mRNA_L-elsbetiae_contig16109.4201.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16109.4201.1
Unique NamemRNA_L-elsbetiae_contig16109.4201.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 6.580e-14
Identity = 80/233 (34.33%), Postives = 104/233 (44.64%), Query Frame = 1
Query:    1 REKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVPTAAA--------DTRESSFPPDADPRGDVCFGNDRDSDSSVDSGDAGDIESDADADVDEDPIEPDGYHRRPPDD--------TDRQLRSKG---RLPSSSTSDLSARQRRALRQLA--------------------FSVPSNATAPLVPPASIPTPNTFKQAMASPFRSKWKGAMEKELQSLK 582
            + KL +RAW G LVGYS +S AYRIYNP T+R+V SRNVTFIE  DA +P            D  E SF  D D  G+                  G+++       D    E D Y               T   LRS G   R   +  +  + RQ+  LR+L+                       PS A  P+ PPASIP P T+++AM S    +WK AM+KE++SLK
Sbjct:  710 KSKLANRAWPGILVGYSPNSNAYRIYNPHTKRIVPSRNVTFIEPMDAAMPPVIPTIKKLRDYDGDELSFSSDVDIPGNE-----------------GEVK-------DNSKYEEDYYEEXXXXXXXXXXGTPTRMHLRSSGSSGRNTENQQTTNNKRQQAELRRLSPWNKLATFVNQYQDQDQDIRIKTPS-AGEPVRPPASIPVPTTYQEAMRSMDADQWKAAMDKEMKSLK 917          
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 7.930e-14
Identity = 65/194 (33.51%), Postives = 89/194 (45.88%), Query Frame = 1
Query:    1 REKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVPTAAADTRESSFPPDADPRGDVCFGNDRDSDSSVDSGDAGDIESDADADVDEDPIEPDGYHRRPPDDTDRQLRSKGRLPSSSTSDLSARQRRALRQLAFSVPSNATAPLVPPASIPTPNTFKQAMASPFRSKWKGAMEKELQSLK 582
            + KL +RAW G L+GYS DSRAYR++NP T+R+V SRNVTFIE  DA +P                                                    P+ P     R  +DT+ +L        S +SD++  Q      +    PS A  P+ PPA IP P T+++AM S    +WK AM+KE++SLK
Sbjct:  228 KSKLANRAWPGILIGYSPDSRAYRVFNPRTKRIVHSRNVTFIEPMDAAMP----------------------------------------------------PVIPTPAELR--NDTENEL--------SVSSDVNQDQ-----YIRIKTPS-AGEPVRPPACIPIPTTYQEAMRSMDADQWKAAMDKEIRSLK 353          
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5KFB1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB1_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.770e-10
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 REKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVPTA 156
            + KL +RAW G L+GYS DSRAYR++NP T+R+V SRNVTFIE  DA +P A
Sbjct:  223 KSKLVNRAWPGILIGYSPDSRAYRVFNPHTKRIVHSRNVTFIEPMDAAMPPA 274          
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5JRS9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS9_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.510e-10
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    4 EKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVPTAAAD 165
            +KL DR ++G+L G+S+DS+ YRIYNPAT  VVESRNVTFIETP   +P +  D
Sbjct: 1167 KKLSDRTFEGKLCGFSRDSKTYRIYNPATGNVVESRNVTFIETPAYSMPPSVLD 1220          
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.600e-10
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    4 EKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 144
            +KL  RAW+GRLVGYS DS++YRIYN  TRRV ESRNV FIET  AP
Sbjct:  816 KKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPAP 862          
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.800e-10
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    4 EKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 144
            +KL  RAW+GRLVGYS DS++YRIYN  TRRV ESRNV FIET  AP
Sbjct: 1045 KKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPAP 1091          
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 6.260e-10
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    4 EKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 144
            +KL  RAW+GRLVGYS DS++YRIYN  TRRV ESRNV FIET  AP
Sbjct:  722 KKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETNPAP 768          
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.060e-9
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    4 EKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 144
            +KL  RAW+GRLVGYS DS++YRIYN  TRRV ESRNV FIET  +P
Sbjct:   72 KKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPSP 118          
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.020e-9
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    7 KLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETP 135
            KL+ RAW+GRLVGYS DS++YRIYN  TRRV  SRNV FIETP
Sbjct:  287 KLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRNVVFIETP 329          
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5KYQ2_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ2_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.730e-9
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    4 EKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 144
            +K   RAW+GRLVGYS DS++YRIYN  TRRV ESRNV FIET  AP
Sbjct:  641 KKSDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPAP 687          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE6.580e-1434.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE7.930e-1433.51Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KFB1_9PHAE1.770e-1063.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRS9_9PHAE3.510e-1061.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJN3_9PHAE4.600e-1072.34Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE4.800e-1072.34Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE6.260e-1072.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMG0_9PHAE1.060e-970.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE2.020e-974.42Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KYQ2_9PHAE2.730e-970.21CCHC-type domain-containing protein (Fragment) n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16109contigL-elsbetiae_contig16109:3320..3902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size583
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.4297874-CDS-L-elsbetiae_contig16109:3319..39011622815665.4297874-CDS-L-elsbetiae_contig16109:3319..3901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16109 3320..3901 +
1691683024.3922784-CDS-L-elsbetiae_contig16109:3319..39011691683024.3922784-CDS-L-elsbetiae_contig16109:3319..3901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16109 3320..3901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16109.4201.1prot_L-elsbetiae_contig16109.4201.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16109 3320..3901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16109.4201.1

