mRNA_L-elsbetiae_contig16191.4250.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16191.4250.1
Unique NamemRNA_L-elsbetiae_contig16191.4250.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16191.4250.1 vs. uniprot
Match: D7FUP3_ECTSI (Proline--tRNA ligase, central part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP3_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 2.480e-66
Identity = 106/125 (84.80%), Postives = 111/125 (88.80%), Query Frame = 1
Query:    1 KCGGTSK-DGAASRRITPRAENFSQWYLDVIAASEMTENSPVKGCMVIRPWGMAIWESFKDDMDKASACSRIKTHDVDNAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLCKGPDGTLIPDP 372
            K G  SK D  ASRRITPRAENFSQWYLD+IAASEMTENSP KGCMVIRPWGMAIW++FKDDMDK     RIKT+DVDNAYFPLLIPQSFLTKEAEHV+GFAKECAVVTHHRLCK  DGTLIPDP
Sbjct:   80 KGGNASKADQQASRRITPRAENFSQWYLDIIAASEMTENSPTKGCMVIRPWGMAIWDAFKDDMDK-----RIKTYDVDNAYFPLLIPQSFLTKEAEHVDGFAKECAVVTHHRLCKSDDGTLIPDP 199          
BLAST of mRNA_L-elsbetiae_contig16191.4250.1 vs. uniprot
Match: A0A835Z2K2_9STRA (Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K2_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.120e-46
Identity = 77/117 (65.81%), Postives = 97/117 (82.91%), Query Frame = 1
Query:   25 GAASRRITPRAENFSQWYLDVIAASEMTENSPVKGCMVIRPWGMAIWESFKDDMDKASACSRIKTHDVDNAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLCKGPDGT-LIPDP 372
            G  S +ITPR +++SQWYLDVI+A+E+ ++SPVKGCMVIRPWGMA+W++ ++D+D     +RIK   V NAYFPL IP+SFL+KEAEHVEGFAKECAVVTHHRLC  P+G  L+PDP
Sbjct:  141 GQESDKITPRNQDYSQWYLDVISAAELVDSSPVKGCMVIRPWGMAVWDALRNDLD-----ARIKDKGVSNAYFPLFIPRSFLSKEAEHVEGFAKECAVVTHHRLCADPNGGGLVPDP 252          
BLAST of mRNA_L-elsbetiae_contig16191.4250.1 vs. uniprot
Match: A0A7R9ZD29_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZD29_9STRA)

HSP 1 Score: 155 bits (392), Expect = 7.260e-46
Identity = 73/118 (61.86%), Postives = 93/118 (78.81%), Query Frame = 1
Query:   22 DGAASRRITPRAENFSQWYLDVIAASEMTENSPVKGCMVIRPWGMAIWESFKDDMDKASACSRIKTHDVDNAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLCKGPDGT-LIPDP 372
            D A S  ITPR+EN+S+WY DVI A+ + E SPV+GCMVI+PWGM++W+  ++++D++     IK H  +NAYFPLLIP+SFL+KEAEHV+GFAKECAVVTHHRL    DGT LI DP
Sbjct:   45 DDAESDYITPRSENYSKWYTDVIRAAGLAELSPVRGCMVIKPWGMSLWDRVRNELDES-----IKEHGAENAYFPLLIPKSFLSKEAEHVDGFAKECAVVTHHRLTANEDGTDLIADP 157          
BLAST of mRNA_L-elsbetiae_contig16191.4250.1 vs. uniprot
Match: A0A7S2GJS1_9STRA (Proline--tRNA ligase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJS1_9STRA)

HSP 1 Score: 162 bits (409), Expect = 4.410e-45
Identity = 76/123 (61.79%), Postives = 91/123 (73.98%), Query Frame = 1
Query:    7 GGTSKDGAASRRITPRAENFSQWYLDVIAASEMTENSPVKGCMVIRPWGMAIWESFKDDMDKASACSRIKTHDVDNAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLCKGPDGT-LIPDP 372
