mRNA_L-elsbetiae_contig1529.3752.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1529.3752.1
Unique NamemRNA_L-elsbetiae_contig1529.3752.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1529.3752.1 vs. uniprot
Match: D7G879_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G879_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.460e-40
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 1
Query:    1 VWQKTTKSAVSGRSAKIGDLLKNTGATIVSGEGNTPGKRALANAEMMHQAAAMITNDRQQEKESMAEFIAKKREMFLVQMSLDTKR 258
            VWQKTTKSAVSGRSAKIGDLLKNTGA IV GE +TPGKRALANAEMMHQAA MITNDRQQEKESMAEFI+KKREMFLVQMSLDTKR
Sbjct:   51 VWQKTTKSAVSGRSAKIGDLLKNTGAAIVGGEDSTPGKRALANAEMMHQAATMITNDRQQEKESMAEFISKKREMFLVQMSLDTKR 136          
BLAST of mRNA_L-elsbetiae_contig1529.3752.1 vs. uniprot
Match: A0A7S1CA91_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA91_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.350e-13
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 VWQKTTKSAVSGRSAKIGDLLKNTGATIVSGEGNTPGKRALANAEMMHQAAAMITNDRQQEKESMAEFIAKKREMFLVQMSLDTKR 258
            VW+KTT+S+  G++ +I DLL    A   +G  +T G  A A         A I+NDR++EKE+MA+FIAKKREMFLVQMSLDTKR
Sbjct:   46 VWEKTTQSSRMGKTRQISDLLPPADAGASAGARHTRGLVAAA--------TAAISNDRRREKENMADFIAKKREMFLVQMSLDTKR 123          
BLAST of mRNA_L-elsbetiae_contig1529.3752.1 vs. uniprot
Match: F0Y2D2_AURAN (DUF4200 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2D2_AURAN)

HSP 1 Score: 70.1 bits (170), Expect = 3.890e-12
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    1 VWQKTTKSAVSGRSAKIGDLLKNTGATIVSGEGNTPGKRALANAEMMHQAAAMITNDRQQEKESMAEFIAKKREMFLVQMSLDTKR 258
            VWQKTT  +    S ++ +L+   G      EG    K A    + +++A +++ N+R+QEKE+MAEFIAKKREMFLVQMSLDTKR
Sbjct:   42 VWQKTTGGSRVAGSVRLKELIGGDGR-----EGAAASKSARQTKDAVNEARSIVVNERRQEKENMAEFIAKKREMFLVQMSLDTKR 122          
BLAST of mRNA_L-elsbetiae_contig1529.3752.1 vs. uniprot
Match: A0A7S2W9L4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9L4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.700e-11
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 VWQKTTKSAVSGRSAKIGDLLKNTGATIVSGEGNTPGKRALANAEMMHQAAAMITNDRQQEKESMAEFIAKKREMFLVQMSLDTKR 258
            VW+K T SAV+GR+++I DL+    A        +   +AL  A       +++  +R+ EKE+MAEFIAKKREMFLVQMSLDTKR
Sbjct:   54 VWEKMTGSAVTGRASRIADLIDEGAAGRSHDSRRSHKTKALVTA-----GKSVVGTERRPEKENMAEFIAKKREMFLVQMSLDTKR 134          
BLAST of mRNA_L-elsbetiae_contig1529.3752.1 vs. uniprot
Match: H3GEG8_PHYRM (DUF4200 domain-containing protein n=18 Tax=Phytophthora TaxID=4783 RepID=H3GEG8_PHYRM)

HSP 1 Score: 60.1 bits (144), Expect = 1.300e-8
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 VWQKTTKSAVSGRSAKIGDLLKNTGATIVSGEGNTPGKRALANAEMMHQAAAMITNDRQQEKESMAEFIAKKREMFLVQMSLDTKR 258
            ++ KTT S+      KIG++ +       +G  N    ++     ++  A A I+NDR +EKE+MA+FIAKKREMFLVQMSLDTKR
Sbjct:   49 IYDKTTASS------KIGNIRRFRSDDAPTGLDNYSASQSRQTRGLVAAATATISNDRLREKENMADFIAKKREMFLVQMSLDTKR 128          
BLAST of mRNA_L-elsbetiae_contig1529.3752.1 vs. uniprot
Match: A0A836CAG4_9STRA (Flagellar associated protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAG4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.520e-8
Identity = 41/87 (47.13%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    1 VWQKTTKSAVSGRSAKIGDLLKNTGATIVSGEGNTPGKRALANAEMMHQAAAMITNDRQ-QEKESMAEFIAKKREMFLVQMSLDTKR 258
            +W+K   + V+  S K+G +L+  G  IV       GK A       H A+ +    RQ Q+KESMA+ IAKKREMFLVQMSLDTKR
Sbjct:   39 IWEKGLTTNVT-TSRKLGAMLREAGTGIVGANSAASGKAAPP-----HAASGLFKQRRQVQDKESMADLIAKKREMFLVQMSLDTKR 119          
BLAST of mRNA_L-elsbetiae_contig1529.3752.1 vs. uniprot
Match: A0A0P1ACS3_PLAHL (DUF4200 domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACS3_PLAHL)

