mRNA_L-elsbetiae_contig1579.4032.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1579.4032.1
Unique NamemRNA_L-elsbetiae_contig1579.4032.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1579.4032.1 vs. uniprot
Match: A0A6H5JGF9_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF9_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.100e-42
Identity = 75/88 (85.23%), Postives = 81/88 (92.05%), Query Frame = 3 
Query:   39 MSARLSGVQREVNQLYRLLLRAAKLKDGGGWTGTTTALVRAEFREQAESVGRADFRTIEHLLRAGNKKLKLLEMPGVKAAAGVTVERR 302
            MSARLSGVQREVN+LYRLLLRAA++KDGG W G+TT LVRAEFR QAESV R DFRTIEHLLRAGNKKLKLL+MPGVKAAAG+TV RR
Sbjct:    1 MSARLSGVQREVNKLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVARTDFRTIEHLLRAGNKKLKLLKMPGVKAAAGITVVRR 88
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BLAST of mRNA_L-elsbetiae_contig1579.4032.1 vs. uniprot
Match: D7FX23_ECTSI (Heat shock protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX23_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.050e-37
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 3 
Query:   54 SGVQREVNQLYRLLLRAAKLKDGGGWTGTTTALVRAEFREQAESVGRADFRTIEHLLRAGNKKLKLLEMPGVKAAAGVTVERR 302
            S  +REVNQLYRLLLRAA++KDGG W G+TT LVRAEFR QAESVGR DFRTIEHLLRAGNKKLKLL+MPGVKAAAG+TV RR
Sbjct:   52 SPTKREVNQLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVGRTDFRTIEHLLRAGNKKLKLLKMPGVKAAAGITVARR 134
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BLAST of mRNA_L-elsbetiae_contig1579.4032.1 vs. uniprot
Match: A0A7S1ZYE5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZYE5_TRICV)

HSP 1 Score: 73.2 bits (178), Expect = 5.620e-13
Identity = 46/110 (41.82%), Postives = 59/110 (53.64%), Query Frame = 3 
Query:   45 ARLSGVQREVNQLYRLLLRAAKLKD---------GGGW----------------TGTTTALVRAEFREQAESVGRADFRTIEHLLRAGNKKLKLLEMPGVKAAAGVTVER 299
            ARLSG+QR+V  LYR +LR A  KD         GG +                  TTT+  R+EFR++A S+ R DFRTIEH++R G K++KLL MPGV         R
Sbjct:    5 ARLSGLQRQVLALYRSVLREAARKDRSAASNRNDGGEYFLVLLSTDKCPSSPPGDATTTSYARSEFRKKAASIPRNDFRTIEHMIRWGQKQIKLLRMPGVSFVGSPNARR 114
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BLAST of mRNA_L-elsbetiae_contig1579.4032.1 vs. uniprot
Match: C5DJD6_LACTC (KLTH0F15576p n=2 Tax=Lachancea TaxID=300275 RepID=C5DJD6_LACTC)

HSP 1 Score: 62.0 bits (149), Expect = 3.350e-9
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 3 
Query:   39 MSARLSGVQREVNQLYRLLLRAAKLKDGGGWTGTTTALVRAEFREQAESVGRADFRTIEHLLRAGNKKLKLLEMPGVK 272
            M+ RLSG+QREV Q+YR  +RAA  K         T  +R EFR Q + + R DF TIEHLLR G+++L++   P VK
Sbjct:    1 MAKRLSGLQREVLQMYRQCIRAAHDKPKANQPNFVTH-IRKEFR-QYQDLPRKDFSTIEHLLRVGHRRLEMYSQPEVK 76
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BLAST of mRNA_L-elsbetiae_contig1579.4032.1 vs. uniprot
Match: A0A6U0URI4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0URI4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 5.090e-9
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:   54 SGVQREVNQLYRLLLRAAKLKDGGGWTGTTTALVRAEFREQAESVGRADFRTIEHLLRAGNKKLKLLE 257
            SGVQ EV  LYR LLR AK K        T A+VR +FRE A SV R++ R IEHL+R G KK++LL+
Sbjct:   65 SGVQTEVLNLYRQLLRLAKAKGPD-----TYAMVRNKFREDARSVKRSEIRLIEHLVRQGKKKVRLLQ 127
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BLAST of mRNA_L-elsbetiae_contig1579.4032.1 vs. uniprot
Match: K3X5D9_GLOUD (Complex1_LYR_dom domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5D9_GLOUD)