            GG       S  ITPRA ++SQWY DV+  SE+ + SPV+GCMVIRPWGMA+W+  +DD+DK     RIK     NAYFPL+IP SFL+KEA+HV+GFAKECAV+THHRLC  PDG  LIPDP
Sbjct:    3 GGGKAQADLSDVITPRATDYSQWYQDVVYNSELVDQSPVRGCMVIRPWGMALWDLMRDDLDK-----RIKATGAQNAYFPLMIPTSFLSKEADHVDGFAKECAVITHHRLCANPDGAGLIPDP 120          
BLAST of mRNA_L-elsbetiae_contig16191.4250.1 vs. uniprot
Match: W7TTB8_9STRA (Proline--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTB8_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.390e-44
Identity = 76/116 (65.52%), Postives = 94/116 (81.03%), Query Frame = 1
Query:   31 ASRRITPRAENFSQWYLDVIAASEMTENSPVKGCMVIRPWGMAIWESFKDDMDKASACSRIKTHDVDNAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLCKGPDGT--LIPDP 372
            +S  ITPR EN+SQWYLDVIAA+++ + SPVKGCMVI+P+GMA+W++ +D++DK     RIK +   NAYFPL IP+SFL+KEAEHVEGFAKECAVVTHHRLC  P G   L+PDP
Sbjct:  184 SSLAITPRDENYSQWYLDVIAAADLVDQSPVKGCMVIKPYGMALWDALRDELDK-----RIKANGAQNAYFPLFIPRSFLSKEAEHVEGFAKECAVVTHHRLCVDPAGGPGLVPDP 294          
BLAST of mRNA_L-elsbetiae_contig16191.4250.1 vs. uniprot
Match: A0A7S3XX04_HETAK (Proline--tRNA ligase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX04_HETAK)

HSP 1 Score: 162 bits (410), Expect = 2.190e-44
Identity = 75/116 (64.66%), Postives = 93/116 (80.17%), Query Frame = 1
Query:   28 AASRRITPRAENFSQWYLDVIAASEMTENSPVKGCMVIRPWGMAIWESFKDDMDKASACSRIKTHDVDNAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLCKGPDGT-LIPDP 372
            A S  ITPR E++SQWY DV+AA+ + + SPV+GCMVI+PWGMAIW++ ++D+D+      IK  +V NAYFPL IP+SFL+KEAEHVEGFAKECAVVTHHRLC  P+G  LIPDP
Sbjct:  157 AKSDYITPREEDYSQWYQDVVAAAGLVDQSPVRGCMVIKPWGMAIWDALREDLDR-----EIKAKEVQNAYFPLFIPRSFLSKEAEHVEGFAKECAVVTHHRLCADPEGGGLIPDP 267          
BLAST of mRNA_L-elsbetiae_contig16191.4250.1 vs. uniprot
Match: A0A7S2SII9_9STRA (Proline--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SII9_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.540e-44
Identity = 73/111 (65.77%), Postives = 89/111 (80.18%), Query Frame = 1
Query:   43 ITPRAENFSQWYLDVIAASEMTENSPVKGCMVIRPWGMAIWESFKDDMDKASACSRIKTHDVDNAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLCKGPDGT-LIPDP 372
            ITPR E+++QWY DV+ AS++ + SPV+GCMVI+PWGMAIW++ ++D+D+     RI      NAYFPL IPQSFL+KEAEHVEGFAKECAVVTHHRLC  PDG  LIPDP
Sbjct:   90 ITPRQEDYAQWYQDVVYASDLVDQSPVRGCMVIKPWGMAIWDNLRNDLDR-----RISDSGASNAYFPLFIPQSFLSKEAEHVEGFAKECAVVTHHRLCASPDGNGLIPDP 195          
BLAST of mRNA_L-elsbetiae_contig16191.4250.1 vs. uniprot
Match: A0A7S0G925_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G925_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.640e-43
Identity = 68/111 (61.26%), Postives = 86/111 (77.48%), Query Frame = 1
