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Homology
BLAST of mRNA_L-elsbetiae_contig16.4132.1 vs. uniprot
Match: D7FLM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM3_ECTSI) HSP 1 Score: 354 bits (908), Expect = 2.300e-119 Identity = 202/312 (64.74%), Postives = 228/312 (73.08%), Query Frame = 1
Query: 1 MGFAARKCMTPGEGHPQLAHAKRHDGGGPGPGTYATGDSAVMGHRGGTFAAQDERRRAAAALEMTVCRLKTLEWRIEFIRRGLREPEGLRPGQALLVKVQSGRELERIEAKASRLRSEVERLVSLATAADAKRDPLPGASLG--GDANGCRGXXXXXXXXXXPATTAGVGGAGSGKRQACGQGSDRFYDPVPSTASFRDSPGPGTYDV---EGAFGKASLRRSPSFDLMQRRVVGERAAPGRSLASLRLHATTAGDPGGGGEDDGFGGTKRGDGLGAPFHAYMADAGPGCYTPDMCAPPLPNEARRGRGRGG 921
MG ARKCMTPG+ HPQL HAKR DG GPGPG YATGDSAVMGH GGTFAA D RR A AALEM V RLKTLEWRIEFIRRG REPE LRPGQ+L+V+ QSG+EL R+E KASRLRSE++RL LA + + RDPLPGAS+G G A G PATTA G KR GQG DRFYDP+ STA+F +SPGPG Y + EGAFG+AS+ RSP+FDLMQRRV+G++AA GRSLASL LH+ G GG G + GG DGLGAPFHAY+++ G G YTPDM APPLPNEARR R GG
Sbjct: 1 MGCGARKCMTPGKDHPQLPHAKRRDGAGPGPGAYATGDSAVMGHHGGTFAAADNRRAATAALEMVVGRLKTLEWRIEFIRRGEREPEKLRPGQSLVVRTQSGQELMRMEEKASRLRSEIKRLGKLAASEASTRDPLPGASIGRGGRAGG---------NERRPATTAADCSTGRDKRGPAGQGKDRFYDPISSTATFLESPGPGAYSLTSGEGAFGRASISRSPAFDLMQRRVIGDQAAAGRSLASLHLHSAENG--GGSGSGNSRGGR---DGLGAPFHAYLSETGTGHYTPDMSAPPLPNEARRWRRGGG 298
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-17_000600.1 |
| Exons | 5 |
| Model size | 933 |
| Cds size | 933 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815658.8218877-CDS-L-elsbetiae_contig16:1541..1824 | 1622815658.8218877-CDS-L-elsbetiae_contig16:1541..1824 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16 1542..1824 - |
| 1691683019.9039671-CDS-L-elsbetiae_contig16:1541..1824 | 1691683019.9039671-CDS-L-elsbetiae_contig16:1541..1824 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16 1542..1824 - |
| 1622815658.834335-CDS-L-elsbetiae_contig16:2162..2272 | 1622815658.834335-CDS-L-elsbetiae_contig16:2162..2272 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16 2163..2272 - |
| 1691683019.9189146-CDS-L-elsbetiae_contig16:2162..2272 | 1691683019.9189146-CDS-L-elsbetiae_contig16:2162..2272 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16 2163..2272 - |
| 1622815658.8448699-CDS-L-elsbetiae_contig16:2953..3230 | 1622815658.8448699-CDS-L-elsbetiae_contig16:2953..3230 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16 2954..3230 - |
| 1691683019.9297252-CDS-L-elsbetiae_contig16:2953..3230 | 1691683019.9297252-CDS-L-elsbetiae_contig16:2953..3230 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16 2954..3230 - |