HSP 1 Score: 57.4 bits (137), Expect = 1.150e-7
Identity = 43/86 (50.00%), Postives = 49/86 (56.98%), Query Frame = 1
Query:    1 VWQKTTKSAVSGRSAKIGDLLKNTGATIVSGEGNTPGKRALANAEMMHQAAAMITNDRQQEKESMAEFIAKKREMFLVQMSLDTKR 258
            V+ KTT S+  G   +       TG    S    T G  A A         A I+NDR +E+ESMAEFIAKKREMFLVQMSLDTKR
Sbjct:   43 VYDKTTASSKIGNFRRFRSNDTPTGLDDYSSVHQTRGLVAAA--------TATISNDRLRERESMAEFIAKKREMFLVQMSLDTKR 120          
BLAST of mRNA_L-elsbetiae_contig1529.3752.1 vs. uniprot
Match: A0A2D4C7Z8_PYTIN (DUF4200 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C7Z8_PYTIN)

HSP 1 Score: 56.2 bits (134), Expect = 2.940e-7
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1
Query:  148 AAAMITNDRQQEKESMAEFIAKKREMFLVQMSLDTKR 258
            A A I+NDR +EKE+MA+FIAKKREMFLVQMSLDTKR
Sbjct:   81 ATAAISNDRLREKENMADFIAKKREMFLVQMSLDTKR 117          
BLAST of mRNA_L-elsbetiae_contig1529.3752.1 vs. uniprot
Match: A0A5D6XL57_9STRA (DUF4200 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL57_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.960e-7
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1
Query:  148 AAAMITNDRQQEKESMAEFIAKKREMFLVQMSLDTKR 258
            A A I+NDR +EKE+MA+FIAKKREMFLVQMSLDTKR
Sbjct:  120 ATAAISNDRLREKENMADFIAKKREMFLVQMSLDTKR 156          
BLAST of mRNA_L-elsbetiae_contig1529.3752.1 vs. uniprot
Match: A0A2R5FZR6_9STRA (Cilia-and flagella-associated protein 100 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FZR6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.970e-7
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    1 VWQKTTKSA--VSGRSAKIG------DLLKNTGATIVSGEGNTPGKRALANAEMMHQAAAMITNDRQQEKESMAEFIAKKREMFLVQMSLDTKR 258
            VW+KT +S    +G ++++       +L    G+ +    G   G R +A  +++    A I  +R+ EK++MA+FIAKKREMFLVQMSLDTKR
Sbjct:   43 VWEKTLESTKRATGGTSRVSRRELDRELSPRGGSELARSNGG--GNRLVATGKLVSNQGAGIALERRHEKDNMADFIAKKREMFLVQMSLDTKR 134          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1529.3752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G879_ECTSI1.460e-4093.02Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A7S1CA91_9STRA2.350e-1353.49Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
F0Y2D2_AURAN3.890e-1248.84DUF4200 domain-containing protein n=1 Tax=Aureococ... [more]
A0A7S2W9L4_9STRA4.700e-1148.84Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
H3GEG8_PHYRM1.300e-845.35DUF4200 domain-containing protein n=18 Tax=Phytoph... [more]
A0A836CAG4_9STRA4.520e-847.13Flagellar associated protein (Fragment) n=1 Tax=Tr... [more]
A0A0P1ACS3_PLAHL1.150e-750.00DUF4200 domain-containing protein n=1 Tax=Plasmopa... [more]
A0A2D4C7Z8_PYTIN2.940e-781.08DUF4200 domain-containing protein n=1 Tax=Pythium ... [more]
A0A5D6XL57_9STRA2.960e-781.08DUF4200 domain-containing protein n=1 Tax=Pythium ... [more]
A0A2R5FZR6_9STRA2.970e-740.43Cilia-and flagella-associated protein 100 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1529contigL-elsbetiae_contig1529:386..1012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue8.8e-35
Seed eggNOG ortholog2880.D7G879
Preferred nameCCDC37
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003341,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0032838,GO:0034622,GO:0035082,GO:0036159,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0044877,GO:0048870,GO:0050790,GO:0051179,GO:0051336,GO:0051674,GO:0060271,GO:0065003,GO:0065007,GO:0065009,GO:0070286,GO:0070840,GO:0070925,GO:0071840,GO:0097014,GO:0097545,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:2000574
EggNOG free text desc.inner dynein arm assembly
EggNOG OGs28JZ3@1,2QSDI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-12_001140.1
Exons2
Model size261
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.712159-CDS-L-elsbetiae_contig1529:386..4971622815622.712159-CDS-L-elsbetiae_contig1529:386..497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1529 387..497 -
1691682997.266308-CDS-L-elsbetiae_contig1529:386..4971691682997.266308-CDS-L-elsbetiae_contig1529:386..497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1529 387..497 -
1622815622.7260585-CDS-L-elsbetiae_contig1529:865..10121622815622.7260585-CDS-L-elsbetiae_contig1529:865..1012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1529 866..1012 -
1691682997.2759333-CDS-L-elsbetiae_contig1529:865..10121691682997.2759333-CDS-L-elsbetiae_contig1529:865..1012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1529 866..1012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1529.3752.1prot_L-elsbetiae_contig1529.3752.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1529 387..1012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1529.3752.1

