mRNA_L-elsbetiae_contig16151.4230.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16151.4230.1
Unique NamemRNA_L-elsbetiae_contig16151.4230.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16151.4230.1 vs. uniprot
Match: A0A4Y5T7V9_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7V9_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 3.690e-65
Identity = 97/120 (80.83%), Postives = 111/120 (92.50%), Query Frame = 1
Query:    1 MYYFNEYYAILIFSGISIILAIIIFGASYALAIVKSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWALSLSQLPSLAYWSILDFLFELVIGFIYAWKIGSLDWE 360
            M+Y +EYY+ILIF  IS++LA IIFGASY LA+  SDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVF+FPWA+SLSQ+PS+ YWS++DFLFELV+GFIYAWKIGSL+W 
Sbjct:    1 MFYLHEYYSILIFLVISVLLAFIIFGASYLLALSNSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFVFPWAISLSQMPSIGYWSMMDFLFELVVGFIYAWKIGSLEWS 120          
BLAST of mRNA_L-elsbetiae_contig16151.4230.1 vs. uniprot
Match: A0A0U1XDC4_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=66 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U1XDC4_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.500e-64
Identity = 97/120 (80.83%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    1 MYYFNEYYAILIFSGISIILAIIIFGASYALAIVKSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWALSLSQLPSLAYWSILDFLFELVIGFIYAWKIGSLDWE 360
            M++  EYY  LIF G S+ LA +IFGASY LAI  SDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+FLFPWA+SLSQLPS+ YWS++DFLFELV+GFIYAW+IGSLDWE
Sbjct:    1 MFFLKEYYPALIFLGFSLFLAALIFGASYILAISDSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAVSLSQLPSIGYWSMMDFLFELVVGFIYAWQIGSLDWE 120          
BLAST of mRNA_L-elsbetiae_contig16151.4230.1 vs. uniprot
Match: Q2TU99_DICDH (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TU99_DICDH)

HSP 1 Score: 196 bits (499), Expect = 4.870e-63
Identity = 94/119 (78.99%), Postives = 109/119 (91.60%), Query Frame = 1
Query:    1 MYYFNEYYAILIFSGISIILAIIIFGASYALAIVKSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWALSLSQLPSLAYWSILDFLFELVIGFIYAWKIGSLDW 357
            M+Y +EYY +L+F  ISI+LA +IFG SY LA  K+DSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVF+FPWA+SLSQLPS+ YWS++DFLFEL++GFIYAWKIGSL+W
Sbjct:    1 MFYLHEYYPVLLFFLISILLAFLIFGLSYILAFSKADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFVFPWAVSLSQLPSVGYWSMMDFLFELIVGFIYAWKIGSLEW 119          
BLAST of mRNA_L-elsbetiae_contig16151.4230.1 vs. uniprot
Match: E6ZET4_ECTSI (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZET4_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 7.140e-63
Identity = 93/120 (77.50%), Postives = 109/120 (90.83%), Query Frame = 1
Query:    1 MYYFNEYYAILIFSGISIILAIIIFGASYALAIVKSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWALSLSQLPSLAYWSILDFLFELVIGFIYAWKIGSLDWE 360
            M++  EYY +LIF G S+ LA +IFGAS+ LA+  +D+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+FLFPW++SLSQLPS+ YWS+LDFLFELV+GFIYAW+IGSLDWE
Sbjct:    1 MFFLKEYYPVLIFLGFSLALAGVIFGASFILAVSDADTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLPSIGYWSMLDFLFELVVGFIYAWQIGSLDWE 120          
BLAST of mRNA_L-elsbetiae_contig16151.4230.1 vs. uniprot
Match: Q94YZ1_PYLLI (NADH-ubiquinone oxidoreductase chain 3 n=3 Tax=Ectocarpales TaxID=2877 RepID=Q94YZ1_PYLLI)

HSP 1 Score: 195 bits (496), Expect = 1.440e-62
Identity = 95/120 (79.17%), Postives = 106/120 (88.33%), Query Frame = 1
Query:    1 MYYFNEYYAILIFSGISIILAIIIFGASYALAIVKSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWALSLSQLPSLAYWSILDFLFELVIGFIYAWKIGSLDWE 360
            M+   EYY  LIF   S +LA IIFGASY LA+  +DSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+FLFPWA+SLSQLPS+ YWS++DFLFELV+GFIYAW+IGSLDWE
Sbjct:    1 MFLLKEYYPALIFLVFSFVLAAIIFGASYILAVSSADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAVSLSQLPSIGYWSMMDFLFELVVGFIYAWQIGSLDWE 120          
BLAST of mRNA_L-elsbetiae_contig16151.4230.1 vs. uniprot
Match: A0A8F0K0X7_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0K0X7_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 4.670e-61
Identity = 91/119 (76.47%), Postives = 107/119 (89.92%), Query Frame = 1
Query:    1 MYYFNEYYAILIFSGISIILAIIIFGASYALAIVKSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWALSLSQLPSLAYWSILDFLFELVIGFIYAWKIGSLDW 357
            M+ F+EYY +L+F  +  ILA+IIFGASY L   K+D+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+FLFPWA++LSQLPSL YWS++DFL ELV+GFIYAW+IGSL+W
Sbjct:    1 MFCFHEYYPVLLFLVVGFILAVIIFGASYFLVFSKADNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAITLSQLPSLGYWSMMDFLLELVVGFIYAWQIGSLEW 119          
BLAST of mRNA_L-elsbetiae_contig16151.4230.1 vs. uniprot
Match: A0A0U1WNN7_SARFS (NADH-ubiquinone oxidoreductase chain 3 n=22 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1WNN7_SARFS)

