mRNA_L-elsbetiae_contig16109.4201.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 6.580e-14 Identity = 80/233 (34.33%), Postives = 104/233 (44.64%), Query Frame = 1 Query: 1 REKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVPTAAA--------DTRESSFPPDADPRGDVCFGNDRDSDSSVDSGDAGDIESDADADVDEDPIEPDGYHRRPPDD--------TDRQLRSKG---RLPSSSTSDLSARQRRALRQLA--------------------FSVPSNATAPLVPPASIPTPNTFKQAMASPFRSKWKGAMEKELQSLK 582 + KL +RAW G LVGYS +S AYRIYNP T+R+V SRNVTFIE DA +P D E SF D D G+ G+++ D E D Y T LRS G R + + + RQ+ LR+L+ PS A P+ PPASIP P T+++AM S +WK AM+KE++SLK Sbjct: 710 KSKLANRAWPGILVGYSPNSNAYRIYNPHTKRIVPSRNVTFIEPMDAAMPPVIPTIKKLRDYDGDELSFSSDVDIPGNE-----------------GEVK-------DNSKYEEDYYEEXXXXXXXXXXGTPTRMHLRSSGSSGRNTENQQTTNNKRQQAELRRLSPWNKLATFVNQYQDQDQDIRIKTPS-AGEPVRPPASIPVPTTYQEAMRSMDADQWKAAMDKEMKSLK 917
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 7.930e-14 Identity = 65/194 (33.51%), Postives = 89/194 (45.88%), Query Frame = 1 Query: 1 REKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVPTAAADTRESSFPPDADPRGDVCFGNDRDSDSSVDSGDAGDIESDADADVDEDPIEPDGYHRRPPDDTDRQLRSKGRLPSSSTSDLSARQRRALRQLAFSVPSNATAPLVPPASIPTPNTFKQAMASPFRSKWKGAMEKELQSLK 582 + KL +RAW G L+GYS DSRAYR++NP T+R+V SRNVTFIE DA +P P+ P R +DT+ +L S +SD++ Q + PS A P+ PPA IP P T+++AM S +WK AM+KE++SLK Sbjct: 228 KSKLANRAWPGILIGYSPDSRAYRVFNPRTKRIVHSRNVTFIEPMDAAMP----------------------------------------------------PVIPTPAELR--NDTENEL--------SVSSDVNQDQ-----YIRIKTPS-AGEPVRPPACIPIPTTYQEAMRSMDADQWKAAMDKEIRSLK 353
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5KFB1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB1_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 1.770e-10 Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1 Query: 1 REKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVPTA 156 + KL +RAW G L+GYS DSRAYR++NP T+R+V SRNVTFIE DA +P A Sbjct: 223 KSKLVNRAWPGILIGYSPDSRAYRVFNPHTKRIVHSRNVTFIEPMDAAMPPA 274
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5JRS9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS9_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 3.510e-10 Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1 Query: 4 EKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVPTAAAD 165 +KL DR ++G+L G+S+DS+ YRIYNPAT VVESRNVTFIETP +P + D Sbjct: 1167 KKLSDRTFEGKLCGFSRDSKTYRIYNPATGNVVESRNVTFIETPAYSMPPSVLD 1220
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 4.600e-10 Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1 Query: 4 EKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 144 +KL RAW+GRLVGYS DS++YRIYN TRRV ESRNV FIET AP Sbjct: 816 KKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPAP 862
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 4.800e-10 Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1 Query: 4 EKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 144 +KL RAW+GRLVGYS DS++YRIYN TRRV ESRNV FIET AP Sbjct: 1045 KKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPAP 1091
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 6.260e-10 Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1 Query: 4 EKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 144 +KL RAW+GRLVGYS DS++YRIYN TRRV ESRNV FIET AP Sbjct: 722 KKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETNPAP 768
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.060e-9 Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1 Query: 4 EKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 144 +KL RAW+GRLVGYS DS++YRIYN TRRV ESRNV FIET +P Sbjct: 72 KKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPSP 118
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 2.020e-9 Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1 Query: 7 KLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETP 135 KL+ RAW+GRLVGYS DS++YRIYN TRRV SRNV FIETP Sbjct: 287 KLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRNVVFIETP 329
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Match: A0A6H5KYQ2_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ2_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 2.730e-9 Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 1 Query: 4 EKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 144 +K RAW+GRLVGYS DS++YRIYN TRRV ESRNV FIET AP Sbjct: 641 KKSDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPAP 687 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16109.4201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig16109.4201.1 >prot_L-elsbetiae_contig16109.4201.1 ID=prot_L-elsbetiae_contig16109.4201.1|Name=mRNA_L-elsbetiae_contig16109.4201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp REKLQDRAWQGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVPback to top mRNA from alignment at L-elsbetiae_contig16109:3320..3902+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig16109.4201.1 ID=mRNA_L-elsbetiae_contig16109.4201.1|Name=mRNA_L-elsbetiae_contig16109.4201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=583bp|location=Sequence derived from alignment at L-elsbetiae_contig16109:3320..3902+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig16109:3320..3902+ >mRNA_L-elsbetiae_contig16109.4201.1 ID=mRNA_L-elsbetiae_contig16109.4201.1|Name=mRNA_L-elsbetiae_contig16109.4201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig16109:3320..3902+ (Laminarionema elsbetiae ELsaHSoW15)back to top |