Query:   43 ITPRAENFSQWYLDVIAASEMTENSPVKGCMVIRPWGMAIWESFKDDMDKASACSRIKTHDVDNAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLCKGPDGT-LIPDP 372
            I PR EN+S+WY D+I  +++ + SPV+GCMVI+PWGM++W+S + D+DK     R+  H   NAYFPLLIP+SFL+KEAEHVEGFAKECAVVTHHRL   P+G  LI DP
Sbjct:   33 ICPRKENYSKWYNDLIRVADLAQTSPVRGCMVIKPWGMSLWDSIRTDLDK-----RVIEHGASNAYFPLLIPKSFLSKEAEHVEGFAKECAVVTHHRLKADPEGGGLIADP 138          
BLAST of mRNA_L-elsbetiae_contig16191.4250.1 vs. uniprot
Match: L1JIE1_GUITC (Proline--tRNA ligase (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JIE1_GUITC)

HSP 1 Score: 156 bits (394), Expect = 5.530e-43
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1
Query:   43 ITPRAENFSQWYLDVIAASEMTENSPVKGCMVIRPWGMAIWESFKDDMDKASACSRIKTHDVDNAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLCKGPDGT-LIPDP 372
            ITPRA ++SQWY DVI A++M + SPVKGCMVIRPWGMA+W+  KD++++     RIK     NAYFPL IP SFL+KEAEHVEGFAKECAVVTHHRLC  P G  L+ DP
Sbjct:    7 ITPRATDYSQWYQDVIQAAQMVDQSPVKGCMVIRPWGMAVWDELKDELNR-----RIKETGTQNAYFPLFIPMSFLSKEAEHVEGFAKECAVVTHHRLCADPSGKGLMADP 112          
BLAST of mRNA_L-elsbetiae_contig16191.4250.1 vs. uniprot
Match: K0SCM4_THAOC (Proline--tRNA ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SCM4_THAOC)

HSP 1 Score: 157 bits (396), Expect = 1.930e-42
Identity = 73/119 (61.34%), Postives = 91/119 (76.47%), Query Frame = 1
Query:   22 DGAASRRITPRAENFSQWYLDVIAASEMTENSPVKGCMVIRPWGMAIWESFKDDMDKASACSRIKTHDVDNAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLCKGP--DGTLIPDP 372
            D   S  ITPRAEN+S+WY D+I   E+ E SPV+GCMVI+PWGM++W+  ++D+D     +RIK H  +NAYFPLLIP+SFL+KEAEHV+GFAKECAVVTHHRL   P  +G LI DP
Sbjct:  145 DDVESDYITPRAENYSKWYNDIIRVCELAETSPVRGCMVIKPWGMSLWDQVRNDLD-----ARIKDHGAENAYFPLLIPKSFLSKEAEHVDGFAKECAVVTHHRLTADPSGEGGLIADP 258          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16191.4250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP3_ECTSI2.480e-6684.80Proline--tRNA ligase, central part n=1 Tax=Ectocar... [more]
A0A835Z2K2_9STRA1.120e-4665.81Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
A0A7R9ZD29_9STRA7.260e-4661.86Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2GJS1_9STRA4.410e-4561.79Proline--tRNA ligase n=1 Tax=Dictyocha speculum Ta... [more]
W7TTB8_9STRA1.390e-4465.52Proline--tRNA ligase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A7S3XX04_HETAK2.190e-4464.66Proline--tRNA ligase n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2SII9_9STRA2.540e-4465.77Proline--tRNA ligase n=1 Tax=Rhizochromulina marin... [more]
A0A7S0G925_9STRA1.640e-4361.26Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
L1JIE1_GUITC5.530e-4365.77Proline--tRNA ligase (Fragment) n=1 Tax=Guillardia... [more]