HSP 1 Score: 60.1 bits (144), Expect = 3.700e-8
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 3 
Query:    6 LLAVTGNPAVTMS---ARLSGVQREVNQLYRLLLRAAKLKD------GGGWTGTTTAL--VRAEFREQAESVGRADFRTIEHLLRAGNKKLKLLE-MPGVK 272
            ++AV  + A T+    A  SG+Q +V  LY+  LR A+ KD        G T   + L  VR  FR+ A SVGR DF  IEHL+R G + +K++E M G K
Sbjct:    1 MVAVVNSAAKTLKPKGATHSGLQMQVLALYKKALRTAQQKDRELVAASSGATAEVSTLTYVRERFRDDARSVGRMDFNVIEHLIRKGERDIKMMERMKGAK 101
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BLAST of mRNA_L-elsbetiae_contig1579.4032.1 vs. uniprot
Match: C1E625_MICCC (Complex1_LYR_dom domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E625_MICCC)

HSP 1 Score: 58.2 bits (139), Expect = 1.010e-7
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 3 
Query:   48 RLSGVQREVNQLYRLLLRAAKLKDGGGWTGTTTALVRAEFREQAESVGRADFRTIEHLLRAGNKKLKLLEMPGVKAAAGVT 290
            RLSG+ R+   L+R LLRAA+ K      G   A +RAEF E+   +   D + +EH +RAG KKL L++ P V AA+G++
Sbjct:    5 RLSGLARQALSLHRALLRAARRKSPEARAGIEAA-IRAEF-ERHRHLDPRDLQAVEHRIRAGRKKLALIDDPNVVAASGMS 83
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BLAST of mRNA_L-elsbetiae_contig1579.4032.1 vs. uniprot
Match: C1MMP0_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MMP0_MICPC)

HSP 1 Score: 57.8 bits (138), Expect = 1.310e-7
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 3 
Query:   45 ARLSGVQREVNQLYRLLLRAAKLKDGGGWTGTTTALVRAEFREQAESVGRADFRTIEHLLRAGNKKLKLLEMPGVKAA 278
            ARLSG+ ++V  L+R LLRAA+ KD        +  +R +F   A    R D   +EHL+RAGNKKL +L  P V  A
Sbjct:    4 ARLSGLAKQVLSLHRSLLRAARSKDATA-RAAISRQIRDDFERHARLDPRKDVLLVEHLIRAGNKKLAMLRDPNVVGA 80
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BLAST of mRNA_L-elsbetiae_contig1579.4032.1 vs. uniprot
Match: A0A2D4C155_PYTIN (Complex1_LYR_dom domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C155_PYTIN)

HSP 1 Score: 57.4 bits (137), Expect = 2.610e-7
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 3 
Query:   45 ARLSGVQREVNQLYRLLLRAAKLKDGG-----------GWTGTTTALVRAEFREQAESVGRADFRTIEHLLRAGNKKLKLLEMPGVKAAAGVTVER 299
            AR SG+Q +V  L+R  LR AK KD                G +   VR  FR+ A SVGR++F  IEHLLR G + LK+LE   +K+A+  +V R
Sbjct:    2 ARHSGLQLQVLTLFRSALRVAKRKDDALALEQGLRNTAYRQGPSYCFVRERFRDDALSVGRSNFAMIEHLLRKGQRDLKMLER--MKSASFASVXR 95
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BLAST of mRNA_L-elsbetiae_contig1579.4032.1 vs. uniprot
Match: A0A1G4MEN0_LACFM (LAFE_0F03752g1_1 n=1 Tax=Lachancea fermentati TaxID=4955 RepID=A0A1G4MEN0_LACFM)

