCGCCTTGACACATTG TGTGCGCTCGGGTGCTTCGTCGCGTTTGTATTATAGTAGAGCGCGGCGCT ATGTAGCGCTCTTTCCCTGCTGGCCTGCTGATGTTGCGCAGCACGGGCGG TAACTTCGTTCTCGGAGATGGCACGGCAGGAGTTCATAGGAAGTATGGCC GCTGTGCTACCAAAGCGGGGCCTGCGAGAAAGGAACCGGTAGGCGTACCT GCTGTGGGCAGCACTCAGTGCAGGCATGGCCTTAAATCACTGCCGAAATG TCCTTCCCCCACTTAATTCATGCGTTTAAGCTCGGTGGGATGCCTTCCTG AACAGGTGTCAGCAGCGAAGCGGAAGGAGGACCAGAAGGCCAAGGAACAA ACCAAGAAGGAGGACCAGAAGATAAAGAGGGCTCGTGTAGACGTGAAGAA GGACACGGTGAGCCTGTGATATATATATGTACAATGTACGCTGAATACAC ACTCTTGCCCCTTCGTAACCGCCATGTTTTAAAAATAAACAATGAATCAA AGATGGAACCTACCCCGCACTGGAGCAAGGACTCGATATGGGGTTCAAAC GGTATTCCATACAGAGACGCAATATTTGGCGAAGCGAGCAGAAGAACAAC CTAAAGTATCAGAAAGAGTTCAACATCTCCCCTGCAAAGATTTAAGATTT GCGAGGTCGGCCAACAATTATTCAGGCAGGTAGAGCCCGCCGTGATGCCG TAATGTTGTCATCTACTTCAAAACAGGAACACATCGTATTGTTGAACTAA ATCAAAATGCTGGTTTAATATATGTGGGTTACTACTTTTGAGGAGAAAAT ACAGTATTAGTGGTAGTGATAAGATAATAGATTGGGAAGGGTGGTATGTA GTATGATGTGTTGGGAAATAGTGTGGGTATGATAACTTCCGTATGACATA TAAAACATGTCGAGAGGCAGTAAGTACACGGTATGTTTCCCTTCGAGCGG CAACGCGTTGCTCCCAACGTTGAGGCCAAAAGCGCGGTGTCTTTCTAAAT ACGCGGGTGGAACCGTGGTGGAACCGAGGGGCTATGCGCGCTGTCTTGTC ACCTACTTATGGAGCCGTCTTTTGGTTCAACAATGCCACCACCGGATGAG CAGGAAGACGACACCGGGGTGGCAGAGGTGAAGGTGGCGATGCCCTTCAC GCTCAAGAAGCAGCTGGTCACCGACTGGGAGAACGTGACCCAGGAGCCGC GGCGACTCGTCAAGCTGCCGCGCGAGCTGACCGCGGCGGACGTGATGAAG CAGTACATGGACAGCAAAGCCAACCGATCGACGCCGCAGCAGATGGCCCG CGCCCAGGAGCTGATGGACGGCGTGCGGATCTACTTTGACAAGGCGAGAC CAGGGGATAGGCTGAGTTTTCTGTCTGGGGGGTCTAGCAGTTAGTTTTGT TCTTGCCAGGTATGTTCTTGCCAGGTATGCCGTCGTGGACCCCACTGCCG AAAACGTTGCCGGCATCGTTTTGCAGCTTCGGGTGTGCAGGGAGGTTTAG CCGTGGAACCGGTTTTGCAGAGAAAGAAGTACGTCGTCGCGCACGGCTGT TTGAAATTGGCGTGGTTGCTCCCCCCCACCCCCCCCCCGCTGTTTCTCCC CAATTAAGGGTATCCTCTGCTGCTGTCGGCCCAAAGCTAACGATGGCACA ACTACCTACGCTACGTTCTTATCCCGGACGCAGGCGCTGCCGTTGATCCT GCTGTACCGGCAAGAGAGGACGCAGTACGATATCACGGTGCAAAAGCACC CCGGCAAGAGCCCGAGTGAGATCTACGGGGCAGAGCATCTCCTCCGAGTG TTCGGTGAGTTTTGCGCGTTGGTACTAACTGTATAGGGCGGATACAACAG AAAGACTGATTTTTGTTTTTAGGTGGGTGATAGCCTTGTGGTCTCGGAAT GTCGGCGCGCTCTCTCACCACGTGCGTCTTTTGGGTCCGGTTTGCCTCGA GAGCTGGCGGATCCTCACAGCCCTTGCCACGTCCTTGACGATTCGGTCGT CTACTATGTCTACGGGTTTGTGCTAACTTATGAGATAAAGTATAGAAACC GTGATAGGAGGGTCGGTGGTTGGGATTAAGGTTGGGGTTGTTTTCCTAGA TAGACTTAATTTCCGGCGTAGGCGGCCCTGACGATTTCGCCATGACGTGA GACGTAGCGACTCTCCTCGATTCTTCTTCCTCTGAGAATGCGCCCTGCTG CTGTGCGTGTGTGTGTGCTCCGTCTTCTTGTGACCCCACCGCGATTTTCC CCGCCCACAACAGTGCGGTTGCCACAACTGCTGGCGCAATCGGCGCTCAC AGCGTCGGAGGTGACCCAGGTGCAGAAGTTGCTGGGCGACTTCCTTCGCT TCATGCAGAAGAACCACGCCACTTTTTTCGTGCAGGAATACGAGGAGGAG GAGCCGGTGGGTTGGAATATGTACATACTTTTACATGCAACCGGTTTACC AAACGTTTCGTGTACAATATGTAGGTGGAGTACAAGCACCGCGTCGGTCC AACTGGACGAGGAATCCGGATCGTGCGAAAAACAGCAATTCATCCCACCA GGCTTGCAGCACCCTTCTTGCTCGATCGCACATGCGTCGACGCTGCACCA