mRNA_L-elsbetiae_contig1526.3737.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1526.3737.1
Unique NamemRNA_L-elsbetiae_contig1526.3737.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1526.3737.1 vs. uniprot
Match: A0A2J8A4F0_9CHLO (Transmembrane protein 218 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A4F0_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 1.090e-14
Identity = 42/126 (33.33%), Postives = 70/126 (55.56%), Query Frame = 1 
Query:   10 AANIDGLTEKGE----TRVMGLGVGVFLIFFFSMVATVICLVGATTPRPGTFACGGAGLLGFVVLLLLVAEQDSRYVEDKSDQIQEYDQTFYPRLVAVAILTLGLLLGFVGLCVMHIGKPLHATPM 375
            AA    LT  G     TRV+G+G+GVFL+FFF  ++ V+CLVG+ T            + G + L+L+ + +  + V+      + YD T  P ++  A++ +G+LLG VG+ V H+   ++A P+
Sbjct:   26 AAGGTELTHHGRALLATRVVGVGLGVFLVFFFLALSLVVCLVGSRTKYRWAIYMASTAMFGIIALVLIASPKGEKPVKPP----EGYDLTIIPVVIITAVVCIGVLLGAVGMLVFHVLPTVYARPL 147
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BLAST of mRNA_L-elsbetiae_contig1526.3737.1 vs. uniprot
Match: A0A6T5NUG8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NUG8_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 7.860e-13
Identity = 44/125 (35.20%), Postives = 69/125 (55.20%), Query Frame = 1 
Query:   28 LTEKGETRVMGLGVGVFLIFFFSMVATVICLVGATTPRPGTFACGGAGLLGFVVLLLLVAEQDSRYVEDKSDQIQEYDQTFYPRLVAVAILTLGLLLGFVGLCVMHIGKPLHATPMYDQRSDPRR 402
            + E   TRV+G+G+GVFLI FF  +A ++ +VGA   + G F   G G+   V  +L  A++ S+YV  + + +Q+Y   FYPR+V  AIL  G L+      V  + + +H   M D  +  +R
Sbjct:   10 VVEAEPTRVLGVGIGVFLIAFFFALALLLSVVGAALGKKGIFFGIGTGIFLLVCAILFGADRGSQYVIVE-ETVQDYSALFYPRVVFAAILGAGALMAAAP-AVQMLTEQVHTEVMDDLETRRKR 132
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BLAST of mRNA_L-elsbetiae_contig1526.3737.1 vs. uniprot
Match: D8TRS0_VOLCA (Transmembrane protein 218 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TRS0_VOLCA)

HSP 1 Score: 67.4 bits (163), Expect = 8.400e-12
Identity = 36/109 (33.03%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:   49 RVMGLGVGVFLIFFFSMVATVICLVGATTPRPGTFACGGAGLLGFVVLLLLVAEQDSRYVEDKSDQIQEYDQTFYPRLVAVAILTLGLLLGFVGLCVMHIGKPLHATPM 375
            RV G+GVGVFL+FFF  ++ +ICL+G+ +          A + G V L+LL + +  +    ++   + YDQT  P +V + IL +G+L+  VG+ +  +   ++A P+
Sbjct:    4 RVAGVGVGVFLLFFFLALSVLICLLGSRSKLRWIVFTASAAMFGIVALVLLASPKGPK----RTKPPEGYDQTIVPLVVVMVILAIGVLMSAVGMLIFALLPTVYARPL 108
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BLAST of mRNA_L-elsbetiae_contig1526.3737.1 vs. uniprot
Match: A0A8J2SSJ6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSJ6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.590e-8
Identity = 38/138 (27.54%), Postives = 65/138 (47.10%), Query Frame = 1 
Query:   10 AANIDGLTEKGETRVMGLGVGVFLIFFFSMVATVICLVGATTP--RPGTFACGGAGLLGF--VVLLLLVAEQDSRYVEDKSDQIQEYDQTFYPRLVAVAILTLGLLLGFVGLCVMHIGKPLHATPMYDQRSDPRRPIF 411
            AA   GL   G+ RV+G+G+GVFL+ FF +    +C  GA  P  R   +     G LGF  V  +L +A++   Y  ++  + +E+D      +V   +L      G   +   H+  P+ A  +  + +  R+ +F
Sbjct:   36 AAEEQGLRRAGKERVLGVGLGVFLLSFFFIAMCALCWAGALLPQERGEQWIFNVVGTLGFGVVACVLFLADERPEYASEERAE-REHDDNLIGLIVVAGLLACAAAFGLGAVLCYHVCAPVEAPLVQKRPAGDRQGLF 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1526.3737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2J8A4F0_9CHLO1.090e-1433.33Transmembrane protein 218 n=1 Tax=Tetrabaena socia... [more]