HSP 1 Score: 56.6 bits (135), Expect = 3.310e-7
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 3 
Query:   39 MSARLSGVQREVNQLYRLLLRAAKLKDGGGWTGTTTALVRAEFREQAESVGRADFRTIEHLLRAGNKKLKLLEMPGVK 272
            MS R+SG+QREV QLYR  +RAA  K            +R+EF  Q + + R +F TIEHLLR G+K+L++   P +K
Sbjct:    1 MSRRVSGLQREVLQLYRQCIRAAHTKPKDNQP-RFLKYIRSEFG-QYKDLPRKEFSTIEHLLRVGHKRLEMYSAPELK 76
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1579.4032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5JGF9_9PHAE3.100e-4285.23Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D7FX23_ECTSI1.050e-3783.13Heat shock protein, putative n=1 Tax=Ectocarpus si... [more]
A0A7S1ZYE5_TRICV5.620e-1341.82Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
C5DJD6_LACTC3.350e-947.44KLTH0F15576p n=2 Tax=Lachancea TaxID=300275 RepID=... [more]
A0A6U0URI4_9STRA5.090e-954.41Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
K3X5D9_GLOUD3.700e-840.59Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
C1E625_MICCC1.010e-743.21Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
C1MMP0_MICPC1.310e-743.59Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A2D4C155_PYTIN2.610e-741.67Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A1G4MEN0_LACFM3.310e-744.87LAFE_0F03752g1_1 n=1 Tax=Lachancea fermentati TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1579contigL-elsbetiae_contig1579:201..2510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog653948.CCA23842
KEGG koko:K18167
Hectar predicted targeting categoryother localisation
EggNOG OGs2E0UV@1,2S88D@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-10_003990.1
Exons3
Model size731
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1579.4032.1prot_L-elsbetiae_contig1579.4032.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1579 1143..2472 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.32501-UTR-L-elsbetiae_contig1579:200..4191622815648.32501-UTR-L-elsbetiae_contig1579:200..419Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1579 201..419 -
1691683013.2124903-UTR-L-elsbetiae_contig1579:200..4191691683013.2124903-UTR-L-elsbetiae_contig1579:200..419Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1579 201..419 -
1622815648.344795-UTR-L-elsbetiae_contig1579:935..11421622815648.344795-UTR-L-elsbetiae_contig1579:935..1142Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1579 936..1142 -
1691683013.2305276-UTR-L-elsbetiae_contig1579:935..11421691683013.2305276-UTR-L-elsbetiae_contig1579:935..1142Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1579 936..1142 -
1622815648.3815742-UTR-L-elsbetiae_contig1579:2472..25101622815648.3815742-UTR-L-elsbetiae_contig1579:2472..2510Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1579 2473..2510 -
1691683013.2625382-UTR-L-elsbetiae_contig1579:2472..25101691683013.2625382-UTR-L-elsbetiae_contig1579:2472..2510Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1579 2473..2510 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.3546612-CDS-L-elsbetiae_contig1579:1142..12711622815648.3546612-CDS-L-elsbetiae_contig1579:1142..1271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1579 1143..1271 -
1691683013.2391827-CDS-L-elsbetiae_contig1579:1142..12711691683013.2391827-CDS-L-elsbetiae_contig1579:1142..1271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1579 1143..1271 -
1622815648.365787-CDS-L-elsbetiae_contig1579:2334..24721622815648.365787-CDS-L-elsbetiae_contig1579:2334..2472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1579 2335..2472 -
1691683013.2493157-CDS-L-elsbetiae_contig1579:2334..24721691683013.2493157-CDS-L-elsbetiae_contig1579:2334..2472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1579 2335..2472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1579.4032.1