| 1622815658.8583493-CDS-L-elsbetiae_contig16:3890..4044 | 1622815658.8583493-CDS-L-elsbetiae_contig16:3890..4044 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16 3891..4044 - |
| 1691683019.9383504-CDS-L-elsbetiae_contig16:3890..4044 | 1691683019.9383504-CDS-L-elsbetiae_contig16:3890..4044 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16 3891..4044 - |
| 1622815658.8707986-CDS-L-elsbetiae_contig16:5159..5268 | 1622815658.8707986-CDS-L-elsbetiae_contig16:5159..5268 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16 5160..5268 - |
| 1691683019.9507682-CDS-L-elsbetiae_contig16:5159..5268 | 1691683019.9507682-CDS-L-elsbetiae_contig16:5159..5268 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16 5160..5268 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig16.4132.1 >prot_L-elsbetiae_contig16.4132.1 ID=prot_L-elsbetiae_contig16.4132.1|Name=mRNA_L-elsbetiae_contig16.4132.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=311bp
MGFAARKCMTPGEGHPQLAHAKRHDGGGPGPGTYATGDSAVMGHRGGTFA
AQDERRRAAAALEMTVCRLKTLEWRIEFIRRGLREPEGLRPGQALLVKVQ
SGRELERIEAKASRLRSEVERLVSLATAADAKRDPLPGASLGGDANGCRG
GGRGRGPGRRPATTAGVGGAGSGKRQACGQGSDRFYDPVPSTASFRDSPG
PGTYDVEGAFGKASLRRSPSFDLMQRRVVGERAAPGRSLASLRLHATTAG
DPGGGGEDDGFGGTKRGDGLGAPFHAYMADAGPGCYTPDMCAPPLPNEAR
RGRGRGGAHR* back to topmRNA from alignment at L-elsbetiae_contig16:1542..5268- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig16.4132.1 ID=mRNA_L-elsbetiae_contig16.4132.1|Name=mRNA_L-elsbetiae_contig16.4132.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3727bp|location=Sequence derived from alignment at L-elsbetiae_contig16:1542..5268- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGTTTGCCGCGCGCAAGTGCATGACCCCGGGCGAGGGCCATCCCCA
GCTTGCCCACGCCAAGCGGCACGACGGCGGGGGGCCCGGGCCCGGCACGT
ACGCCACCGGTGAGCGAGGGAGGGGGTGCAAAAAGGCGGCCCCGCTGCAA
TGAGCGGGGTCGTTGAGTCCACGCGGCGATGAGAATAAATAGAAATAAGC
TTACCACATTTGACGGATTGTCTCTTTTCGAAGATGGGGTGTCAAGAAAA
CGAGATAAGCATTCCACGCCGGACATTTCCGCTGTACATATGGTCCGTGC
ACAACAATTTGTCCAATAATTTCATCGGCGGGGATGACAACTTTTCTCTG
CACACAGGTGGTTGTTCCAAAATCCGAAAGTACCGGCCAACGCCCTGTCT
CCAGGCGCACAAACTGACGGAGAGTTTTTATTTATTTTTCTTCCTCGATT
TTTAATCAGAGATAAACCGTGAAATCTTGTTTTGTTTTACCTGAGAGGTG
GTGTTGGGCTATTACAAATATCTCAACGGGTTTGAACACATCTCGGAATT
TGCCAGAGGGTTTTTTATTTTTTTGAAAAATATACAAAATTGACGAAGAT
ATCGCAGAATAACCGGATCTAGAGGGTCAACTTGTTTTGTTTTATATGAG
ATAACTGACCGCATGATTTTAAAATAGAGTGCGGCAAACGATTCCTCTCA
TCAATCCGCATAGGGGTATTTTGTATTTCGCCGGGAAAAATCTTGTTCGC
GAGATATTCGACATTTTGTCCAAAACCCTGATTTTTTCCCAGTCTTTAAC
TTTTTCGGCGACACAATCACTTGAACTTAGTGCTGAGGTGTCCAAAATGT
TTTCAAAATATTTGTTGCTCCTCTTGCTGTGGGGGATCACTACCATACCT
CAAAAGTGGTCTAACTCGTTTTCTTTCGAAAGTTATGACAAAAAACGTGA