A0A6T5NUG8_HETAK7.860e-1335.20Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8TRS0_VOLCA8.400e-1233.03Transmembrane protein 218 n=1 Tax=Volvox carteri f... [more]
A0A8J2SSJ6_9STRA7.590e-827.54Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1526contigL-elsbetiae_contig1526:12190..14297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_008840.1
Exons4
Model size414
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1526.3737.1prot_L-elsbetiae_contig1526.3737.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1526 12190..14297 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.2913108-CDS-L-elsbetiae_contig1526:12189..122401622815621.2913108-CDS-L-elsbetiae_contig1526:12189..12240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1526 12190..12240 -
1691682996.4344125-CDS-L-elsbetiae_contig1526:12189..122401691682996.4344125-CDS-L-elsbetiae_contig1526:12189..12240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1526 12190..12240 -
1622815621.306647-CDS-L-elsbetiae_contig1526:12853..129641622815621.306647-CDS-L-elsbetiae_contig1526:12853..12964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1526 12854..12964 -
1691682996.4449408-CDS-L-elsbetiae_contig1526:12853..129641691682996.4449408-CDS-L-elsbetiae_contig1526:12853..12964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1526 12854..12964 -
1622815621.3181622-CDS-L-elsbetiae_contig1526:13392..134981622815621.3181622-CDS-L-elsbetiae_contig1526:13392..13498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1526 13393..13498 -
1691682996.4547472-CDS-L-elsbetiae_contig1526:13392..134981691682996.4547472-CDS-L-elsbetiae_contig1526:13392..13498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1526 13393..13498 -
1622815621.3288527-CDS-L-elsbetiae_contig1526:14151..142971622815621.3288527-CDS-L-elsbetiae_contig1526:14151..14297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1526 14152..14297 -
1691682996.471727-CDS-L-elsbetiae_contig1526:14151..142971691682996.471727-CDS-L-elsbetiae_contig1526:14151..14297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1526 14152..14297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1526.3737.1

>prot_L-elsbetiae_contig1526.3737.1 ID=prot_L-elsbetiae_contig1526.3737.1|Name=mRNA_L-elsbetiae_contig1526.3737.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
MSTAANIDGLTEKGETRVMGLGVGVFLIFFFSMVATVICLVGATTPRPGT
FACGGAGLLGFVVLLLLVAEQDSRYVEDKSDQIQEYDQTFYPRLVAVAIL
TLGLLLGFVGLCVMHIGKPLHATPMYDQRSDPRRPIF*
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mRNA from alignment at L-elsbetiae_contig1526:12190..14297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1526.3737.1 ID=mRNA_L-elsbetiae_contig1526.3737.1|Name=mRNA_L-elsbetiae_contig1526.3737.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2108bp|location=Sequence derived from alignment at L-elsbetiae_contig1526:12190..14297- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTACCGCAGCGAATATCGATGGTTTGACGGAGAAAGGGGAGACACG
AGTCATGGGACTTGGAGTAGGGGTGTTTCTCATCTTCTTTTTCTCGATGG
TGGCGACCGTTATTTGCCTGGTCGGCGCAACGACTCCAAGACCTGGGTAA