>prot_L-elsbetiae_contig1579.4032.1 ID=prot_L-elsbetiae_contig1579.4032.1|Name=mRNA_L-elsbetiae_contig1579.4032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MSARLSGVQREVNQLYRLLLRAAKLKDGGGWTGTTTALVRAEFREQAESV
GRADFRTIEHLLRAGNKKLKLLEMPGVKAAAGVTVERR*
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mRNA from alignment at L-elsbetiae_contig1579:201..2510-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1579.4032.1 ID=mRNA_L-elsbetiae_contig1579.4032.1|Name=mRNA_L-elsbetiae_contig1579.4032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2310bp|location=Sequence derived from alignment at L-elsbetiae_contig1579:201..2510- (Laminarionema elsbetiae ELsaHSoW15)
GGCTGCTGCTGGCTGTTACGGGAAATCCGGCGGTCACCATGTCGGCCAGG
CTCTCTGGGGTTCAGCGAGAGGTTAATCAATTGTATCGTCTTCTTCTGAG
GGCCGCAAAGCTGAAAGACGGTGGAGGGTGGACGGGAACAACTACGGCGC
TTGTCAGGGCAGAGTTCCGTGAGCAGGTATGTTTATGGGTGCTTGTTGTT
GTCAGACTAATGGAAACCGTTCCGATCTCTCTGTCCAGTACCTCCATCTG
TCCAAAATAATCCTAAGCACTGTGACACGGTGAAATCGCATGGTCACAGG
CGCTAACTTACTGGGTACACAGATATATCTATCTGAGTAGACCCGAAACT
CAGACACCCCAATTGATCGCTGTAAGTAGACACAGAGTACATTGCTGTGA
CTTTTGGTTCCACCATTCCTCCAGTTCCTGCCGTGAGTCAACGAGCACAC
CAACGGAAGTACTGAGTGCTGCTGGCAGGGGTTTCGGCCACTGCTCTACA
CTCTACATACACGGCTGGTGTTGGTTCTCTAAGTCCAAAACGCGGTCCAG
ATACGTTGGCCAGCAACCTCCATCGTATCGTCGGCACAGACAACAGCAGC
GGTAGTCAGTAGTGGGATCAGGGACAGAGTTGCTACCCCGCCAGAAAAAC
GCCACATACATGTTGTCAGAGGTGTAGTCTATGTGAGCGTATGTGCAGTC
GAGTTCGACCATAATACATTCAGCCCCCCCCCACCCTCGGCTAAATGGCG
ACGCCGCGGTTAGGATTCCGCACGGCACGCTTTCGAGCGGGCCTCAAAGC
CGGCCCTCCGGGCATGTGTGTTTCTGTTGATTATGTAGCGTCTAGAGCAG
TAGGTTTGCGTCAGTCGTCCCACCCCAAAAGCCAGCAATCCCACGTCAAA
CTGGTCTAGACTATAACGAATCTAGGTACATGTTTAGACTTGCTGAACCG
ACGAATCTACGTAGACGTCGCTGAACTCGCCATGCCGCGTTTTAGATTTG
TAGACTGCACGAGACGACGAGCAAGGCCAAGCTAAGAACCCTGCACCCGG
CACTGCTGTATGCTGGCGAATCCCCACACAAATATCGCCTTGGACGGGAA
GAAAAAGGGGGTTAGTATGTTACATGGTATGCCTACAACAGTCCCTCTGG
AACGACTTTTTCGCAGACTGGACGTAGACTGCTGACATTTGTATACATGC
ATTAATTAAACGTCGTCTCGGGCGCTTCTCTGAACACAGGCTGAATCCGT
CGGGCGCGCTGATTTCCGGACAATCGAGCATCTCTTGCGCGCGGGAAACA
AGAAGCTCAAGCTTCTCGAAATGCCCGGCGTCAAAGCGGCGGCAGGCGTC
ACCGTGGAGCGCCGATGACAGCAGTGGATAGCGCCTTCCTCCTTCGGGTT
GTGCCAGCCAGAGCCAGACATCCAGCCGACGGCGATAGACACCCGACACG
TGTGGGCGTGCGCCTTGGGGGGGCGTGTGGATGGGGAAGCGTGCTGGGGT
GGGGACACAGCGGCGATAGTTTGTGCGTCCTGTTCTGGGAGAACGCGGTC
GTTGTACTGGCTTCCCCAAACGGAGGTGAGATCGATTGCGAAATAGCGCG
TGAGTTAATGTGCTACTGTTGTCGGATTTTCAGCGGGCCACCGTTATGTA
CCGGTAGCTGCGGCAATGTTTCGTTTTGAGCAGAAGGCAACGACAGAGTG
CTCTGCAGCTCACTCGTGGCTGCCGTGGCGACCTGGCTTGGTACACCGAG
GGGATCGGGGGCGGTCGGGATTGTAGGGTGACGACTACTTGACGGGAACC
GGAAAAATCGTAGATTTCATGATGTTTGGCGCTCTTGTGGAGTACTCCGT
AGATTCCATTGGAGCACACACCGAGAGTTGTTCGCGCTTAGCTAGGTAGT
AGTGACTGGGCGCAGGGATGGCGTCGTCGCTCTTCGCAGCCGATGCTCAA
GCTTTGCCCAAAGCGCTCGACTCGGGCTTTGACTGCTACTGTGTCATCTT
CCTCGCCATGTCGGTTACGCTGCCACCTTTGCCGTTCATTTTCCAATCGA
TGAGTATCACGACTCTTCAAAACCCCCCGTGCGCGGCGCAGATTATGGGA
GCGACTTCGGTGCGCGCTAAACAACGAGTCGGCACGAAGAAAGGGACCAA
GAGCCAACTATTCAGGGGGGATGTTCTCTTCGGTCGTGTTTCTGACCGTC
GGGGTCGCCTTCCTGTTGGCCCGATGCGGCGACGTTTGATGCGGAGAGGG
CCACGACCATGGGGTCGAAAGCTATTTAGAGCAAGATCTATCCCGGCACA
TCGATCGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1579:201..2510-