CTGACTGGGACACGGCCCGTTGTTTTTTCTTCTTCCCCTGTCGTTTCCGC AGGAAGAGCCGCAAACCGCGTAGCCACCGGTTCGCATGGAGCGGGCTTGC CTCACTTTCGGTATTGACCGTGTCGTTCTCTGCCGTACTTGGGATCACCG GACCGCTCCGTAGACCGCCGCCCCTTACAGAAAGGGGGAAGCGCTCCAAA GAGTCAGTCAGTGACTGCAGGGTTGCTGGGAATCCGCAACACGTACGTGG AGGTCGATGCGCACGCGGCCTTGCTTGCCCTTTGATCTCGGGGGCAGCAA ATACATTTTTTTTTATATACGTCGAACCACCACTACTGCCTGAACTACGA CTGTGTACACTTGTTTTTTGTTATTCGTTATCAGAGACTTATTTGTGGCT GCTTCCATGTATTTCGTGTCGACTTTGTAGTGCATATTGTAGGGGTATTA ATCGGTTGGGTTTTCCGATCTTTTAAACATCGGTTTACGGCGCAGCCGAT ATCCGATGTATCGGCGCCGATACATCGGCGAGCGCAGCGAGCCGCTCGCT GTGCGAGCCCCCCCGGCCCCCCCCGGCTGGCGAGGGGGCCCCGCTGGAGG CGCCGCCGGAGGCAAAAATTTTAGGGCCATTTGGCTTCATTTCCCTTCAA AATCTACCTTAGATGCATGAGTTCGGAGCTGGCTACGATACAACTTGGAG TAACCCAAACAAAATAGACAAAAAGAAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16232:147..3675-

>mRNA_L-elsbetiae_contig16232.4263.1 ID=mRNA_L-elsbetiae_contig16232.4263.1|Name=mRNA_L-elsbetiae_contig16232.4263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1482bp|location=Sequence derived from alignment at L-elsbetiae_contig16232:147..3675- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCTGGAACAGCCGGTGGGATAAGTGGGTGGTCGAGTCGGACCTGAT
GGCGGCGGGGCCTGAGGCGTTGGAGATGCAGAAGCAGCTCAAGGAGAAGA
AGAAGAAGCAAAAGATGGGCTGGAACAGCCGGTGGGATAAGTGGGTGGTC
GAGTCGGACCTGATGGCGGCGGGGCCTGAGGCGTTGGAGATGCAGAAGCA
GCTCAAGGAGAAGAAGAAGAAGCAAAAGGTGTCAGCAGCGAAGCGGAAGG
AGGACCAGAAGGCCAAGGAACAAACCAAGAAGGAGGACCAGAAGATAAAG
AGGGCTCGTGTAGACGTGAAGAAGGACACGGTGTCAGCAGCGAAGCGGAA
GGAGGACCAGAAGGCCAAGGAACAAACCAAGAAGGAGGACCAGAAGATAA
AGAGGGCTCGTGTAGACGTGAAGAAGGACACGGAAGACGACACCGGGGTG
GCAGAGGTGAAGGTGGCGATGCCCTTCACGCTCAAGAAGCAGCTGGTCAC
CGACTGGGAGAACGTGACCCAGGAGCCGCGGCGACTCGTCAAGCTGCCGC
GCGAGCTGACCGCGGCGGACGTGATGAAGCAGTACATGGACAGCAAAGCC
AACCGATCGACGCCGCAGCAGATGGCCCGCGCCCAGGAGCTGATGGACGG
CGTGCGGATCTACTTTGACAAGGAAGACGACACCGGGGTGGCAGAGGTGA
AGGTGGCGATGCCCTTCACGCTCAAGAAGCAGCTGGTCACCGACTGGGAG
AACGTGACCCAGGAGCCGCGGCGACTCGTCAAGCTGCCGCGCGAGCTGAC
CGCGGCGGACGTGATGAAGCAGTACATGGACAGCAAAGCCAACCGATCGA
CGCCGCAGCAGATGGCCCGCGCCCAGGAGCTGATGGACGGCGTGCGGATC
TACTTTGACAAGGCGCTGCCGTTGATCCTGCTGTACCGGCAAGAGAGGAC
GCAGTACGATATCACGGTGCAAAAGCACCCCGGCAAGAGCCCGAGTGAGA
TCTACGGGGCAGAGCATCTCCTCCGAGTGTTCGGCGCTGCCGTTGATCCT
GCTGTACCGGCAAGAGAGGACGCAGTACGATATCACGGTGCAAAAGCACC
CCGGCAAGAGCCCGAGTGAGATCTACGGGGCAGAGCATCTCCTCCGAGTG
TTCGTGCGGTTGCCACAACTGCTGGCGCAATCGGCGCTCACAGCGTCGGA
GGTGACCCAGGTGCAGAAGTTGCTGGGCGACTTCCTTCGCTTCATGCAGA
AGAACCACGCCACTTTTTTCGTGCAGGAATACGAGGAGGAGGAGCCGTGC
GGTTGCCACAACTGCTGGCGCAATCGGCGCTCACAGCGTCGGAGGTGACC
CAGGTGCAGAAGTTGCTGGGCGACTTCCTTCGCTTCATGCAGAAGAACCA
CGCCACTTTTTTCGTGCAGGAATACGAGGAGGAGGAGCCGGAAGAGCCGC
AAACCGCGTAGGAAGAGCCGCAAACCGCGTAG
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