GAGGGAGGCAGAGGATCAATCCAAGTGTTCGTCGGTTGTAGTGCTACAAC
TTACCGTCGGAAAATTGGAACGGCGTTTTGCACAATGCCGTCCCACCTAC
AGCCCAAACCACGGGGCTGCTGTCCTGAAATCTATCTCCATCAACTCTAA
GTGCAAATCAAACAAACAAACCGGCTGTGGATTACGAGTGTTCCACAGGA
ACATTTCGCTTCTTACGTACTACTGTAGATACAAAGATAATAGTCTGGTG
TGTACTTAAAGGTACATGCAGCCGCCGCAACAGCAGCTGCAGTGGTCGGT
CGGACGGTACTCTGTACATAAAAATATCATGCGATGATGTTGTCGTACAT
AGAAGCAATCTCGTGAGTGAGAAACACCGCCACGGGGGAGCTATATATAC
CACCGTAACATGCAGGTAGGAGCCATTTCTCGCTGCGAGCCAACCACTGA
CATCAAATAGACTAGCCTGATGGTACAACTTGACCGGCAACCCCTTACTG
TAGGAGTTTTTTTTCTCACTTTGAGCACCCTTCATCGCTGTTGCATTAAA
AAAACTGCCAATTCAATCGCGGCGGCATTCTAACTAATGCTGCTATGTCC
CCGCACTCTCTCACACAATGGTAACGTGGGTATCGAACATGGGTTTAAGG
ACATTCGCATGCGGAGGAGCGGGGCTTCTGGGGTTCGTGGTATTACTTCT
TCTCGTCGCTGAGCAAGATTCTAGATACGTCGAAGACAAAAGCGACCAAA
TACAGGTCCGTATCCAGATAGTCTACGTATGTATCGGCGTAAGAGGAACA
ATCGCAGGGTTGTTCGGTGAATCGAACAGAATTGTAGTTCGGAAGCTTTC
AAGTTATCATGCTATCTTTCAACGTAAAACAAGCCCAGTGGTCGTACAGC
AACGGCGTTGTGCGCGTTTTTCTTTGTCAGTGGAGCACTGTGCAGTTGTA
TTGTATCAGGCAAGTTGAGGAGCATCTACAGCGTTCACTTGGTCGCCAAG
GTTTGTCAGCGCGTCATTCTTAGTAACGTTATTAGGTAGAGCAGGATTCG
ATCATGACGAGGGTTTCTTCTGCCAGGCACAGAGTGCTTGCATTGTTAGC
GTGTCGCACCCCTTTTCGATTTGCAACCCCCCGGCCTGTACTAACCAGGA
AGGCTATCCCTCGTTCTCTCGTGTGTACTACAGGAGTACGACCAAACGTT
CTATCCGAGATTGGTGGCTGTCGCCATCTTAACGCTGGGGTTATTACTAG
GCTTTGTAGGTCTGTGCGTTATGCATATTGGGAAGCCATTACATGTGAGT
GCAACCTGGCCGACCTGGGCGGGGACCTACCTGGTTCAAAATGCCCATGG
CATATATATAACGGATAAGGGCAAATAGCTTTAGAATCGGTCGATGCTTT
CTTTCAGAAAATTCTTCCCTCGTTGGCGATCGTTGACTTGGCGTTCGAAA
ATGTACTGCTCTAAGCCTGTGCCTCGCACCCGCACGTGCTGTAGGAGGAA
ACGCACAGAAGCGTGATTTTCAACATGATTTCTGGCTTGACTGACTGTGT
GACCAAACTTTGTAAACCTTTCAAACAGCATCCTTCCTTGACCTTTACCT
GTCGCATATAACGCAATGTTTTGATACAAATTCCGACCTTAAAATCGGCG
AGTTACGTTGATCAAATCCAAGGCAGTATGTAACTCCCAAATATGTTCAC
GTCCAGCATATCGCCGTTGCCCTCCGAGCTCATGGCATAGACTATTGAGC
CTTTTAGGTTGCGTTATAGTGTTGCGCCGCGTAAGTTCCCTCTCTGAACG
CGTTGGTGCTTCAAGACATGGCCCTCTCTTTCCCACAACATAACCCCGTC
GCGCTGTATCTACCCGTTGTCATCGTTCTGCTGAATAACATTGATTATGC
TTCACAGGCCACGCCAATGTACGACCAACGAAGTGATCCACGAAGACCCA
TTTTTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1526:12190..14297-

>mRNA_L-elsbetiae_contig1526.3737.1 ID=mRNA_L-elsbetiae_contig1526.3737.1|Name=mRNA_L-elsbetiae_contig1526.3737.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig1526:12190..14297- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTACCGCAGCGAATATCGATGGTTTGACGGAGAAAGGGGAGACACG
AGTCATGGGACTTGGAGTAGGGGTGTTTCTCATCTTCTTTTTCTCGATGG
TGGCGACCGTTATTTGCCTGGTCGGCGCAACGACTCCAAGACCTGGATGT
CTACCGCAGCGAATATCGATGGTTTGACGGAGAAAGGGGAGACACGAGTC
ATGGGACTTGGAGTAGGGGTGTTTCTCATCTTCTTTTTCTCGATGGTGGC
GACCGTTATTTGCCTGGTCGGCGCAACGACTCCAAGACCTGGGACATTCG
CATGCGGAGGAGCGGGGCTTCTGGGGTTCGTGGTATTACTTCTTCTCGTC
GCTGAGCAAGATTCTAGATACGTCGAAGACAAAAGCGACCAAATACAGGA
CATTCGCATGCGGAGGAGCGGGGCTTCTGGGGTTCGTGGTATTACTTCTT
CTCGTCGCTGAGCAAGATTCTAGATACGTCGAAGACAAAAGCGACCAAAT
ACAGGAGTACGACCAAACGTTCTATCCGAGATTGGTGGCTGTCGCCATCT
TAACGCTGGGGTTATTACTAGGCTTTGTAGGTCTGTGCGTTATGCATATT
GGGAAGCCATTACATGAGTACGACCAAACGTTCTATCCGAGATTGGTGGC
TGTCGCCATCTTAACGCTGGGGTTATTACTAGGCTTTGTAGGTCTGTGCG
TTATGCATATTGGGAAGCCATTACATGCCACGCCAATGTACGACCAACGA
AGTGATCCACGAAGACCCATTTTTTGAGCCACGCCAATGTACGACCAACG
AAGTGATCCACGAAGACCCATTTTTTGA
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