mRNA_L-elsbetiae_contig1604.4163.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1604.4163.1
Unique NamemRNA_L-elsbetiae_contig1604.4163.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1604.4163.1 vs. uniprot
Match: A0A2D4BMS5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMS5_PYTIN)

HSP 1 Score: 82.4 bits (202), Expect = 6.670e-19
Identity = 38/66 (57.58%), Postives = 51/66 (77.27%), Query Frame = 1
Query:   31 VPPSVIPDHHQGSKSDFGGEVDIEEAIDKSGCSSVYYLLEDCLGEHDRDWRRCQ---EQVERCRDR 219
            VPP+V+   HQGSKSDFG ++DI++ I+K GCS  YY LE+CLGE+DRDW +CQ   +Q++ C DR
Sbjct:    9 VPPAVVAGLHQGSKSDFGEDLDIDDMIEKMGCSKDYYALEECLGEYDRDWTKCQTYVKQLKVCNDR 74          
BLAST of mRNA_L-elsbetiae_contig1604.4163.1 vs. uniprot
Match: A0A8K1CK47_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK47_PYTOL)

HSP 1 Score: 79.3 bits (194), Expect = 7.550e-18
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   37 PSVIPDHHQGSKSDFGGEVDIEEAIDKSGCSSVYYLLEDCLGEHDRDWRRCQEQVER---CRDR 219
            P VIP  H GS+SDFG +VDI+E I+K GCS  YY LE+CLGE+DRDW +CQ +V+    C DR
Sbjct:    9 PPVIPGLHAGSQSDFGSDVDIDEMIEKMGCSKDYYKLEECLGEYDRDWTKCQVEVKALKACNDR 72          
BLAST of mRNA_L-elsbetiae_contig1604.4163.1 vs. uniprot
Match: K3X4R7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4R7_GLOUD)

HSP 1 Score: 75.1 bits (183), Expect = 4.390e-16
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   31 VPPSVIPDHHQGSKSDFGGEVDIEEAIDKSGCSSVYYLLEDCLGEHDRDWRRCQEQVER---CRDR 219
            VPP V+P  H GS+SDFG ++DI+  I+K GC+  YY LE+CLGE+DR+W +CQ QV++   C DR
Sbjct:   20 VPP-VVPGLHAGSQSDFGDDIDIDAMIEKMGCAQDYYKLEECLGEYDRNWTKCQAQVKQLKLCNDR 84          
BLAST of mRNA_L-elsbetiae_contig1604.4163.1 vs. uniprot
Match: A0A5D6XP60_9STRA (HECT domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP60_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.370e-15
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   34 PPSVIPDHHQGSKSDFGGEVDIEEAIDKSGCSSVYYLLEDCLGEHDRDWRRCQEQVERCR 213
            PP V+   H GSKSDFG ++DI++ I++ GC+  YY LEDCLGE DRDW +CQ QV++ R
Sbjct:  817 PPQVVAGLHAGSKSDFGADLDIDDMIERMGCAKDYYKLEDCLGEFDRDWTKCQAQVKQLR 876          
BLAST of mRNA_L-elsbetiae_contig1604.4163.1 vs. uniprot
Match: A0A1V9YI71_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YI71_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.740e-13
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   34 PPSVIPD-HHQGSKSDFGGEVDIEEAIDKSGCSSVYYLLEDCLGEHDRDWRRCQEQVERCR 213
            PPSV+P   H GSKSDF    DIE+ ID++ C+ VYY LEDCL E+DR+W +CQ+ V+  R
Sbjct:    5 PPSVLPPPQHLGSKSDFD---DIEDLIDRNACAKVYYKLEDCLAEYDRNWSKCQDIVKALR 62          
BLAST of mRNA_L-elsbetiae_contig1604.4163.1 vs. uniprot
Match: A0A024TVW5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TVW5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.030e-11
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   25 PPVPPSVIPDH-HQGSKSDFGGEVDIEEAIDKSGCSSVYYLLEDCLGEHDRDWRRCQEQV 201
            PPVPP+      H GSKSDF    DIE  I+++ C+  YY LE+CLGE+DRDW +CQE V
Sbjct:    6 PPVPPTATSAPIHLGSKSDFD---DIEGMIERNKCAKEYYKLEECLGEYDRDWTKCQEVV 62          
BLAST of mRNA_L-elsbetiae_contig1604.4163.1 vs. uniprot
Match: A0A6G0XA92_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XA92_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.610e-10
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   16 PDRPPVP-PSVIPDHHQGSKSDFGGEVDIEEAIDKSGCSSVYYLLEDCLGEHDRDWRRCQEQV 201
            P  P +P PS +P  H GSKSDF    DIE  I+++ C+  YY LE+CLGE DRDW +CQ+ V
Sbjct:    2 PPPPSIPKPSEVP-LHLGSKSDFD---DIEGMIERNKCAKEYYKLEECLGEFDRDWTKCQDVV 60          
BLAST of mRNA_L-elsbetiae_contig1604.4163.1 vs. uniprot
Match: W4FY67_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FY67_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.960e-9
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   28 PVPPSVIPDH-HQGSKSDFGGEVDIEEAIDKSGCSSVYYLLEDCLGEHDRDWRRCQEQV 201
            P+PP+      H GSKSDF    DIE  I+++ C+  YY LE+CLGE+DRDW +CQ+ V
Sbjct:    7 PLPPTAATAPVHLGSKSDFD---DIEGMIERNKCAVEYYKLEECLGEYDRDWTKCQDIV 62          
BLAST of mRNA_L-elsbetiae_contig1604.4163.1 vs. uniprot
Match: A0A485LEE4_9STRA (Aste57867_19537 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LEE4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.590e-9
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   25 PPVPPSVIPDHHQGSKSDFGGEVDIEEAIDKSGCSSVYYLLEDCLGEHDRDWRRCQEQV 201
            PP+P S  P  H GSKSD+    DI+  I+++ C+  YY LE+CLGE DRDW +CQ+ V
Sbjct:    9 PPIP-SAAP-LHLGSKSDYD---DIDGMIERNKCAKEYYKLEECLGEFDRDWTKCQDVV 62          
BLAST of mRNA_L-elsbetiae_contig1604.4163.1 vs. uniprot
Match: A0A5B8MJ19_9CHLO (Uncharacterized protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MJ19_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 5.060e-8
Identity = 25/50 (50.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   55 HHQGSKSDFGGEVD-IEEAIDKSGCSSVYYLLEDCLGEHDRDWRRCQEQV 201
            H   ++S  G E+D +E+ I+++GCS  YY LE CLGE++RDWR+CQ++V
Sbjct:   14 HVARTRSPTGEELDDVEKVIEQAGCSKTYYELEVCLGENERDWRKCQKEV 63          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1604.4163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A2D4BMS5_PYTIN6.670e-1957.58Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1CK47_PYTOL7.550e-1859.38Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X4R7_GLOUD4.390e-1654.55Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XP60_9STRA3.370e-1556.67HECT domain-containing protein n=1 Tax=Pythium bra... [more]
A0A1V9YI71_9STRA2.740e-1355.74Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A024TVW5_9STRA1.030e-1155.00Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0XA92_9STRA4.610e-1052.38Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4FY67_9STRA1.960e-950.85Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485LEE4_9STRA5.590e-950.85Aste57867_19537 protein n=1 Tax=Aphanomyces stella... [more]
A0A5B8MJ19_9CHLO5.060e-850.00Uncharacterized protein n=1 Tax=Chloropicon primus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1604contigL-elsbetiae_contig1604:1620..1838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog115417.EPrPW00000013995
KEGG koko:K18177
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Coiled-coil-helix-coiled-coil-helix domain containing 8. Source PGD
EggNOG OGs1MI3S@121069,2E4K7@1,2SBFX@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Exons1
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.339592-CDS-L-elsbetiae_contig1604:1619..18381622815662.339592-CDS-L-elsbetiae_contig1604:1619..1838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1604 1620..1838 +
1691683022.3609693-CDS-L-elsbetiae_contig1604:1619..18381691683022.3609693-CDS-L-elsbetiae_contig1604:1619..1838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1604 1620..1838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1604.4163.1prot_L-elsbetiae_contig1604.4163.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1604 1620..1838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1604.4163.1