HSP 1 Score: 191 bits (485), Expect = 6.840e-61
Identity = 92/120 (76.67%), Postives = 106/120 (88.33%), Query Frame = 1
Query:    1 MYYFNEYYAILIFSGISIILAIIIFGASYALAIVKSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWALSLSQLPSLAYWSILDFLFELVIGFIYAWKIGSLDWE 360
            M++  EY   LI+   S+ILA +IFGASY LA+ +SD+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVF+FPWA SLSQLP + YWS++DFLFELV+GFIYAW+IGSLDWE
Sbjct:    1 MFFLREYSPALIYLCFSLILASVIFGASYTLALAESDNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFIFPWAASLSQLPPVGYWSVIDFLFELVVGFIYAWQIGSLDWE 120          
BLAST of mRNA_L-elsbetiae_contig16151.4230.1 vs. uniprot
Match: A0A8E8U4L6_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8U4L6_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 3.110e-57
Identity = 85/115 (73.91%), Postives = 103/115 (89.57%), Query Frame = 1
Query:   16 EYYAILIFSGISIILAIIIFGASYALAIVKSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWALSLSQLPSLAYWSILDFLFELVIGFIYAWKIGSLDWE 360
            EYY IL+F   S+ L+++IFGASY  +I + D+EK+SSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPW ++LS+LP++ YWS++DF+ ELVIGFIYAW+IGSLDWE
Sbjct:    6 EYYPILLFITFSLFLSLLIFGASYTFSIAEPDNEKVSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWVVTLSELPAVGYWSMVDFIIELVIGFIYAWQIGSLDWE 120          
BLAST of mRNA_L-elsbetiae_contig16151.4230.1 vs. uniprot
Match: A0A7S6UA31_9STRA (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA31_9STRA)

HSP 1 Score: 176 bits (447), Expect = 4.660e-55
Identity = 87/117 (74.36%), Postives = 102/117 (87.18%), Query Frame = 1
Query:   13 NEYYAILIFSGISIILAIIIFGASYALAIVKSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWALSLSQLP-SLAYWSILDFLFELVIGFIYAWKIGSLDWE 360
             EYY IL+F+ +SI LA +IFGASYALA+ K D+EKLSSYECGFDPYEDARNAFDVRFYLVAILFL+FD+E VFLFPWA+ L Q   SL  WS++DFLFEL++GF+YAW+IGSLDWE
Sbjct:    7 QEYYPILVFTFLSIGLAGLIFGASYALALAKPDTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLIFDLEAVFLFPWAVGLGQQSTSLGLWSMIDFLFELLVGFVYAWQIGSLDWE 123          
BLAST of mRNA_L-elsbetiae_contig16151.4230.1 vs. uniprot
Match: A0A0K2RWM0_9STRA (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Triparma laevis TaxID=1534972 RepID=A0A0K2RWM0_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.570e-52
Identity = 78/116 (67.24%), Postives = 99/116 (85.34%), Query Frame = 1
Query:   13 NEYYAILIFSGISIILAIIIFGASYALAIVKSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWALSLSQLPSLAYWSILDFLFELVIGFIYAWKIGSLDWE 360
             EYY IL+F  ++IIL+ +I GASY LA+   D+EKLS+YECGFDPYEDAR+ FDVRFYLVAILF++FDIE +FLFPWA+SL Q+ SL +WS++DF+ EL +GFIYAWKIG+L+WE
Sbjct:    8 QEYYPILLFLSVAIILSAVILGASYLLAVQNPDTEKLSAYECGFDPYEDARHTFDVRFYLVAILFIIFDIEAMFLFPWAVSLDQIGSLGFWSMVDFILELGVGFIYAWKIGALEWE 123          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16151.4230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y5T7V9_9PHAE3.690e-6580.83NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dic... [more]
A0A0U1XDC4_9PHAE1.500e-6480.83NADH-ubiquinone oxidoreductase chain 3 n=66 Tax=Ph... [more]
Q2TU99_DICDH4.870e-6378.99NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dic... [more]
E6ZET4_ECTSI7.140e-6377.50NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Ect... [more]
Q94YZ1_PYLLI1.440e-6279.17NADH-ubiquinone oxidoreductase chain 3 n=3 Tax=Ect... [more]
A0A8F0K0X7_9PHAE4.670e-6176.47NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Pro... [more]
A0A0U1WNN7_SARFS6.840e-6176.67NADH-ubiquinone oxidoreductase chain 3 n=22 Tax=Sa... [more]
A0A8E8U4L6_9PHAE3.110e-5773.91NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Pha... [more]
A0A7S6UA31_9STRA4.660e-5574.36NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Sch... [more]
A0A0K2RWM0_9STRA2.570e-5267.24NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Tri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16151contigL-elsbetiae_contig16151:654..1016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score137.9
Seed ortholog evalue3.2e-30
Seed eggNOG ortholog1089551.KE386572_gene3434
Preferred namenuoA
KEGG rclassRC00061
KEGG koko:K00330
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0044464,GO:0050136,GO:0055114,GO:0071944,GO:0098796,GO:1902494
EggNOG free text desc.NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
EggNOG OGs1RGUT@1224,2U72Q@28211,4BQBD@82117,COG0838@1,COG0838@2
EC1.6.5.3
COG Functional cat.C
Best tax levelunclassified Alphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size363
Cds size363
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.5931513-CDS-L-elsbetiae_contig16151:653..10161622815667.5931513-CDS-L-elsbetiae_contig16151:653..1016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16151 654..1016 -
1691683025.6816857-CDS-L-elsbetiae_contig16151:653..10161691683025.6816857-CDS-L-elsbetiae_contig16151:653..1016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16151 654..1016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16151.4230.1prot_L-elsbetiae_contig16151.4230.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16151 654..1016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16151.4230.1