>prot_L-elsbetiae_contig1529.3752.1 ID=prot_L-elsbetiae_contig1529.3752.1|Name=mRNA_L-elsbetiae_contig1529.3752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
VWQKTTKSAVSGRSAKIGDLLKNTGATIVSGEGNTPGKRALANAEMMHQA
AAMITNDRQQEKESMAEFIAKKREMFLVQMSLDTKR
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mRNA from alignment at L-elsbetiae_contig1529:386..1012-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1529.3752.1 ID=mRNA_L-elsbetiae_contig1529.3752.1|Name=mRNA_L-elsbetiae_contig1529.3752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=627bp|location=Sequence derived from alignment at L-elsbetiae_contig1529:386..1012- (Laminarionema elsbetiae ELsaHSoW15)
GTTTGGCAGAAAACGACCAAGAGCGCCGTATCTGGACGCTCGGCGAAGAT CGGGGACCTTTTGAAAAACACCGGGGCGACCATCGTATCCGGGGAGGGAA ACACCCCCGGGAAAAGAGCTCTAGCAAACGCCGAGATGATGCACCAGGTG GGTACAGCAGTGCAGGATAGCTTTATGTGTTCTGATTGTCCATCTCCTGA CAATCCTGCGACAGAAGCGTCCCGACGCTGGAGTACCACCTTTGCGGGGA AGTTTGCTTCTCTGCAGTATTTTTGAGCTGAAGGCTATCTCGTGCGGGTG AGGTGAGACACCCCTAATATTTTTTAGTCTGATCGACGGCGTACTGCTGT GGGTTGTGCGCACGGAATAGCGCTGGAGACAGTATGCTGTGGTGTCGAGG AGACGTTAGAAGCTTGCCGTGTTCGGACCATCCAAATTCTACACATCACA TACCCCTTTCTTCTTCGCATCGTTGGTGCGGTGCGGTGTGGTGTGGGTAC ATATCACACGAGCAGGCGGCCGCAATGATCACGAATGACCGGCAGCAGGA GAAAGAGAGCATGGCGGAGTTTATTGCCAAGAAGCGTGAGATGTTCCTCG TGCAGATGAGCCTGGACACCAAGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1529:386..1012-

>mRNA_L-elsbetiae_contig1529.3752.1 ID=mRNA_L-elsbetiae_contig1529.3752.1|Name=mRNA_L-elsbetiae_contig1529.3752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig1529:386..1012- (Laminarionema elsbetiae ELsaHSoW15)
GTTTGGCAGAAAACGACCAAGAGCGCCGTATCTGGACGCTCGGCGAAGAT
CGGGGACCTTTTGAAAAACACCGGGGCGACCATCGTATCCGGGGAGGGAA
ACACCCCCGGGAAAAGAGCTCTAGCAAACGCCGAGATGATGCACCAGGTT
TGGCAGAAAACGACCAAGAGCGCCGTATCTGGACGCTCGGCGAAGATCGG
GGACCTTTTGAAAAACACCGGGGCGACCATCGTATCCGGGGAGGGAAACA
CCCCCGGGAAAAGAGCTCTAGCAAACGCCGAGATGATGCACCAGGCGGCC
GCAATGATCACGAATGACCGGCAGCAGGAGAAAGAGAGCATGGCGGAGTT
TATTGCCAAGAAGCGTGAGATGTTCCTCGTGCAGATGAGCCTGGACACCA
AGCGAGCGGCCGCAATGATCACGAATGACCGGCAGCAGGAGAAAGAGAGC
ATGGCGGAGTTTATTGCCAAGAAGCGTGAGATGTTCCTCGTGCAGATGAG
CCTGGACACCAAGCGA
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