mRNA_L-elsbetiae_contig1575.4014.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1575.4014.1
Unique NamemRNA_L-elsbetiae_contig1575.4014.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1575.4014.1 vs. uniprot
Match: A0A6H5KJ77_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ77_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 7.310e-22
Identity = 64/102 (62.75%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:    4 PGTLVVGPCDAPRLGSLLVERAATALPRRSLGQVVRRARKLSTKPPPLPPRPGGKGHSRNGS--RGEVRTAAPTPASPKLGSD----ARNKGS----NNPFG 279
            P TLVVGPCDAPRLGSLLVERA+TA+PRRSLGQVVRRARKL++KPPPLPPRP  KG   NG    G     AP  A     SD    A  +G+    NNPFG
Sbjct:  620 PATLVVGPCDAPRLGSLLVERASTAIPRRSLGQVVRRARKLASKPPPLPPRPSAKGLGSNGGGRSGAAVVRAPPKAEGSWQSDPGKLAAKEGTGGSNNNPFG 721
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BLAST of mRNA_L-elsbetiae_contig1575.4014.1 vs. uniprot
Match: D8LJF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF1_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 4.660e-21
Identity = 64/109 (58.72%), Postives = 70/109 (64.22%), Query Frame = 1 
Query:    4 PGTLVVGPCDAPRLGSLLVERAATALPRRSLGQVVRRARKLSTKPPPLPPRPGGKGHSRNGS---------RGEVRTAAPTPASPKLGSD----ARNKGS----NNPFG 279
            P TLVVGPCDAPRLGSLLVERA TA+PRRSLGQVVR ARKL++KPPPLPPRP  +G   NG          RG    AAP  A     SD    A  +G+    NNPFG
Sbjct:  646 PATLVVGPCDAPRLGSLLVERALTAIPRRSLGQVVRSARKLASKPPPLPPRPSARGLGSNGXXXXXXXDVVRGTTAAAAPPKAEGSWQSDPGKLAAKEGTGGSNNNPFG 754
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1575.4014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJ77_9PHAE7.310e-2262.75C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LJF1_ECTSI4.660e-2158.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1575contigL-elsbetiae_contig1575:17397..18312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size623
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.8693566-CDS-L-elsbetiae_contig1575:17398..177961622815646.8693566-CDS-L-elsbetiae_contig1575:17398..17796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1575 17399..17796 -
1691683012.2809474-CDS-L-elsbetiae_contig1575:17398..177961691683012.2809474-CDS-L-elsbetiae_contig1575:17398..17796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1575 17399..17796 -
1622815646.8804889-CDS-L-elsbetiae_contig1575:18089..183121622815646.8804889-CDS-L-elsbetiae_contig1575:18089..18312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1575 18090..18312 -
1691683012.2896695-CDS-L-elsbetiae_contig1575:18089..183121691683012.2896695-CDS-L-elsbetiae_contig1575:18089..18312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1575 18090..18312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1575.4014.1prot_L-elsbetiae_contig1575.4014.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1575 17399..18312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1575.4014.1

>prot_L-elsbetiae_contig1575.4014.1 ID=prot_L-elsbetiae_contig1575.4014.1|Name=mRNA_L-elsbetiae_contig1575.4014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
VPGTLVVGPCDAPRLGSLLVERAATALPRRSLGQVVRRARKLSTKPPPLP
PRPGGKGHSRNGSRGEVRTAAPTPASPKLGSDARNKGSNNPFGSDGGAPA