ATTGGACAAATTGTTGTGCACGGACCATACATATATGCATCTGTTTCCCG
CACACCCGCTGGCGTGGTAGGGCTTAGGCCTGTGTTCGCGCGCGGATGCT
CGTGCAAGTGTCGAGGGGGGCTGTCGGATGCAGACGTAGCTGCCGCGGCT
GTGGCGCTTGCTGCTTTGGTCCAGGGGGGGCTGTATTTATCCATCGTACA
AAGACACGGCGGTCATTGCAACTTATCCATCGTACAAAGACTCGGCGGTC
AATGCAAGCGTCGTTTCCTGCCAGGCGACTCGGCGGTGATGGGACACCGG
GGAGGGACGTTCGCGGCTCAGGACGAGAGGAGGAGGGCGGCCGCCGCGTT
GGAGATGACCGTCTGTCGGCTCAAGACGCTGGAGTGGCGGATAGAGTTCA
TTCGGCGCGGACTTAGAGAGCCCGAGGGGTGAGCCGTCGCGGTGAAGGTG
ACCGGTTGATATCACAGCAAGCGCAGAGAAGCTCCCGTCTCTCTCTCTCT
CTCTCTCTCTCTGCCTCTCTCTCTGCCTCTATCTCTCCCTCTGTTTCCTT
GTCTCTCCCTCTCTCTCTCTCTTCTTACATATCAGCGTACTCTTTTTCGC
CCCCCGTACGCACACCTGCTGCTGTTGATCGGACTGTTCTCCCCGTGCAT
AGTGCACATATGTGGTAGGGGATTCTTTCTTCCAACACATCAGCGTACTT
GTTTTCACCCACAGTACACCTGCTGCTGAGTATCGGATTGTTTTCCCCGT
GCACTGTACGCTATAGGGGAAGCAAGGTTCTTGTAAAATCTCAAGCTCAA
GCTTTTTGATTTAGAGGTCTTCGCGTATGTACCGCTGCCGTCGCTGCACC
ACCCCTTTTTTCGAGTGCGCCCCCGCCATTGCACGGCGGGATTGATGTTG
AGCATTATGGTAGCTATGTTAACCCAGGAACGGGCGTTTCGTAGTGATCC
TATTGCTGCCTCTGCGCAGTAGGCATACGCGGATCCTCCTCTCGCTCCGT
ACATTTACCTACACACGGAACCCCCGGGAGGGGACACGCAGATCGGACTC
ATATCCTAAAGCACCACGAATACCCTTTTTGCGCCCAGACTACGGCCGGG
CCAGGCGCTCCTCGTCAAGGTCCAGTCCGGTCGGGAGCTGGAGAGGATCG
AGGCGAAAGCATCCCGCTTGAGGTCGGAGGTTGAACGCCTGGTCAGCCTT
GCCACGGCGGCCGACGCAAAGCGAGATCCTCTTCCCGGAGCGTCTCTCGG
GGGCGACGCCAACGGCTGCAGGGGAGGGGGGAGGGGAAGGGGTCCTGGTA
GACGCCCGGCCACTACGGCGGGGGTCGGCGGCGCCGGGAGTGGGAAGCGC
CAAGCTTGCGGCCAGGTTCGTCCCGCCGGCGAAAAGGGGGCACTACTGTG
TCTCGTATGTTCCTGTGATGGGCAGGCGCGCCGTGAGGATGGACCCACTC
TATGAAAGCCGAGTCCTTACGTATAAGGCCATCACCGTGAACGGGTCCTC
GTGTTCCAGGTTAAGCAGCGCGCGCATGCCACAGTGCAGCGCAGCGCAGT
ACGAGGAGCGCCAAGCGTGCGCGATACATTGGCCATGAAAACGGCGTGGA
AAGCCGACTTTTGTTGGATACTTCTTCGCAATTTTGTGTTTGTCGTCTTC
GCCGTGCGTCCTCGTGTGCCAGGCTATGCAGTGCGTGCATGCCACAGTGC
AGCGCAGCGCAGCGCAGCACGAGGAGCGCAAAGCATGCGCGATACTTAAT
ACACCATGAAAACGGCGTGTTAAGCCGACCTTTGTCGGATACTCTTCTTC
GCAATTTTGTGTTTTGTCCTCTTCGCCGTGCGACCCCCGCACCCCCCTTT
CGTTTGCCAACAGCAGCTGGACGCTACTGTAACTATGTAGGTTATCTTGT
TTTGGTCCAGGGGTACGCATTCACTCTATTGTAGCCCGCCGCTAAATGCC
TATCTAAATGAGCCGAGCGCAAACCAAGGCGCCTCTCCCCCACTTCCACC
TGTCGCCTGTCCTTCGCTTACCTTCGCGCGTGGTAAACGGGGTCAGGGGA
GTGACCGGTTCTACGACCCCGTCCCAAGCACGGCTTCTTTCCGGGACTCC
CCGGGCCCGGGCACGTACGACGTCGAGGGGGCTTTCGGGAAGGCTTCGCT
CCGGAGGTGAGGGTGTTTGGCTGCATCGTTTTGGAAGTAGCAATTGGTTG
GTCTCTTTTTCACTTTCGCCATCATAGACTTGTACTGCTTGGAGCTTTGT
ATCAGGCCGAACTACAATCTTACTGCCAAGGTGGAAACGTCTTGGGGGGG
TCTGGAATCCCGTGCTCTGTGCTGCTACTGCTGCCGTCGGTGCATATGCA
TGCACGGTGCATGATTTTCGGGGCAGGGTGGTGAAGCGCTGCCGCGCACA
ACTCTCTGGAGTAGCCACCATACATAGTCGCGATCTATACTTCATCGCTG
AGCGCGCTGCCGTGCCTTACCTTCACCACTCCACGTCAATGAAGGTCTCC
GTCGTTCGACCTGATGCAACGGAGGGTTGTTGGAGAGCGAGCCGCACCCG