>prot_L-elsbetiae_contig16109.4201.1 ID=prot_L-elsbetiae_contig16109.4201.1|Name=mRNA_L-elsbetiae_contig16109.4201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp
REKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVP
TAAADTRESSFPPDADPRGDVCFGNDRDSDSSVDSGDAGDIESDADADVD
EDPIEPDGYHRRPPDDTDRQLRSKGRLPSSSTSDLSARQRRALRQLAFSV
PSNATAPLVPPASIPTPNTFKQAMASPFRSKWKGAMEKELQSLK
back to top

mRNA from alignment at L-elsbetiae_contig16109:3320..3902+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16109.4201.1 ID=mRNA_L-elsbetiae_contig16109.4201.1|Name=mRNA_L-elsbetiae_contig16109.4201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=583bp|location=Sequence derived from alignment at L-elsbetiae_contig16109:3320..3902+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGAGAAGCTGCAGGACCGCGCCTGGCAAGGGCGCTTGGTTGGCTACAG CAAGGACAGCCGGGCCTACCGCATCTACAACCCCGCGACGCGTCGGGTGG TGGAGTCCCGCAACGTCACCTTCATTGAAACCCCGGATGCTCCCGTTCCC ACGGCCGCCGCCGACACTCGTGAATCCTCTTTCCCTCCGGACGCTGATCC AAGGGGGGATGTGTGTTTCGGCAACGACAGAGACAGCGACAGCAGCGTAG ACAGCGGCGACGCCGGCGACATCGAGAGCGACGCCGATGCCGACGTTGAT GAAGATCCCATCGAGCCGGACGGATATCATCGCCGCCCGCCGGACGACAC GGACCGCCAACTTCGCTCGAAGGGACGGCTTCCATCTTCTTCCACCTCCG ACCTCTCTGCAAGGCAACGCAGGGCACTGCGGCAGCTGGCGTTCTCGGTC CCGTCCAACGCCACCGCGCCGCTCGTACCGCCGGCGTCGATCCCGACGCC CAACACCTTCAAGCAAGCCATGGCGTCCCCGTTCCGCTCGAAATGGAAGG GAGCCATGGAAAAGGAACTTCAAAGTCTCAAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16109:3320..3902+

>mRNA_L-elsbetiae_contig16109.4201.1 ID=mRNA_L-elsbetiae_contig16109.4201.1|Name=mRNA_L-elsbetiae_contig16109.4201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig16109:3320..3902+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGAGAAGCTGCAGGACCGCGCCTGGCAAGGGCGCTTGGTTGGCTACAG
CAAGGACAGCCGGGCCTACCGCATCTACAACCCCGCGACGCGTCGGGTGG
TGGAGTCCCGCAACGTCACCTTCATTGAAACCCCGGATGCTCCCGTTCCC
ACGGCCGCCGCCGACACTCGTGAATCCTCTTTCCCTCCGGACGCTGATCC
AAGGGGGGATGTGTGTTTCGGCAACGACAGAGACAGCGACAGCAGCGTAG
ACAGCGGCGACGCCGGCGACATCGAGAGCGACGCCGATGCCGACGTTGAT
GAAGATCCCATCGAGCCGGACGGATATCATCGCCGCCCGCCGGACGACAC
GGACCGCCAACTTCGCTCGAAGGGACGGCTTCCATCTTCTTCCACCTCCG
ACCTCTCTGCAAGGCAACGCAGGGCACTGCGGCAGCTGGCGTTCTCGGTC
CCGTCCAACGCCACCGCGCCGCTCGTACCGCCGGCGTCGATCCCGACGCC
CAACACCTTCAAGCAAGCCATGGCGTCCCCGTTCCGCTCGAAATGGAAGG
GAGCCATGGAAAAGGAACTTCAAAGTCTCAAGCGGGAGAAGCTGCAGGAC
CGCGCCTGGCAAGGGCGCTTGGTTGGCTACAGCAAGGACAGCCGGGCCTA
CCGCATCTACAACCCCGCGACGCGTCGGGTGGTGGAGTCCCGCAACGTCA
CCTTCATTGAAACCCCGGATGCTCCCGTTCCCACGGCCGCCGCCGACACT
CGTGAATCCTCTTTCCCTCCGGACGCTGATCCAAGGGGGGATGTGTGTTT
CGGCAACGACAGAGACAGCGACAGCAGCGTAGACAGCGGCGACGCCGGCG
ACATCGAGAGCGACGCCGATGCCGACGTTGATGAAGATCCCATCGAGCCG
GACGGATATCATCGCCGCCCGCCGGACGACACGGACCGCCAACTTCGCTC
GAAGGGACGGCTTCCATCTTCTTCCACCTCCGACCTCTCTGCAAGGCAAC
GCAGGGCACTGCGGCAGCTGGCGTTCTCGGTCCCGTCCAACGCCACCGCG
CCGCTCGTACCGCCGGCGTCGATCCCGACGCCCAACACCTTCAAGCAAGC
CATGGCGTCCCCGTTCCGCTCGAAATGGAAGGGAGCCATGGAAAAGGAAC
TTCAAAGTCTCAAG
back to top