PPSNPFESGASASSSKSPFGSGGAGGARGGGTPSALPLSPPPLPRRSGSP
FQSVESQHQHQHGALVASPRGRGRSEYSSSCSNTGGSGSAAAAALEGVLG
EAVGLLQ
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mRNA from alignment at L-elsbetiae_contig1575:17397..18312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1575.4014.1 ID=mRNA_L-elsbetiae_contig1575.4014.1|Name=mRNA_L-elsbetiae_contig1575.4014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=916bp|location=Sequence derived from alignment at L-elsbetiae_contig1575:17397..18312- (Laminarionema elsbetiae ELsaHSoW15)
GTGCCGGGCACGCTCGTGGTCGGGCCTTGCGACGCCCCGAGACTCGGGTC
ATTGTTGGTGGAGCGCGCTGCTACGGCTTTGCCCAGGCGGTCGCTGGGCC
AGGTGGTGAGGAGGGCGCGAAAGCTGTCCACCAAGCCGCCGCCTTTGCCG
CCGCGGCCTGGCGGGAAGGGTCACAGCCGCAATGGCAGTCGCGGTGAGGT
TAGGACTGCCGCACCGACACCAGGTAGGAGTAAGATCTGTGTTGCGGCGG
CGTGATCGTGCGTGCGCGAGTTTGTTTCTACGCGTGTGTGTGCGGCGGGG
TGGTTCCTCTTGCGGTTTCTCGAACGGAGAGGTATCTCATTTTCGTGGGC
AGGCCGGCAGCTCGCGGCTCCGCTTTTAGCGGGTGAGAGGAGCATCACAA
ACCTACGCCTTCGACGTGCTGTTCTCCCTTCTGTGCCGAACTACATTCAT
CAACCTCGACCTCTAATCCGTAACACACGGAAACCTCTCCACCGCACTTT
TGACCACTTCACAAAGCGTCGCCGAAATTGGGGAGCGATGCCAGGAACAA
AGGCAGCAACAACCCCTTCGGTTCCGACGGCGGTGCCCCCGCTCCACCAT
CAAACCCCTTTGAAAGCGGCGCGAGCGCTTCGTCGTCAAAGAGCCCCTTC
GGTAGCGGCGGCGCGGGGGGGGCAAGGGGCGGAGGGACGCCGTCGGCGTT
GCCGCTTTCCCCTCCCCCGCTCCCTAGGAGGTCCGGCTCGCCGTTCCAGT
CTGTAGAGTCCCAGCACCAACACCAACACGGAGCGCTTGTCGCTTCCCCT
CGCGGCCGAGGCCGATCGGAGTACTCTTCTTCTTGTTCGAACACCGGCGG
CTCCGGCTCTGCGGCCGCCGCCGCCCTGGAGGGGGTGCTGGGGGAGGCGG
TGGGGTTGCTGCAGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1575:17397..18312-

>mRNA_L-elsbetiae_contig1575.4014.1 ID=mRNA_L-elsbetiae_contig1575.4014.1|Name=mRNA_L-elsbetiae_contig1575.4014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1242bp|location=Sequence derived from alignment at L-elsbetiae_contig1575:17397..18312- (Laminarionema elsbetiae ELsaHSoW15)
GTGCCGGGCACGCTCGTGGTCGGGCCTTGCGACGCCCCGAGACTCGGGTC
ATTGTTGGTGGAGCGCGCTGCTACGGCTTTGCCCAGGCGGTCGCTGGGCC
AGGTGGTGAGGAGGGCGCGAAAGCTGTCCACCAAGCCGCCGCCTTTGCCG
CCGCGGCCTGGCGGGAAGGGTCACAGCCGCAATGGCAGTCGCGGTGAGGT
TAGGACTGCCGCACCGACACCAGGTGCCGGGCACGCTCGTGGTCGGGCCT
TGCGACGCCCCGAGACTCGGGTCATTGTTGGTGGAGCGCGCTGCTACGGC
TTTGCCCAGGCGGTCGCTGGGCCAGGTGGTGAGGAGGGCGCGAAAGCTGT
CCACCAAGCCGCCGCCTTTGCCGCCGCGGCCTGGCGGGAAGGGTCACAGC
CGCAATGGCAGTCGCGGTGAGGTTAGGACTGCCGCACCGACACCAGCGTC
GCCGAAATTGGGGAGCGATGCCAGGAACAAAGGCAGCAACAACCCCTTCG
GTTCCGACGGCGGTGCCCCCGCTCCACCATCAAACCCCTTTGAAAGCGGC
GCGAGCGCTTCGTCGTCAAAGAGCCCCTTCGGTAGCGGCGGCGCGGGGGG
GGCAAGGGGCGGAGGGACGCCGTCGGCGTTGCCGCTTTCCCCTCCCCCGC
TCCCTAGGAGGTCCGGCTCGCCGTTCCAGTCTGTAGAGTCCCAGCACCAA
CACCAACACGGAGCGCTTGTCGCTTCCCCTCGCGGCCGAGGCCGATCGGA
GTACTCTTCTTCTTGTTCGAACACCGGCGGCTCCGGCTCTGCGGCCGCCG
CCGCCCTGGAGGGGGTGCTGGGGGAGGCGGTGGGGTTGCTGCAGCGTCGC
CGAAATTGGGGAGCGATGCCAGGAACAAAGGCAGCAACAACCCCTTCGGT
TCCGACGGCGGTGCCCCCGCTCCACCATCAAACCCCTTTGAAAGCGGCGC
GAGCGCTTCGTCGTCAAAGAGCCCCTTCGGTAGCGGCGGCGCGGGGGGGG
CAAGGGGCGGAGGGACGCCGTCGGCGTTGCCGCTTTCCCCTCCCCCGCTC
CCTAGGAGGTCCGGCTCGCCGTTCCAGTCTGTAGAGTCCCAGCACCAACA
CCAACACGGAGCGCTTGTCGCTTCCCCTCGCGGCCGAGGCCGATCGGAGT
ACTCTTCTTCTTGTTCGAACACCGGCGGCTCCGGCTCTGCGGCCGCCGCC
GCCCTGGAGGGGGTGCTGGGGGAGGCGGTGGGGTTGCTGCAG
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