GCCGCAGCCTGGCTTCCCTCCGCCTCCACGCCACCACGGCCGGCGACCCT
GGGGGCGGCGGCGAGGACGACGGCTTCGGGGGCACGAAAAGGGGCGACGG
GCTTGGCGCGCCGTTCCACGCTTACATGGCCGATGCTGGGCCCGGCTGCT
ACACCCCGGACATGTGCGCGCCCCCGCTCCCGAACGAAGCTCGGCGGGGG
CGGGGGCGGGGTGGAGCACACCGATGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig16:1542..5268- >mRNA_L-elsbetiae_contig16.4132.1 ID=mRNA_L-elsbetiae_contig16.4132.1|Name=mRNA_L-elsbetiae_contig16.4132.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1866bp|location=Sequence derived from alignment at L-elsbetiae_contig16:1542..5268- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGTTTGCCGCGCGCAAGTGCATGACCCCGGGCGAGGGCCATCCCCA
GCTTGCCCACGCCAAGCGGCACGACGGCGGGGGGCCCGGGCCCGGCACGT
ACGCCACCGATGGGGTTTGCCGCGCGCAAGTGCATGACCCCGGGCGAGGG
CCATCCCCAGCTTGCCCACGCCAAGCGGCACGACGGCGGGGGGCCCGGGC
CCGGCACGTACGCCACCGGCGACTCGGCGGTGATGGGACACCGGGGAGGG
ACGTTCGCGGCTCAGGACGAGAGGAGGAGGGCGGCCGCCGCGTTGGAGAT
GACCGTCTGTCGGCTCAAGACGCTGGAGTGGCGGATAGAGTTCATTCGGC
GCGGACTTAGAGAGCCCGAGGGGCGACTCGGCGGTGATGGGACACCGGGG
AGGGACGTTCGCGGCTCAGGACGAGAGGAGGAGGGCGGCCGCCGCGTTGG
AGATGACCGTCTGTCGGCTCAAGACGCTGGAGTGGCGGATAGAGTTCATT
CGGCGCGGACTTAGAGAGCCCGAGGGACTACGGCCGGGCCAGGCGCTCCT
CGTCAAGGTCCAGTCCGGTCGGGAGCTGGAGAGGATCGAGGCGAAAGCAT
CCCGCTTGAGGTCGGAGGTTGAACGCCTGGTCAGCCTTGCCACGGCGGCC
GACGCAAAGCGAGATCCTCTTCCCGGAGCGTCTCTCGGGGGCGACGCCAA
CGGCTGCAGGGGAGGGGGGAGGGGAAGGGGTCCTGGTAGACGCCCGGCCA
CTACGGCGGGGGTCGGCGGCGCCGGGAGTGGGAAGCGCCAAGCTTGCGGC
CAGACTACGGCCGGGCCAGGCGCTCCTCGTCAAGGTCCAGTCCGGTCGGG
AGCTGGAGAGGATCGAGGCGAAAGCATCCCGCTTGAGGTCGGAGGTTGAA
CGCCTGGTCAGCCTTGCCACGGCGGCCGACGCAAAGCGAGATCCTCTTCC
CGGAGCGTCTCTCGGGGGCGACGCCAACGGCTGCAGGGGAGGGGGGAGGG
GAAGGGGTCCTGGTAGACGCCCGGCCACTACGGCGGGGGTCGGCGGCGCC
GGGAGTGGGAAGCGCCAAGCTTGCGGCCAGGGGAGTGACCGGTTCTACGA
CCCCGTCCCAAGCACGGCTTCTTTCCGGGACTCCCCGGGCCCGGGCACGT
ACGACGTCGAGGGGGCTTTCGGGAAGGCTTCGCTCCGGAGGGGAGTGACC
GGTTCTACGACCCCGTCCCAAGCACGGCTTCTTTCCGGGACTCCCCGGGC
CCGGGCACGTACGACGTCGAGGGGGCTTTCGGGAAGGCTTCGCTCCGGAG
GTCTCCGTCGTTCGACCTGATGCAACGGAGGGTTGTTGGAGAGCGAGCCG
CACCCGGCCGCAGCCTGGCTTCCCTCCGCCTCCACGCCACCACGGCCGGC
GACCCTGGGGGCGGCGGCGAGGACGACGGCTTCGGGGGCACGAAAAGGGG
CGACGGGCTTGGCGCGCCGTTCCACGCTTACATGGCCGATGCTGGGCCCG
GCTGCTACACCCCGGACATGTGCGCGCCCCCGCTCCCGAACGAAGCTCGG
CGGGGGCGGGGGCGGGGTGGAGCACACCGATGAGTCTCCGTCGTTCGACC
TGATGCAACGGAGGGTTGTTGGAGAGCGAGCCGCACCCGGCCGCAGCCTG
GCTTCCCTCCGCCTCCACGCCACCACGGCCGGCGACCCTGGGGGCGGCGG
CGAGGACGACGGCTTCGGGGGCACGAAAAGGGGCGACGGGCTTGGCGCGC
CGTTCCACGCTTACATGGCCGATGCTGGGCCCGGCTGCTACACCCCGGAC
ATGTGCGCGCCCCCGCTCCCGAACGAAGCTCGGCGGGGGCGGGGGCGGGG
TGGAGCACACCGATGA back to top
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