K0SCM4_THAOC1.930e-4261.34Proline--tRNA ligase n=1 Tax=Thalassiosira oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16191contigL-elsbetiae_contig16191:525..2103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size375
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16191.4250.1prot_L-elsbetiae_contig16191.4250.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16191 527..2103 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.1206896-UTR-L-elsbetiae_contig16191:524..5261622815669.1206896-UTR-L-elsbetiae_contig16191:524..526Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16191 525..526 +
1691683026.6819553-UTR-L-elsbetiae_contig16191:524..5261691683026.6819553-UTR-L-elsbetiae_contig16191:524..526Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16191 525..526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.1345317-CDS-L-elsbetiae_contig16191:526..6501622815669.1345317-CDS-L-elsbetiae_contig16191:526..650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16191 527..650 +
1691683026.6934469-CDS-L-elsbetiae_contig16191:526..6501691683026.6934469-CDS-L-elsbetiae_contig16191:526..650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16191 527..650 +
1622815669.1451766-CDS-L-elsbetiae_contig16191:1190..12711622815669.1451766-CDS-L-elsbetiae_contig16191:1190..1271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16191 1191..1271 +
1691683026.7096543-CDS-L-elsbetiae_contig16191:1190..12711691683026.7096543-CDS-L-elsbetiae_contig16191:1190..1271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16191 1191..1271 +
1622815669.155225-CDS-L-elsbetiae_contig16191:1936..21031622815669.155225-CDS-L-elsbetiae_contig16191:1936..2103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16191 1937..2103 +
1691683026.7214859-CDS-L-elsbetiae_contig16191:1936..21031691683026.7214859-CDS-L-elsbetiae_contig16191:1936..2103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16191 1937..2103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16191.4250.1

>prot_L-elsbetiae_contig16191.4250.1 ID=prot_L-elsbetiae_contig16191.4250.1|Name=mRNA_L-elsbetiae_contig16191.4250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MWWYIEGRSRFPAHHAEGGELQPVVPGRDRGVGDDREQPRQGLHGHQTLG
HGHLGIVQGRHGQGECLLPHQDARRGQRVLPAADPPELPHQGGGARGGVR
QGVRRGDPPPPVQGARRDPHSRPR
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mRNA from alignment at L-elsbetiae_contig16191:525..2103+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16191.4250.1 ID=mRNA_L-elsbetiae_contig16191.4250.1|Name=mRNA_L-elsbetiae_contig16191.4250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1579bp|location=Sequence derived from alignment at L-elsbetiae_contig16191:525..2103+ (Laminarionema elsbetiae ELsaHSoW15)