>mRNA_L-elsbetiae_contig1579.4032.1 ID=mRNA_L-elsbetiae_contig1579.4032.1|Name=mRNA_L-elsbetiae_contig1579.4032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig1579:201..2510- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGCCAGGCTCTCTGGGGTTCAGCGAGAGGTTAATCAATTGTATCG
TCTTCTTCTGAGGGCCGCAAAGCTGAAAGACGGTGGAGGGTGGACGGGAA
CAACTACGGCGCTTGTCAGGGCAGAGTTCCGTGAGCAGATGTCGGCCAGG
CTCTCTGGGGTTCAGCGAGAGGTTAATCAATTGTATCGTCTTCTTCTGAG
GGCCGCAAAGCTGAAAGACGGTGGAGGGTGGACGGGAACAACTACGGCGC
TTGTCAGGGCAGAGTTCCGTGAGCAGGCTGAATCCGTCGGGCGCGCTGAT
TTCCGGACAATCGAGCATCTCTTGCGCGCGGGAAACAAGAAGCTCAAGCT
TCTCGAAATGCCCGGCGTCAAAGCGGCGGCAGGCGTCACCGTGGAGCGCC
GATGAGCTGAATCCGTCGGGCGCGCTGATTTCCGGACAATCGAGCATCTC
TTGCGCGCGGGAAACAAGAAGCTCAAGCTTCTCGAAATGCCCGGCGTCAA
AGCGGCGGCAGGCGTCACCGTGGAGCGCCGATGA
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