>prot_L-elsbetiae_contig1604.4163.1 ID=prot_L-elsbetiae_contig1604.4163.1|Name=mRNA_L-elsbetiae_contig1604.4163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MGSKGPDRPPVPPSVIPDHHQGSKSDFGGEVDIEEAIDKSGCSSVYYLLE
DCLGEHDRDWRRCQEQVERCRDR
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mRNA from alignment at L-elsbetiae_contig1604:1620..1838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1604.4163.1 ID=mRNA_L-elsbetiae_contig1604.4163.1|Name=mRNA_L-elsbetiae_contig1604.4163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=219bp|location=Sequence derived from alignment at L-elsbetiae_contig1604:1620..1838+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGATCCAAGGGTCCTGATCGCCCTCCTGTGCCTCCTTCGGTCATCCC AGATCATCACCAGGGATCGAAGAGTGACTTCGGTGGGGAAGTGGACATCG AGGAGGCAATCGACAAGAGTGGGTGCTCCTCAGTGTACTATTTACTCGAG GACTGCCTAGGAGAGCACGATCGGGACTGGAGGCGGTGCCAAGAGCAGGT TGAGCGATGCCGCGATAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1604:1620..1838+

>mRNA_L-elsbetiae_contig1604.4163.1 ID=mRNA_L-elsbetiae_contig1604.4163.1|Name=mRNA_L-elsbetiae_contig1604.4163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig1604:1620..1838+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGATCCAAGGGTCCTGATCGCCCTCCTGTGCCTCCTTCGGTCATCCC
AGATCATCACCAGGGATCGAAGAGTGACTTCGGTGGGGAAGTGGACATCG
AGGAGGCAATCGACAAGAGTGGGTGCTCCTCAGTGTACTATTTACTCGAG
GACTGCCTAGGAGAGCACGATCGGGACTGGAGGCGGTGCCAAGAGCAGGT
TGAGCGATGCCGCGATAGGATGGGATCCAAGGGTCCTGATCGCCCTCCTG
TGCCTCCTTCGGTCATCCCAGATCATCACCAGGGATCGAAGAGTGACTTC
GGTGGGGAAGTGGACATCGAGGAGGCAATCGACAAGAGTGGGTGCTCCTC
AGTGTACTATTTACTCGAGGACTGCCTAGGAGAGCACGATCGGGACTGGA
GGCGGTGCCAAGAGCAGGTTGAGCGATGCCGCGATAGG
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