AAATGTGGTGGTACATCGAAGGACGGAGCCGCTTCCCGGCGCATCACGCC GAGGGCGGAGAACTTCAGCCAGTGGTACCTGGACGTGATCGCGGCGTCGG AGATGACAGAGAACAGCCCCGTCAAGGTAATGGGAATGGTGTAGTTATAC CATGGTGCCCAGTCAAGGTACTGGAAATGGTCATGCCAAGGCGTCCCTTC AAGGTGATGGTAGTGGTAATGGTCATACCAGGGTGCGCCCGTCAAGGTGA TGGTAGTGGTCATGGTCAAATCAGGGTGCCCCGTCAAGGTGTTAGTAATG GTCATGGTCATACCAGGGTGTCCCGTCAAGGTAATGGTAATAGTCATGTC ATACCAAAGTGTCCCGTCAAGTAGCGGTGATGGTCATGATCATACCAGGG TGTTCCGTCAAGGTAATGGTAATGGTCATGTCATACCATAGTGTCCCGTC AAGGTAACGGTAGTGGTAGGGTTATACCAAGGGAGTGGACCAGTGCGGGG CCACGTGTGTGTATCTGGTATCTAGCGTGTGTTGCAGAGTGTCCACGATC TTCGCGTGTTTCCTGTCCAATGCCCGTTCTTCCTGTTCTTTGTTCTCGGT CATACGGGCGTGCGGTGGATCACATCCGATGTCTTCAACTCACATGTAAC GTGTCGCACCATCCAGGGCTGCATGGTCATCAGACCTTGGGGCATGGCCA TCTGGGAATCGTTCAAGGACGACATGGACAAGGCGAGTGCTTGCTCCGTG TGTCAGAGAGCGGCCATCCAGAGAGGGTGTGTAAGAAAAGCGCCAACCGT GATTTTCTTCAAAAAATGTAAAAAGCGCAGAAGGAGATTAAATCGCGCCA GTTACTTCTCTTTCAAGATTGAACACAAAAGTTCGAAGACCGGGGGGATA AGAGGATGAAAGCAGGCTTGGTCGTGGAAGACGACACGCCCAGTTTTCGG TACATACATACATAGCCTACGGCTTTTGTGTTTCATCAAAGATACGGGAT ATGAAGTATAGGAACTTGAAAAAGGGGTTTGGGGCTAGGGTTACTCAGGG CTGGGGCTACTGGACCCCTGTCTGTGTTTTAGATATGTAAGCTTCATTTG TTCGCGAAGGTGCCCCCCGGTTTTTCGGGGCCACCAACACCAACACCAAC ACCAACACCAATGTTCCTAAAGTCATAGCTCTGCCCGCCACCGCGCTGCT GTCCGTTGTTTCGACGTTCGTTTTGAGATTCTCCCTTCCTTGAAAATAAA TGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCAACACCACC CCTGCAATGAAATCGTGCCGACAACATACATACATACATACATACCTTTC ATTTGTTCTTGTACTTACCCCCCCGCGCCCCCTCCTCCTCCTCCTCCTCC TCAATCCCTCAGCGCATCAAGACGCACGACGTGGACAACGCGTACTTCCC GCTGCTGATCCCCCAGAGCTTCCTCACCAAGGAGGCGGAGCACGTGGAGG GGTTCGCCAAGGAGTGCGCCGTGGTGACCCACCACCGCCTGTGCAAGGGG CCCGACGGGACCCTCATTCCCGACCCCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16191:525..2103+

>mRNA_L-elsbetiae_contig16191.4250.1 ID=mRNA_L-elsbetiae_contig16191.4250.1|Name=mRNA_L-elsbetiae_contig16191.4250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig16191:525..2103+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGTGGTACATCGAAGGACGGAGCCGCTTCCCGGCGCATCACGCCGA
GGGCGGAGAACTTCAGCCAGTGGTACCTGGACGTGATCGCGGCGTCGGAG
ATGACAGAGAACAGCCCCGTCAAGATGTGGTGGTACATCGAAGGACGGAG
CCGCTTCCCGGCGCATCACGCCGAGGGCGGAGAACTTCAGCCAGTGGTAC
CTGGACGTGATCGCGGCGTCGGAGATGACAGAGAACAGCCCCGTCAAGGG
CTGCATGGTCATCAGACCTTGGGGCATGGCCATCTGGGAATCGTTCAAGG
ACGACATGGACAAGGCGAGTGCTTGCTCCGGCTGCATGGTCATCAGACCT
TGGGGCATGGCCATCTGGGAATCGTTCAAGGACGACATGGACAAGGCGAG
TGCTTGCTCCCGCATCAAGACGCACGACGTGGACAACGCGTACTTCCCGC
TGCTGATCCCCCAGAGCTTCCTCACCAAGGAGGCGGAGCACGTGGAGGGG
TTCGCCAAGGAGTGCGCCGTGGTGACCCACCACCGCCTGTGCAAGGGGCC
CGACGGGACCCTCATTCCCGACCCCGACGCATCAAGACGCACGACGTGGA
CAACGCGTACTTCCCGCTGCTGATCCCCCAGAGCTTCCTCACCAAGGAGG
CGGAGCACGTGGAGGGGTTCGCCAAGGAGTGCGCCGTGGTGACCCACCAC
CGCCTGTGCAAGGGGCCCGACGGGACCCTCATTCCCGACCCCGA
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