>prot_L-elsbetiae_contig16151.4230.1 ID=prot_L-elsbetiae_contig16151.4230.1|Name=mRNA_L-elsbetiae_contig16151.4230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MYYFNEYYAILIFSGISIILAIIIFGASYALAIVKSDSEKLSSYECGFDP
YEDARNAFDVRFYLVAILFLLFDIETVFLFPWALSLSQLPSLAYWSILDF
LFELVIGFIYAWKIGSLDWE*
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mRNA from alignment at L-elsbetiae_contig16151:654..1016-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16151.4230.1 ID=mRNA_L-elsbetiae_contig16151.4230.1|Name=mRNA_L-elsbetiae_contig16151.4230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=363bp|location=Sequence derived from alignment at L-elsbetiae_contig16151:654..1016- (Laminarionema elsbetiae ELsaHSoW15)
ATGTATTATTTTAATGAATATTATGCTATTTTAATTTTTTCTGGTATTAG TATTATTCTTGCTATTATTATTTTTGGAGCTTCTTATGCTTTAGCTATTG TTAAGTCTGATAGTGAAAAATTATCTTCATATGAATGTGGTTTTGACCCT TATGAAGATGCTAGGAATGCTTTTGATGTTCGTTTTTATTTAGTAGCTAT TTTATTTTTACTTTTTGATATTGAAACTGTGTTTTTATTTCCTTGGGCCC TTTCTCTATCACAGCTACCCTCTTTGGCTTATTGGTCTATATTAGACTTT TTATTTGAATTAGTTATTGGTTTTATTTATGCTTGGAAAATTGGTAGTTT AGATTGGGAATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16151:654..1016-

>mRNA_L-elsbetiae_contig16151.4230.1 ID=mRNA_L-elsbetiae_contig16151.4230.1|Name=mRNA_L-elsbetiae_contig16151.4230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig16151:654..1016- (Laminarionema elsbetiae ELsaHSoW15)
ATGTATTATTTTAATGAATATTATGCTATTTTAATTTTTTCTGGTATTAG
TATTATTCTTGCTATTATTATTTTTGGAGCTTCTTATGCTTTAGCTATTG
TTAAGTCTGATAGTGAAAAATTATCTTCATATGAATGTGGTTTTGACCCT
TATGAAGATGCTAGGAATGCTTTTGATGTTCGTTTTTATTTAGTAGCTAT
TTTATTTTTACTTTTTGATATTGAAACTGTGTTTTTATTTCCTTGGGCCC
TTTCTCTATCACAGCTACCCTCTTTGGCTTATTGGTCTATATTAGACTTT
TTATTTGAATTAGTTATTGGTTTTATTTATGCTTGGAAAATTGGTAGTTT
AGATTGGGAATGAATGTATTATTTTAATGAATATTATGCTATTTTAATTT
TTTCTGGTATTAGTATTATTCTTGCTATTATTATTTTTGGAGCTTCTTAT
GCTTTAGCTATTGTTAAGTCTGATAGTGAAAAATTATCTTCATATGAATG
TGGTTTTGACCCTTATGAAGATGCTAGGAATGCTTTTGATGTTCGTTTTT
ATTTAGTAGCTATTTTATTTTTACTTTTTGATATTGAAACTGTGTTTTTA
TTTCCTTGGGCCCTTTCTCTATCACAGCTACCCTCTTTGGCTTATTGGTC
TATATTAGACTTTTTATTTGAATTAGTTATTGGTTTTATTTATGCTTGGA
AAATTGGTAGTTTAGATTGGGAATGA
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